Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31240 |
| fragaria_vesca | FvH4_2g21700 FvH4_2g21700 FvH4_2g21700 |
| malus_domestica | MD05G1199500.v1.1 |
| prunus_persica | Prupe.8G225300_v2.0.a1 |
| pyrus_communis | pycom05g18590 pycom10g16070 |
| rosa_chinensis | RchiOBHm_Chr6g0288381 |
| rosa_laevigata | RLG00000012409 |
| rosa_multiflora | Rmu_sc0001038.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00180110 |
| rosa_rugosa | Rorug06G0196100 |
| rosa_samantha | Rh6AG307000 Rh6BG313000 Rh6CG320800 Rh6DG306200 |
| rosa_wichuraiana | Rw6G026560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 909 |
| AccII | CGCG | 2 cut(s) | 221, 1616 |
| AciI | CCGC | 5 cut(s) | 659, 818, 1034, 1251, 1469 |
| AcsI | RAATTY | 3 cut(s) | 892, 1227, 1782 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AfaI | GTAC | 1 cut(s) | 313 |
| AflIII | ACRYGT | 1 cut(s) | 978 |
| AgeI | ACCGGT | 1 cut(s) | 941 |
| AhlI | ACTAGT | 1 cut(s) | 1144 |
| AjnI | CCWGG | 3 cut(s) | 393, 1136, 1877 |
| Alw21I | GWGCWC | 2 cut(s) | 1756, 1886 |
| Alw26I | GTCTC | 5 cut(s) | 1016, 1127, 1295, 1313, 1444 |
| Alw44I | GTGCAC | 1 cut(s) | 1752 |
| AoxI | GGCC | 6 cut(s) | 357, 438, 644, 963, 1562, 1845 |
| ApaLI | GTGCAC | 1 cut(s) | 1752 |
| ApeKI | GCWGC | 4 cut(s) | 922, 1541, 1574, 1714 |
| ApoI | RAATTY | 3 cut(s) | 892, 1227, 1782 |
| AseI | ATTAAT | 1 cut(s) | 1089 |
| AsiGI | ACCGGT | 1 cut(s) | 941 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 496, 1396 |
| AspLEI | GCGC | 3 cut(s) | 223, 910, 1618 |
| AspS9I | GGNCC | 5 cut(s) | 406, 438, 1496, 1622, 1745 |
| AsuC2I | CCSGG | 1 cut(s) | 1256 |
| AsuHPI | GGTGA | 5 cut(s) | 117, 130, 413, 661, 763 |
| AvaII | GGWCC | 4 cut(s) | 406, 1496, 1622, 1745 |
| BaeGI | GKGCMC | 2 cut(s) | 1144, 1756 |
| BanII | GRGCYC | 2 cut(s) | 384, 1886 |
| BbsI | GAAGAC | 2 cut(s) | 279, 692 |
| Bbv12I | GWGCWC | 2 cut(s) | 1756, 1886 |
| BbvCI | CCTCAGC | 2 cut(s) | 804, 1269 |
| BbvI | GCAGC | 4 cut(s) | 909, 1553, 1561, 1726 |
| BccI | CCATC | 7 cut(s) | 39, 205, 523, 688, 835, 1153, 1879 |
| BceAI | ACGGC | 1 cut(s) | 705 |
| BciT130I | CCWGG | 3 cut(s) | 395, 1138, 1879 |
| BcnI | CCSGG | 1 cut(s) | 1256 |
| BcoDI | GTCTC | 5 cut(s) | 1016, 1127, 1295, 1313, 1444 |
| BcuI | ACTAGT | 1 cut(s) | 1144 |
| BfaI | CTAG | 5 cut(s) | 435, 540, 591, 1145, 1404 |
| BisI | GCNGC | 6 cut(s) | 923, 1251, 1470, 1542, 1575, 1715 |
| BlsI | GCNGC | 6 cut(s) | 924, 1252, 1471, 1543, 1576, 1716 |
| Bme1390I | CCNGG | 4 cut(s) | 395, 1138, 1256, 1879 |
| Bme18I | GGWCC | 4 cut(s) | 406, 1496, 1622, 1745 |
| BmgT120I | GGNCC | 5 cut(s) | 406, 438, 1496, 1622, 1745 |
| BmiI | GGNNCC | 2 cut(s) | 408, 1498 |
| BmrFI | CCNGG | 4 cut(s) | 395, 1138, 1256, 1879 |
| BmrI | ACTGGG | 1 cut(s) | 127 |
| BmsI | GCATC | 5 cut(s) | 297, 642, 1186, 1666, 1717 |
| BmuI | ACTGGG | 1 cut(s) | 127 |
| BpiI | GAAGAC | 2 cut(s) | 279, 692 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1262, 1294 |
| Bpu10I | CCTNAGC | 2 cut(s) | 804, 1269 |
| BpuEI | CTTGAG | 4 cut(s) | 220, 368, 1356, 1379 |
| BpuMI | CCSGG | 1 cut(s) | 1256 |
| BsaI | GGTCTC | 3 cut(s) | 1016, 1127, 1444 |
| BsaJI | CCNNGG | 7 cut(s) | 157, 252, 360, 966, 1137, 1254, 1810 |
| BsaWI | WCCGGW | 1 cut(s) | 941 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 740, 770 |
| Bse118I | RCCGGY | 4 cut(s) | 646, 941, 1430, 1560 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| Bse3DI | GCAATG | 2 cut(s) | 519, 1352 |
| BseBI | CCWGG | 3 cut(s) | 395, 1138, 1879 |
| BseDI | CCNNGG | 7 cut(s) | 157, 252, 360, 966, 1137, 1254, 1810 |
| BseGI | GGATG | 3 cut(s) | 643, 1615, 1867 |
| BseMI | GCAATG | 2 cut(s) | 519, 1352 |
| BseMII | CTCAG | 6 cut(s) | 716, 795, 1260, 1293, 1377, 1580 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseRI | GAGGAG | 6 cut(s) | 54, 629, 632, 715, 722, 965 |
| BseSI | GKGCMC | 2 cut(s) | 1144, 1756 |
| BseXI | GCAGC | 4 cut(s) | 909, 1553, 1561, 1726 |
| BsgI | GTGCAG | 3 cut(s) | 130, 683, 1560 |
| Bsh1236I | CGCG | 2 cut(s) | 221, 1616 |
| BshFI | GGCC | 6 cut(s) | 359, 440, 646, 965, 1564, 1847 |
| BshTI | ACCGGT | 1 cut(s) | 941 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1756, 1886 |
| BsiSI | CCGG | 5 cut(s) | 647, 942, 1256, 1431, 1561 |
| BslFI | GGGAC | 2 cut(s) | 1482, 1828 |
| BsmAI | GTCTC | 5 cut(s) | 1016, 1127, 1295, 1313, 1444 |
| BsmFI | GGGAC | 2 cut(s) | 1482, 1828 |
| BsnI | GGCC | 6 cut(s) | 359, 440, 646, 965, 1564, 1847 |
| Bso31I | GGTCTC | 3 cut(s) | 1016, 1127, 1444 |
| Bsp1286I | GDGCHC | 4 cut(s) | 384, 1144, 1756, 1886 |
| Bsp143I | GATC | 1 cut(s) | 265 |
| Bsp19I | CCATGG | 1 cut(s) | 157 |
| BspACI | CCGC | 5 cut(s) | 659, 818, 1034, 1251, 1469 |
| BspANI | GGCC | 6 cut(s) | 359, 440, 646, 965, 1564, 1847 |
| BspCNI | CTCAG | 6 cut(s) | 717, 796, 1261, 1292, 1378, 1579 |
| BspFNI | CGCG | 2 cut(s) | 221, 1616 |
| BspLI | GGNNCC | 2 cut(s) | 408, 1498 |
| BspTNI | GGTCTC | 3 cut(s) | 1016, 1127, 1444 |
| BsrDI | GCAATG | 2 cut(s) | 519, 1352 |
| BsrFI | RCCGGY | 4 cut(s) | 646, 941, 1430, 1560 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssAI | RCCGGY | 4 cut(s) | 646, 941, 1430, 1560 |
| BssECI | CCNNGG | 7 cut(s) | 157, 252, 360, 966, 1137, 1254, 1810 |
| BssMI | GATC | 1 cut(s) | 265 |
| BssT1I | CCWWGG | 4 cut(s) | 157, 252, 360, 966 |
| Bst2UI | CCWGG | 3 cut(s) | 395, 1138, 1879 |
| Bst4CI | ACNGT | 2 cut(s) | 1335, 1446 |
| Bst6I | CTCTTC | 5 cut(s) | 29, 72, 297, 548, 1785 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 661, 1676 |
| BstC8I | GCNNGC | 4 cut(s) | 357, 657, 675, 1651 |
| BstDEI | CTNAG | 6 cut(s) | 725, 804, 1269, 1279, 1386, 1566 |
| BstDSI | CCRYGG | 2 cut(s) | 157, 1810 |
| BstF5I | GGATG | 3 cut(s) | 643, 1615, 1867 |
| BstFNI | CGCG | 2 cut(s) | 221, 1616 |
| BstHHI | GCGC | 3 cut(s) | 223, 910, 1618 |
| BstKTI | GATC | 1 cut(s) | 268 |
| BstMAI | GTCTC | 5 cut(s) | 1016, 1127, 1295, 1313, 1444 |
| BstMBI | GATC | 1 cut(s) | 265 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 437, 446, 596, 652, 661, 670, 815, 1363, 1676 |
| BstNI | CCWGG | 3 cut(s) | 395, 1138, 1879 |
| BstNSI | RCATGY | 3 cut(s) | 659, 982, 1653 |
| BstSCI | CCNGG | 4 cut(s) | 393, 1136, 1254, 1877 |
| BstSLI | GKGCMC | 2 cut(s) | 1144, 1756 |
| BstUI | CGCG | 2 cut(s) | 221, 1616 |
| BstV1I | GCAGC | 4 cut(s) | 909, 1553, 1561, 1726 |
| BstV2I | GAAGAC | 2 cut(s) | 279, 692 |
| BsuRI | GGCC | 6 cut(s) | 359, 440, 646, 965, 1564, 1847 |
| BtgI | CCRYGG | 2 cut(s) | 157, 1810 |
| BtgZI | GCGATG | 2 cut(s) | 707, 854 |
| BtsCI | GGATG | 3 cut(s) | 643, 1615, 1867 |
| BtsIMutI | CAGTG | 1 cut(s) | 1331 |
| Cac8I | GCNNGC | 4 cut(s) | 357, 657, 675, 1651 |
| CfoI | GCGC | 3 cut(s) | 223, 910, 1618 |
| Cfr10I | RCCGGY | 4 cut(s) | 646, 941, 1430, 1560 |
| Cfr13I | GGNCC | 5 cut(s) | 406, 438, 1496, 1622, 1745 |
| CseI | GACGC | 2 cut(s) | 284, 1091 |
| Csp6I | GTAC | 1 cut(s) | 312 |
| CspAI | ACCGGT | 1 cut(s) | 941 |
| CviQI | GTAC | 1 cut(s) | 312 |
| DdeI | CTNAG | 6 cut(s) | 725, 804, 1269, 1279, 1386, 1566 |
| DpnI | GATC | 1 cut(s) | 267 |
| DpnII | GATC | 1 cut(s) | 265 |
| Eam1104I | CTCTTC | 5 cut(s) | 29, 72, 297, 548, 1785 |
| EarI | CTCTTC | 5 cut(s) | 29, 72, 297, 548, 1785 |
| Ecl136II | GAGCTC | 1 cut(s) | 1884 |
| Eco130I | CCWWGG | 4 cut(s) | 157, 252, 360, 966 |
| Eco147I | AGGCCT | 2 cut(s) | 965, 1847 |
| Eco24I | GRGCYC | 2 cut(s) | 384, 1886 |
| Eco31I | GGTCTC | 3 cut(s) | 1016, 1127, 1444 |
| Eco47I | GGWCC | 4 cut(s) | 406, 1496, 1622, 1745 |
| Eco53kI | GAGCTC | 1 cut(s) | 1884 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| EcoICRI | GAGCTC | 1 cut(s) | 1884 |
| EcoO109I | RGGNCCY | 2 cut(s) | 406, 438 |
| EcoRI | GAATTC | 3 cut(s) | 892, 1227, 1782 |
| EcoRII | CCWGG | 3 cut(s) | 393, 1136, 1877 |
| EcoT14I | CCWWGG | 4 cut(s) | 157, 252, 360, 966 |
| EcoT22I | ATGCAT | 1 cut(s) | 657 |
| EcoT38I | GRGCYC | 2 cut(s) | 384, 1886 |
| ErhI | CCWWGG | 4 cut(s) | 157, 252, 360, 966 |
| FaqI | GGGAC | 2 cut(s) | 1482, 1828 |
| FauNDI | CATATG | 1 cut(s) | 1672 |
| Fnu4HI | GCNGC | 6 cut(s) | 923, 1251, 1470, 1542, 1575, 1715 |
| FokI | GGATG | 3 cut(s) | 650, 1622, 1854 |
| FriOI | GRGCYC | 2 cut(s) | 384, 1886 |
| Fsp4HI | GCNGC | 6 cut(s) | 923, 1251, 1470, 1542, 1575, 1715 |
| FspBI | CTAG | 5 cut(s) | 435, 540, 591, 1145, 1404 |
| FspI | TGCGCA | 1 cut(s) | 909 |
| GlaI | GCGC | 3 cut(s) | 222, 909, 1617 |
| GluI | GCNGC | 6 cut(s) | 923, 1251, 1470, 1542, 1575, 1715 |
| HaeIII | GGCC | 6 cut(s) | 359, 440, 646, 965, 1564, 1847 |
| HapII | CCGG | 5 cut(s) | 647, 942, 1256, 1431, 1561 |
| HgaI | GACGC | 2 cut(s) | 284, 1091 |
| HhaI | GCGC | 3 cut(s) | 223, 910, 1618 |
| Hin6I | GCGC | 3 cut(s) | 221, 908, 1616 |
| HinP1I | GCGC | 3 cut(s) | 221, 908, 1616 |
| HincII | GTYRAC | 1 cut(s) | 1428 |
| HindII | GTYRAC | 1 cut(s) | 1428 |
| HindIII | AAGCTT | 2 cut(s) | 386, 417 |
| HinfI | GANTC | 6 cut(s) | 332, 721, 868, 1043, 1637, 1738 |
| HpaII | CCGG | 5 cut(s) | 647, 942, 1256, 1431, 1561 |
| HphI | GGTGA | 5 cut(s) | 117, 130, 413, 661, 763 |
| Hpy166II | GTNNAC | 4 cut(s) | 138, 1428, 1625, 1754 |
| Hpy188III | TCNNGA | 8 cut(s) | 75, 201, 269, 1156, 1181, 1232, 1373, 1787 |
| Hpy8I | GTNNAC | 4 cut(s) | 138, 1428, 1625, 1754 |
| HpyAV | CCTTC | 7 cut(s) | 117, 392, 778, 850, 955, 985, 1093 |
| HpyCH4III | ACNGT | 2 cut(s) | 1335, 1446 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 437, 446, 596, 652, 661, 670, 815, 1363, 1676 |
| HpyF3I | CTNAG | 6 cut(s) | 725, 804, 1269, 1279, 1386, 1566 |
| HspAI | GCGC | 3 cut(s) | 221, 908, 1616 |
| Kzo9I | GATC | 1 cut(s) | 265 |
| LmnI | GCTCC | 7 cut(s) | 67, 670, 775, 952, 970, 1371, 1881 |
| Lsp1109I | GCAGC | 4 cut(s) | 909, 1553, 1561, 1726 |
| LweI | GCATC | 5 cut(s) | 297, 642, 1186, 1666, 1717 |
| MaeI | CTAG | 5 cut(s) | 435, 540, 591, 1145, 1404 |
| MaeIII | GTNAC | 1 cut(s) | 1416 |
| MalI | GATC | 1 cut(s) | 267 |
| MboI | GATC | 1 cut(s) | 265 |
| MfeI | CAATTG | 1 cut(s) | 524 |
| MhlI | GDGCHC | 4 cut(s) | 384, 1144, 1756, 1886 |
| MlyI | GAGTC | 2 cut(s) | 341, 1747 |
| MmeI | TCCRAC | 4 cut(s) | 591, 648, 738, 843 |
| Mph1103I | ATGCAT | 1 cut(s) | 657 |
| MroXI | GAANNNNTTC | 2 cut(s) | 496, 1396 |
| MseI | TTAA | 7 cut(s) | 164, 444, 561, 744, 831, 1089, 1337 |
| MslI | CAYNNNNRTG | 2 cut(s) | 283, 1509 |
| MspA1I | CMGCKG | 1 cut(s) | 1574 |
| MspI | CCGG | 5 cut(s) | 647, 942, 1256, 1431, 1561 |
| MspR9I | CCNGG | 4 cut(s) | 395, 1138, 1256, 1879 |
| MunI | CAATTG | 1 cut(s) | 524 |
| MvaI | CCWGG | 3 cut(s) | 395, 1138, 1879 |
| MvnI | CGCG | 2 cut(s) | 221, 1616 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 437, 446, 596, 652, 661, 670, 815, 1363, 1676 |
| NciI | CCSGG | 1 cut(s) | 1256 |
| NcoI | CCATGG | 1 cut(s) | 157 |
| NdeI | CATATG | 1 cut(s) | 1672 |
| NdeII | GATC | 1 cut(s) | 265 |
| NlaIV | GGNNCC | 2 cut(s) | 408, 1498 |
| NsbI | TGCGCA | 1 cut(s) | 909 |
| NsiI | ATGCAT | 1 cut(s) | 657 |
| NspI | RCATGY | 3 cut(s) | 659, 982, 1653 |
| PaeI | GCATGC | 2 cut(s) | 659, 1653 |
| PceI | AGGCCT | 2 cut(s) | 965, 1847 |
| PciI | ACATGT | 1 cut(s) | 978 |
| PdmI | GAANNNNTTC | 2 cut(s) | 496, 1396 |
| PfeI | GAWTC | 4 cut(s) | 721, 868, 1043, 1637 |
| PinAI | ACCGGT | 1 cut(s) | 941 |
| PkrI | GCNGC | 6 cut(s) | 924, 1252, 1471, 1543, 1576, 1716 |
| PleI | GAGTC | 2 cut(s) | 340, 1746 |
| PpsI | GAGTC | 2 cut(s) | 340, 1746 |
| PpuMI | RGGWCCY | 1 cut(s) | 406 |
| PscI | ACATGT | 1 cut(s) | 978 |
| PshBI | ATTAAT | 1 cut(s) | 1089 |
| Psp124BI | GAGCTC | 1 cut(s) | 1886 |
| Psp5II | RGGWCCY | 1 cut(s) | 406 |
| Psp6I | CCWGG | 3 cut(s) | 393, 1136, 1877 |
| PspGI | CCWGG | 3 cut(s) | 393, 1136, 1877 |
| PspN4I | GGNNCC | 2 cut(s) | 408, 1498 |
| PspPI | GGNCC | 5 cut(s) | 406, 438, 1496, 1622, 1745 |
| PspPPI | RGGWCCY | 1 cut(s) | 406 |
| PvuII | CAGCTG | 1 cut(s) | 1574 |
| RsaI | GTAC | 1 cut(s) | 313 |
| RsaNI | GTAC | 1 cut(s) | 312 |
| RseI | CAYNNNNRTG | 2 cut(s) | 283, 1509 |
| SacI | GAGCTC | 1 cut(s) | 1886 |
| SaqAI | TTAA | 7 cut(s) | 164, 444, 561, 744, 831, 1089, 1337 |
| SatI | GCNGC | 6 cut(s) | 923, 1251, 1470, 1542, 1575, 1715 |
| Sau3AI | GATC | 1 cut(s) | 265 |
| Sau96I | GGNCC | 5 cut(s) | 406, 438, 1496, 1622, 1745 |
| SchI | GAGTC | 2 cut(s) | 341, 1747 |
| ScrFI | CCNGG | 4 cut(s) | 395, 1138, 1256, 1879 |
| SduI | GDGCHC | 4 cut(s) | 384, 1144, 1756, 1886 |
| SfaNI | GCATC | 5 cut(s) | 297, 642, 1186, 1666, 1717 |
| SinI | GGWCC | 4 cut(s) | 406, 1496, 1622, 1745 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 283, 1509 |
| SmlI | CTYRAG | 4 cut(s) | 235, 383, 1358, 1371 |
| SmoI | CTYRAG | 4 cut(s) | 235, 383, 1358, 1371 |
| SpeI | ACTAGT | 1 cut(s) | 1144 |
| SphI | GCATGC | 2 cut(s) | 659, 1653 |
| SseBI | AGGCCT | 2 cut(s) | 965, 1847 |
| SsiI | CCGC | 5 cut(s) | 659, 818, 1034, 1251, 1469 |
| SspMI | CTAG | 5 cut(s) | 435, 540, 591, 1145, 1404 |
| SstI | GAGCTC | 1 cut(s) | 1886 |
| StuI | AGGCCT | 2 cut(s) | 965, 1847 |
| StyD4I | CCNGG | 4 cut(s) | 393, 1136, 1254, 1877 |
| StyI | CCWWGG | 4 cut(s) | 157, 252, 360, 966 |
| TaaI | ACNGT | 2 cut(s) | 1335, 1446 |
| TaqI | TCGA | 3 cut(s) | 202, 1157, 1644 |
| TauI | GCSGC | 2 cut(s) | 1253, 1472 |
| TfiI | GAWTC | 4 cut(s) | 721, 868, 1043, 1637 |
| Tru1I | TTAA | 7 cut(s) | 164, 444, 561, 744, 831, 1089, 1337 |
| Tru9I | TTAA | 7 cut(s) | 164, 444, 561, 744, 831, 1089, 1337 |
| TscAI | CASTG | 1 cut(s) | 1338 |
| TseI | GCWGC | 4 cut(s) | 922, 1541, 1574, 1714 |
| TspDTI | ATGAA | 6 cut(s) | 99, 245, 860, 1322, 1697, 1776 |
| TspGWI | ACGGA | 1 cut(s) | 1133 |
| TspRI | CASTG | 1 cut(s) | 1338 |
| VneI | GTGCAC | 1 cut(s) | 1752 |
| VpaK11BI | GGWCC | 4 cut(s) | 406, 1496, 1622, 1745 |
| VspI | ATTAAT | 1 cut(s) | 1089 |
| XapI | RAATTY | 3 cut(s) | 892, 1227, 1782 |
| XceI | RCATGY | 3 cut(s) | 659, 982, 1653 |
| XmnI | GAANNNNTTC | 2 cut(s) | 496, 1396 |
| XspI | CTAG | 5 cut(s) | 435, 540, 591, 1145, 1404 |
| Zsp2I | ATGCAT | 1 cut(s) | 657 |