RLG00000012436

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014610
Physical Location & Seq
Reverse (-)
18798530 .. 18799898
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012436

Sequence Viewer

Length: 738 bp
ATGTCTTGCTTGAGGCTGAGGCTTCCACCAGCCAGAAAGGCTTGGAAGAGCTTCACTTCCAAACTACACAGCAAGCTCCATAAACGCAAAGCCATCAACAAATCCAGAAATCGAGTCAAGCCCTCCACTACAATCTCTATTCGAGTTCGACCCTACAAGTTTCTTCAGCTACGCTTGCAGTGCAAACCATGCTTTTCGCTGCGCTTTCGCCAGAATTGTCGTAGCCTGCTTCAAAACAGGCATGCACATGTTTATGTGGACAGGCTCTTTAAAGAGCCTGCCGTCTCCGAGCTAGTTGCTGAGCGTTGTCAACAGCAGAAAACTCCACTAGCAAAGTGTGTGATCAAGACTATTGAGGATCGCTCTGTACCAGAAGCAGGCAAGCAATCTCATTCTGCAGTTGGTGAGAATAGCGAGTCTGAAGGACTAGCCAGTGCTGCAGATGATATGTGGGAATCACTGGGATTTGCCTCCCCCCAGATGGATGGAATTGATGAAAGAGCCGAGGAGTTTATAGCTCGGTTCAGGGCAGAAATGAAGGATCAGGAGACTATGATGGGTCTCGTTTTGCAGATTGACGGCGTTGCAGATTGGGGGTGCTGGGTAGGGGCAGTTTTCGGCTTTAGGCGGCGTTGGATCGTGGAGCGTTGGGTCGTGGTGTCGTGGCGGTTTAGACTACGGCGGCGGAATCGTGGAGCGCTGGGTTGTGGCAGGTCCGTGGCTGTGTTCGCGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

246

Amino Acids

28.22

Weight (kDa)

10.37

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 162 - 180 8e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20500
fragaria_vesca FvH4_2g21490
malus_domestica MD05G1197200.v1.1
prunus_persica Prupe.8G223700_v2.0.a1
pyrus_communis pycom05g18430 pycom10g15920
rosa_chinensis RchiOBHm_Chr6g0288121
rosa_laevigata RLG00000012436
rosa_multiflora Rmu_sc0001851.1_g000029 Rmu_sc0010766.1_g000005
rosa_roxburghii Rroxscaffold_7G00180480
rosa_rugosa Rorug06G0194400.1
rosa_samantha Rh6AG304600 Rh6BG310600 Rh6CG318700 Rh6DG303600
rosa_wichuraiana Rw6G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 702
AccII CGCG 1 cut(s) 731
AciI CCGC 4 cut(s) 628, 667, 682, 685
AclWI GGATC 3 cut(s) 366, 549, 644
AcuI CTGAAG 2 cut(s) 149, 441
AfaI GTAC 1 cut(s) 369
AfeI AGCGCT 1 cut(s) 699
AfiI CCNNNNNNNGG 2 cut(s) 377, 481
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 5 cut(s) 51, 76, 169, 292, 518
AluI AGCT 5 cut(s) 51, 76, 169, 292, 518
Alw26I GTCTC 3 cut(s) 289, 542, 566
AlwI GGATC 3 cut(s) 366, 549, 644
Aor51HI AGCGCT 1 cut(s) 699
ApeKI GCWGC 2 cut(s) 199, 437
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 204, 700
AspS9I GGNCC 1 cut(s) 714
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 714
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 186, 424
BccI CCATC 4 cut(s) 101, 475, 479, 550
BceAI ACGGC 3 cut(s) 266, 595, 695
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 3 cut(s) 289, 542, 566
BfaI CTAG 3 cut(s) 293, 329, 428
BfmI CTRYAG 2 cut(s) 396, 438
BfoI RGCGCY 1 cut(s) 701
BfuAI ACCTGC 1 cut(s) 702
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 200, 438, 629, 683
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 4 cut(s) 201, 439, 630, 684
Bme18I GGWCC 1 cut(s) 714
BmgT120I GGNCC 1 cut(s) 714
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 504, 717
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 481
Bse1I ACTGG 2 cut(s) 432, 465
BseDI CCNNGG 2 cut(s) 504, 717
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 377, 481
BseMII CTCAG 2 cut(s) 8, 291
BseNI ACTGG 2 cut(s) 432, 465
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 2 cut(s) 186, 424
BseYI CCCAGC 2 cut(s) 600, 700
Bsh1236I CGCG 1 cut(s) 731
BslI CCNNNNNNNGG 2 cut(s) 377, 481
BsmAI GTCTC 3 cut(s) 289, 542, 566
BsmBI CGTCTC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 566
Bsp143I GATC 4 cut(s) 342, 358, 541, 636
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 4 cut(s) 628, 667, 682, 685
BspCNI CTCAG 2 cut(s) 9, 292
BspFNI CGCG 1 cut(s) 731
BspMAI CTGCAG 2 cut(s) 400, 442
BspMI ACCTGC 1 cut(s) 702
BspPI GGATC 3 cut(s) 366, 549, 644
BspQI GCTCTTC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 566
BsrI ACTGG 2 cut(s) 432, 465
BssECI CCNNGG 2 cut(s) 504, 717
BssMI GATC 4 cut(s) 342, 358, 541, 636
Bst6I CTCTTC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 189
BstC8I GCNNGC 7 cut(s) 74, 176, 227, 243, 279, 379, 383
BstDEI CTNAG 2 cut(s) 17, 300
BstDSI CCRYGG 1 cut(s) 717
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 731
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 2 cut(s) 204, 700
BstKTI GATC 4 cut(s) 345, 361, 544, 639
BstMAI GTCTC 3 cut(s) 289, 542, 566
BstMBI GATC 4 cut(s) 342, 358, 541, 636
BstMWI GCNNNNNNNGC 6 cut(s) 38, 175, 180, 189, 437, 728
BstNSI RCATGY 2 cut(s) 245, 251
BstSFI CTRYAG 2 cut(s) 396, 438
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 2 cut(s) 186, 424
BstXI CCANNNNNNTGG 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 717
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 3 cut(s) 185, 439, 458
BveI ACCTGC 1 cut(s) 702
Cac8I GCNNGC 7 cut(s) 74, 176, 227, 243, 279, 379, 383
CfoI GCGC 2 cut(s) 204, 700
Cfr13I GGNCC 1 cut(s) 714
CseI GACGC 1 cut(s) 720
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 189, 242, 248
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 2 cut(s) 17, 300
DpnI GATC 4 cut(s) 344, 360, 543, 638
DpnII GATC 4 cut(s) 342, 358, 541, 636
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 700
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 714
Eco47III AGCGCT 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 149, 441
Esp3I CGTCTC 1 cut(s) 289
FaeI CATG 3 cut(s) 192, 245, 251
FaiI YATR 8 cut(s) 81, 190, 243, 249, 255, 449, 515, 554
FatI CATG 3 cut(s) 188, 241, 247
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 200, 438, 629, 683
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 4 cut(s) 200, 438, 629, 683
FspBI CTAG 3 cut(s) 293, 329, 428
GlaI GCGC 2 cut(s) 203, 699
GluI GCNGC 4 cut(s) 200, 438, 629, 683
GsaI CCCAGC 2 cut(s) 604, 704
HaeII RGCGCY 1 cut(s) 701
HgaI GACGC 1 cut(s) 720
HhaI GCGC 2 cut(s) 204, 700
Hin1II CATG 3 cut(s) 192, 245, 251
Hin6I GCGC 2 cut(s) 202, 698
HinP1I GCGC 2 cut(s) 202, 698
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HinfI GANTC 4 cut(s) 114, 416, 455, 688
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 259, 311
Hpy188I TCNGA 2 cut(s) 289, 421
Hpy188III TCNNGA 4 cut(s) 105, 346, 545, 735
Hpy8I GTNNAC 2 cut(s) 259, 311
Hpy99I CGWCG 1 cut(s) 736
HpyAV CCTTC 2 cut(s) 416, 532
HpyCH4V TGCA 7 cut(s) 178, 183, 245, 398, 440, 571, 587
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 175, 180, 189, 437, 728
HpyF3I CTNAG 2 cut(s) 17, 300
Hsp92II CATG 3 cut(s) 192, 245, 251
HspAI GCGC 2 cut(s) 202, 698
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 4 cut(s) 342, 358, 541, 636
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 3 cut(s) 81, 643, 695
Lsp1109I GCAGC 2 cut(s) 186, 424
MaeI CTAG 3 cut(s) 293, 329, 428
MalI GATC 4 cut(s) 344, 360, 543, 638
MboI GATC 4 cut(s) 342, 358, 541, 636
MboII GAAGA 2 cut(s) 58, 155
MluCI AATT 2 cut(s) 214, 489
MlyI GAGTC 2 cut(s) 123, 425
MmeI TCCRAC 1 cut(s) 614
MnlI CCTC 6 cut(s) 6, 12, 133, 349, 481, 499
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 246, 252
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 6 cut(s) 38, 175, 180, 189, 437, 728
NdeII GATC 4 cut(s) 342, 358, 541, 636
NlaIII CATG 3 cut(s) 192, 245, 251
NmeAIII GCCGAG 1 cut(s) 529
NspI RCATGY 2 cut(s) 245, 251
PaeI GCATGC 1 cut(s) 245
PciI ACATGT 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 455, 688
PkrI GCNGC 4 cut(s) 201, 439, 630, 684
PleI GAGTC 2 cut(s) 122, 424
PpsI GAGTC 2 cut(s) 122, 424
PscI ACATGT 1 cut(s) 247
PspFI CCCAGC 2 cut(s) 600, 700
PspPI GGNCC 1 cut(s) 714
PstI CTGCAG 2 cut(s) 400, 442
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 2 cut(s) 246, 252
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 4 cut(s) 200, 438, 629, 683
Sau3AI GATC 4 cut(s) 342, 358, 541, 636
Sau96I GGNCC 1 cut(s) 714
SchI GAGTC 2 cut(s) 123, 425
SetI ASST 6 cut(s) 53, 78, 171, 294, 520, 716
SfcI CTRYAG 2 cut(s) 396, 438
SinI GGWCC 1 cut(s) 714
SmiMI CAYNNNNRTG 2 cut(s) 246, 252
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 214, 489
SsiI CCGC 4 cut(s) 628, 667, 682, 685
SspMI CTAG 3 cut(s) 293, 329, 428
TaqI TCGA 3 cut(s) 112, 142, 148
TasI AATT 2 cut(s) 214, 489
TauI GCSGC 2 cut(s) 631, 685
TfiI GAWTC 2 cut(s) 455, 688
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 185, 439, 465
TseI GCWGC 2 cut(s) 199, 437
TspDTI ATGAA 2 cut(s) 510, 551
TspGWI ACGGA 1 cut(s) 706
TspRI CASTG 3 cut(s) 185, 439, 465
VpaK11BI GGWCC 1 cut(s) 714
XceI RCATGY 2 cut(s) 245, 251
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 3 cut(s) 293, 329, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.