pycom05g18430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014610
Physical Location & Seq
Forward (+)
21357913 .. 21358625
713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18430.1

Sequence Viewer

Length: 648 bp
ATGTCAAACGCAATCTCTCTAGCAGCTTATAAAAAAAGCCATTCTCCACAAACTCTTCGCAAACCCTACTTATCCATGTCTTGCTTGAGATTGAGGCTTCCACCAGCCAGAAGAGCTTGGAAGAGCTTCACCTCCAAACTACAGAGGAAACTCCACAAGCCTAAAGGCATCGCTAAACCCCGTAAAAACAGTGTCAAAGCAATTACTGCTGCTGCCTCATCTTCTGCTTCTCCTTCTGCTTTTGCTTTTTCTTCTGTTGGACTGAAACCCTACAAGTTTCTCCGGCTGCGTTTTAAACGCAAAGGGCGTCTCGCCCTACATTTTCGTTACAACCGGCGCCAACTTCTTCAGAACCGTGGTAGCGCTGCGCATGTCTACGTTGACAAGCTTTTTAAAGAGCCTGGTGTGACTGATCTGGTGGGTAGTTCTGAGCCTCCGGTAGCGAAGTGCAAGCAAGCTACCACTGCTGCTGCCGGTGCTGAAAGTGGGGCTGAGAGAGGATGTCCTGCGACGGCGGATGATATGTGGGAGTCATTGGGATTTGCTTCCCCAATGATGCACGGGATTGACGAAAGAGCTGAGGAGTTCATAGCCAAATTTAGAAAGGACATGGAGGTTCAGGAGAAGTTGGCACGTGATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

216

Amino Acids

23.9

Weight (kDa)

10.42

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 189 - 207 3.1e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20500
fragaria_vesca FvH4_2g21490
malus_domestica MD05G1197200.v1.1
prunus_persica Prupe.8G223700_v2.0.a1
pyrus_communis pycom05g18430 pycom10g15920
rosa_chinensis RchiOBHm_Chr6g0288121
rosa_laevigata RLG00000012436
rosa_multiflora Rmu_sc0001851.1_g000029 Rmu_sc0010766.1_g000005
rosa_roxburghii Rroxscaffold_7G00180480
rosa_rugosa Rorug06G0194400.1
rosa_samantha Rh6AG304600 Rh6BG310600 Rh6CG318700 Rh6DG303600
rosa_wichuraiana Rw6G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
Acc16I TGCGCA 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 336
AccI GTMKAC 1 cut(s) 375
AciI CCGC 1 cut(s) 515
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 332
AcvI CACGTG 1 cut(s) 635
AcyI GRCGYC 2 cut(s) 307, 337
AfeI AGCGCT 1 cut(s) 364
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 6 cut(s) 26, 116, 126, 388, 458, 578
AluI AGCT 6 cut(s) 26, 116, 126, 388, 458, 578
Alw26I GTCTC 1 cut(s) 314
Aor51HI AGCGCT 1 cut(s) 364
ApeKI GCWGC 7 cut(s) 23, 209, 212, 286, 365, 467, 470
ApoI RAATTY 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 125
AspLEI GCGC 3 cut(s) 339, 365, 370
AsuHPI GGTGA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 635
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 7 cut(s) 35, 196, 199, 273, 352, 454, 457
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 1 cut(s) 402
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 2 cut(s) 340, 366
BisI GCNGC 7 cut(s) 24, 210, 213, 287, 366, 468, 471
BlsI GCNGC 7 cut(s) 25, 211, 214, 288, 367, 469, 472
Bme1390I CCNGG 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 177, 546
Bpu10I CCTNAGC 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 635
BsaHI GRCGYC 2 cut(s) 307, 337
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 436
Bse118I RCCGGY 2 cut(s) 333, 473
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 506, 523
BseMII CTCAG 3 cut(s) 420, 483, 570
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 7 cut(s) 35, 196, 199, 273, 352, 454, 457
BshNI GGYRCC 1 cut(s) 336
BsiSI CCGG 4 cut(s) 283, 334, 437, 474
BsmAI GTCTC 1 cut(s) 314
BsmBI CGTCTC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 412, 637
BspACI CCGC 1 cut(s) 515
BspCNI CTCAG 3 cut(s) 421, 484, 571
BspLI GGNNCC 1 cut(s) 338
BspQI GCTCTTC 2 cut(s) 106, 116
BspT107I GGYRCC 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 333, 473
BssAI RCCGGY 2 cut(s) 333, 473
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 412, 637
BssNI GRCGYC 2 cut(s) 307, 337
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 191, 356
Bst6I CTCTTC 3 cut(s) 60, 106, 116
BstACI GRCGYC 2 cut(s) 307, 337
BstAPI GCANNNNNTGC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 452, 456
BstDEI CTNAG 3 cut(s) 429, 492, 579
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 2 cut(s) 506, 523
BstH2I RGCGCY 2 cut(s) 340, 366
BstHHI GCGC 3 cut(s) 339, 365, 370
BstKTI GATC 2 cut(s) 415, 640
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 412, 637
BstMWI GCNNNNNNNGC 4 cut(s) 113, 206, 464, 476
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 7 cut(s) 35, 196, 199, 273, 352, 454, 457
BtgI CCRYGG 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 2 cut(s) 506, 523
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 2 cut(s) 196, 462
Cac8I GCNNGC 2 cut(s) 452, 456
CfoI GCGC 3 cut(s) 339, 365, 370
Cfr10I RCCGGY 2 cut(s) 333, 473
CseI GACGC 1 cut(s) 296
CviAII CATG 3 cut(s) 76, 371, 610
DdeI CTNAG 3 cut(s) 429, 492, 579
DinI GGCGCC 1 cut(s) 338
DpnI GATC 2 cut(s) 414, 639
DpnII GATC 2 cut(s) 412, 637
DraI TTTAAA 2 cut(s) 295, 394
Eam1104I CTCTTC 3 cut(s) 60, 106, 116
EarI CTCTTC 3 cut(s) 60, 106, 116
EciI GGCGGA 1 cut(s) 530
Eco47III AGCGCT 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 332
Eco72I CACGTG 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 400
EgeI GGCGCC 1 cut(s) 338
EheI GGCGCC 1 cut(s) 338
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 3 cut(s) 79, 374, 613
FaiI YATR 6 cut(s) 30, 77, 372, 524, 590, 611
FatI CATG 3 cut(s) 75, 370, 609
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 7 cut(s) 24, 210, 213, 287, 366, 468, 471
FokI GGATG 2 cut(s) 513, 530
Fsp4HI GCNGC 7 cut(s) 24, 210, 213, 287, 366, 468, 471
FspBI CTAG 1 cut(s) 20
FspI TGCGCA 1 cut(s) 369
GlaI GCGC 3 cut(s) 338, 364, 369
GluI GCNGC 7 cut(s) 24, 210, 213, 287, 366, 468, 471
HaeII RGCGCY 2 cut(s) 340, 366
HapII CCGG 4 cut(s) 283, 334, 437, 474
HgaI GACGC 1 cut(s) 296
HhaI GCGC 3 cut(s) 339, 365, 370
Hin1I GRCGYC 2 cut(s) 307, 337
Hin1II CATG 3 cut(s) 79, 374, 613
Hin6I GCGC 3 cut(s) 337, 363, 368
HinP1I GCGC 3 cut(s) 337, 363, 368
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 1 cut(s) 530
HpaII CCGG 4 cut(s) 283, 334, 437, 474
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 376, 382
Hpy188I TCNGA 2 cut(s) 351, 430
Hpy188III TCNNGA 1 cut(s) 620
Hpy8I GTNNAC 2 cut(s) 376, 382
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 2 cut(s) 191, 356
HpyCH4IV ACGT 2 cut(s) 378, 634
HpyCH4V TGCA 2 cut(s) 450, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 206, 464, 476
HpyF3I CTNAG 3 cut(s) 429, 492, 579
HpySE526I ACGT 2 cut(s) 378, 634
Hsp92I GRCGYC 2 cut(s) 307, 337
Hsp92II CATG 3 cut(s) 79, 374, 613
HspAI GCGC 3 cut(s) 337, 363, 368
KasI GGCGCC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 2 cut(s) 412, 637
LguI GCTCTTC 2 cut(s) 106, 116
Lsp1109I GCAGC 7 cut(s) 35, 196, 199, 273, 352, 454, 457
LweI GCATC 2 cut(s) 177, 546
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 378, 634
MaeIII GTNAC 2 cut(s) 326, 406
MalI GATC 2 cut(s) 414, 639
MboI GATC 2 cut(s) 412, 637
MboII GAAGA 6 cut(s) 47, 123, 133, 213, 243, 338
MluCI AATT 2 cut(s) 201, 596
Mly113I GGCGCC 1 cut(s) 337
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 8 cut(s) 87, 138, 142, 226, 444, 491, 574, 607
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 294, 393
MspI CCGG 4 cut(s) 283, 334, 437, 474
MspR9I CCNGG 1 cut(s) 402
MteI GCGCNGCGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 4 cut(s) 113, 206, 464, 476
NarI GGCGCC 1 cut(s) 337
NdeII GATC 2 cut(s) 412, 637
NlaIII CATG 3 cut(s) 79, 374, 613
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 406
NsbI TGCGCA 1 cut(s) 369
NspI RCATGY 1 cut(s) 374
PciSI GCTCTTC 2 cut(s) 106, 116
PcsI WCGNNNNNNNCGW 2 cut(s) 304, 567
PdmI GAANNNNTTC 1 cut(s) 125
PkrI GCNGC 7 cut(s) 25, 211, 214, 288, 367, 469, 472
PleI GAGTC 1 cut(s) 538
PluTI GGCGCC 1 cut(s) 340
PmaCI CACGTG 1 cut(s) 635
PmlI CACGTG 1 cut(s) 635
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 635
PsiI TTATAA 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 400
PspCI CACGTG 1 cut(s) 635
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 338
SapI GCTCTTC 2 cut(s) 106, 116
SaqAI TTAA 2 cut(s) 294, 393
SatI GCNGC 7 cut(s) 24, 210, 213, 287, 366, 468, 471
Sau3AI GATC 2 cut(s) 412, 637
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 402
SfaNI GCATC 2 cut(s) 177, 546
SfcI CTRYAG 1 cut(s) 140
SfoI GGCGCC 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 2 cut(s) 201, 596
SsiI CCGC 1 cut(s) 515
SspDI GGCGCC 1 cut(s) 336
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 400
TaaI ACNGT 2 cut(s) 191, 356
TaiI ACGT 2 cut(s) 381, 637
TasI AATT 2 cut(s) 201, 596
Tru1I TTAA 2 cut(s) 294, 393
Tru9I TTAA 2 cut(s) 294, 393
TscAI CASTG 2 cut(s) 196, 469
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 7 cut(s) 23, 209, 212, 286, 365, 467, 470
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 577
TspRI CASTG 2 cut(s) 196, 469
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.