Rmu_sc0001038.1_g000010

Tetratricopeptide repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001038.1
Physical Location & Seq
Reverse (-)
53289 .. 55708
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001038.1_g000010.1.cds

Sequence Viewer

Length: 2055 bp
atgagtctattgaacggcgtcgtttcggtttctcatcgccttctacttcgccgacctcaaaggctcaaagtcaccccaaaattcagtgcgagggtttatgcaaaagggtttaacagaaaggtagaacccacaaaacctcacccagttccgaccatgagaaagtcttcaatctcactcttctcccatctcagtcgtcggagttccaaatcctttgctcctcttctctccagaaattacatttctgaccctctctgttcctcttcatcttcttcttcgcccacccggttcaggccctgcaccaaactccatggcttgttcttcaaaaacacccaattccaagcaaacccatctcgaaacatggacaccctcgcgcctcaaatgtcctcaaggcagagaaaaatcaaggaaaggtccgagcttgaagacgcatttgaatcagcgactacttccgaagagatgcgtagggctttcaaggaaatggagtcggttttcggagagaaagagctggccttggcttgtttgaaacttgggctcaagcttgaccaagaaggtgaggaccctgaacagactctctcttttgctactagggcctttaatgcttttgataaacaagatgatgatagggatagtagtagtggtaataagccttcgtttcttgttgcaatggctttacaattgatgggttctgctaattatagcttgaagaggtttaatgatagtttggggtatctgaatagggctaataggatgttgggtaggttagaggaggagggttgtaatgttggggatattaggccggtgcttcatgccgtgcagttggaattggcgaatgtgaagacggcgatggggaggagagaggaggctcttgagaatctgaggaagtgtttggagattaaggaggtgatgctggagagagatagtaaggaacttggcaaggccaaccgggacttggctgaggcttatgttgcggttttgaactttaaggaggcgttgggattctgtaggaaggccttggagattcataaagaacagttggggcagaactcagtggaggttgcacatgacaggaggcttcttggggttatttatactgggttggaggagcatgagaaggccttggagcaaaacatgttgtcacagaaggttttgaagaattggggtcttggttctgatttgcttcgtgcggagattgattctgcgaatatgcagattgcactggggaagtatgatgacgctattaatactttgaagggtgttgttcagcaaacggataaggatagtgagacaagggcactagtgtttatctcgatgggtaaagcattatgtaatcaggaaaagctttcggatgcaaagagatgtttggagattgcttgtggaattcttgacaagaaagagagagccgccccggtagatgttgccgaggcatactcagaaatatcaatgcaatacgagacaatgaacgagtttgaaactgcaatttcactgttaaagaggacattggcattgcttgagaagctccctcaagaacaacattctgagggaagtgtttctgctaggatagggtggttacttctgttgactggcaaggtctcacaggctattccgtacttggagagtgcagctgagagattgaaagagagctttgggcccaagcattttggtgtgggctatatttacaacaacttgggggcagcatatttggaactagaccggcctcagtcagctgcacagatgtttgctgtcgcaaaggacatcatggatgtcgcacttggtccacatcatgcagattcaattgaggcatgccagaacctctcaaaagcatatgatgccatgaaaagctatgcccttgcaatccaattccagcagcaagtagttgatgcttgggagaaccatggaccaagtgctcatgacgaactcagagaagcacagcgacttcttgaagagttgaggaaaaaagcccgtggtacattcttaaatgatgagcgaaccatcaaggccttgcccttgccccaaactcatccatctgccaggagctcacaagctgacttcctgtga

Protein Analysis

684

Amino Acids

76.67

Weight (kDa)

8.33

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31240
fragaria_vesca FvH4_2g21700 FvH4_2g21700 FvH4_2g21700
malus_domestica MD05G1199500.v1.1
prunus_persica Prupe.8G225300_v2.0.a1
pyrus_communis pycom05g18590 pycom10g16070
rosa_chinensis RchiOBHm_Chr6g0288381
rosa_laevigata RLG00000012409
rosa_multiflora Rmu_sc0001038.1_g000010
rosa_roxburghii Rroxscaffold_7G00180110
rosa_rugosa Rorug06G0196100
rosa_samantha Rh6AG307000 Rh6BG313000 Rh6CG320800 Rh6DG306200
rosa_wichuraiana Rw6G026560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 371
AciI CCGC 3 cut(s) 968, 1184, 1401
AcsI RAATTY 2 cut(s) 80, 1377
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 2 cut(s) 1607, 1966
AfiI CCNNNNNNNGG 2 cut(s) 288, 949
AflIII ACRYGT 1 cut(s) 1128
AhlI ACTAGT 1 cut(s) 1294
AjnI CCWGG 1 cut(s) 2027
Alw21I GWGCWC 2 cut(s) 1906, 2036
Alw26I GTCTC 3 cut(s) 1277, 1445, 1594
AlwNI CAGNNNCTG 1 cut(s) 294
ApaI GGGCCC 1 cut(s) 1650
ApeKI GCWGC 4 cut(s) 1619, 1691, 1724, 1864
ApoI RAATTY 2 cut(s) 80, 1377
AseI ATTAAT 1 cut(s) 1239
Asp700I GAANNNNTTC 2 cut(s) 163, 1546
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 8 cut(s) 291, 411, 556, 588, 1646, 1647, 1772, 1895
AsuC2I CCSGG 3 cut(s) 283, 944, 1406
AsuHPI GGTGA 4 cut(s) 64, 131, 563, 913
AvaII GGWCC 4 cut(s) 411, 556, 1772, 1895
BaeGI GKGCMC 2 cut(s) 1294, 1650
BanII GRGCYC 3 cut(s) 534, 1650, 2036
BarI GAAGNNNNNNTAC 2 cut(s) 631, 663
BbsI GAAGAC 3 cut(s) 156, 429, 842
Bbv12I GWGCWC 2 cut(s) 1906, 2036
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 4 cut(s) 1631, 1703, 1711, 1876
BccI CCATC 7 cut(s) 192, 355, 673, 838, 1303, 1997, 2029
BceAI ACGGC 3 cut(s) 31, 794, 855
BciT130I CCWGG 1 cut(s) 2029
BcnI CCSGG 3 cut(s) 283, 944, 1406
BcoDI GTCTC 3 cut(s) 1277, 1445, 1594
BcuI ACTAGT 1 cut(s) 1294
BfaI CTAG 4 cut(s) 585, 1295, 1554, 1706
BfmI CTRYAG 1 cut(s) 1000
BisI GCNGC 5 cut(s) 1401, 1620, 1692, 1725, 1865
BlsI GCNGC 5 cut(s) 1402, 1621, 1693, 1726, 1866
Bme1390I CCNGG 4 cut(s) 283, 944, 1406, 2029
Bme18I GGWCC 4 cut(s) 411, 556, 1772, 1895
BmgT120I GGNCC 8 cut(s) 291, 411, 556, 588, 1646, 1647, 1772, 1895
BmiI GGNNCC 2 cut(s) 558, 1648
BmrFI CCNGG 4 cut(s) 283, 944, 1406, 2029
BmrI ACTGGG 3 cut(s) 137, 1101, 1226
BmsI GCATC 5 cut(s) 447, 894, 1336, 1816, 1867
BmuI ACTGGG 3 cut(s) 137, 1101, 1226
BpiI GAAGAC 3 cut(s) 156, 429, 842
BplI GAGNNNNNCTC 2 cut(s) 1412, 1444
BpmI CTGGAG 2 cut(s) 211, 929
Bpu10I CCTNAGC 1 cut(s) 954
BpuEI CTTGAG 5 cut(s) 370, 518, 887, 1506, 1529
BpuMI CCSGG 3 cut(s) 283, 944, 1406
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 1594
BsaJI CCNNGG 8 cut(s) 307, 510, 1011, 1116, 1404, 1419, 1891, 1960
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 949
Bse118I RCCGGY 2 cut(s) 796, 1710
Bse1I ACTGG 4 cut(s) 143, 1096, 1221, 1585
Bse3DI GCAATG 2 cut(s) 669, 1502
BseBI CCWGG 1 cut(s) 2029
BseDI CCNNGG 8 cut(s) 307, 510, 1011, 1116, 1404, 1419, 1891, 1960
BseGI GGATG 4 cut(s) 753, 1351, 1765, 2017
BseLI CCNNNNNNNGG 2 cut(s) 288, 949
BseMI GCAATG 2 cut(s) 669, 1502
BseMII CTCAG 9 cut(s) 202, 866, 945, 1059, 1443, 1527, 1614, 1730, 1930
BseNI ACTGG 4 cut(s) 143, 1096, 1221, 1585
BseRI GAGGAG 6 cut(s) 207, 779, 782, 865, 872, 1115
BseSI GKGCMC 2 cut(s) 1294, 1650
BseXI GCAGC 4 cut(s) 1631, 1703, 1711, 1876
BsgI GTGCAG 4 cut(s) 280, 833, 1638, 1710
Bsh1236I CGCG 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 1906, 2036
BsiSI CCGG 5 cut(s) 283, 797, 943, 1406, 1711
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 2 cut(s) 288, 949
BsmAI GTCTC 3 cut(s) 1277, 1445, 1594
BsmFI GGGAC 1 cut(s) 959
Bso31I GGTCTC 1 cut(s) 1594
Bsp120I GGGCCC 1 cut(s) 1646
Bsp1286I GDGCHC 5 cut(s) 534, 1294, 1650, 1906, 2036
Bsp19I CCATGG 2 cut(s) 307, 1891
BspACI CCGC 3 cut(s) 968, 1184, 1401
BspCNI CTCAG 9 cut(s) 201, 867, 946, 1058, 1442, 1528, 1615, 1729, 1929
BspFNI CGCG 1 cut(s) 371
BspHI TCATGA 1 cut(s) 1906
BspLI GGNNCC 2 cut(s) 558, 1648
BspTNI GGTCTC 1 cut(s) 1594
BsrDI GCAATG 2 cut(s) 669, 1502
BsrFI RCCGGY 2 cut(s) 796, 1710
BsrI ACTGG 4 cut(s) 143, 1096, 1221, 1585
BssAI RCCGGY 2 cut(s) 796, 1710
BssECI CCNNGG 8 cut(s) 307, 510, 1011, 1116, 1404, 1419, 1891, 1960
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 5 cut(s) 307, 510, 1011, 1116, 1891
Bst2UI CCWGG 1 cut(s) 2029
Bst4CI ACNGT 2 cut(s) 1032, 1485
Bst6I CTCTTC 6 cut(s) 182, 225, 265, 447, 698, 1935
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1826
BstC8I GCNNGC 2 cut(s) 507, 1801
BstDEI CTNAG 9 cut(s) 188, 875, 954, 1045, 1429, 1536, 1623, 1716, 1916
BstDSI CCRYGG 3 cut(s) 307, 1891, 1960
BstF5I GGATG 4 cut(s) 753, 1351, 1765, 2017
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 373
BstMAI GTCTC 3 cut(s) 1277, 1445, 1594
BstMWI GCNNNNNNNGC 5 cut(s) 587, 596, 965, 1513, 1826
BstNI CCWGG 1 cut(s) 2029
BstNSI RCATGY 2 cut(s) 1132, 1803
BstSCI CCNGG 4 cut(s) 281, 942, 1404, 2027
BstSFI CTRYAG 1 cut(s) 1000
BstSLI GKGCMC 2 cut(s) 1294, 1650
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 4 cut(s) 1631, 1703, 1711, 1876
BstV2I GAAGAC 3 cut(s) 156, 429, 842
BtgI CCRYGG 3 cut(s) 307, 1891, 1960
BtgZI GCGATG 2 cut(s) 20, 857
BtsCI GGATG 4 cut(s) 753, 1351, 1765, 2017
BtsIMutI CAGTG 4 cut(s) 91, 1053, 1214, 1481
Cac8I GCNNGC 2 cut(s) 507, 1801
CaiI CAGNNNCTG 1 cut(s) 294
CciI TCATGA 1 cut(s) 1906
CfoI GCGC 1 cut(s) 373
Cfr10I RCCGGY 2 cut(s) 796, 1710
Cfr13I GGNCC 8 cut(s) 291, 411, 556, 588, 1646, 1647, 1772, 1895
CseI GACGC 3 cut(s) 7, 434, 1241
Csp6I GTAC 2 cut(s) 1606, 1965
CviQI GTAC 2 cut(s) 1606, 1965
DdeI CTNAG 9 cut(s) 188, 875, 954, 1045, 1429, 1536, 1623, 1716, 1916
Eam1104I CTCTTC 6 cut(s) 182, 225, 265, 447, 698, 1935
EarI CTCTTC 6 cut(s) 182, 225, 265, 447, 698, 1935
Ecl136II GAGCTC 1 cut(s) 2034
Eco130I CCWWGG 5 cut(s) 307, 510, 1011, 1116, 1891
Eco147I AGGCCT 3 cut(s) 1010, 1115, 1997
Eco24I GRGCYC 3 cut(s) 534, 1650, 2036
Eco31I GGTCTC 1 cut(s) 1594
Eco47I GGWCC 4 cut(s) 411, 556, 1772, 1895
Eco53kI GAGCTC 1 cut(s) 2034
EcoICRI GAGCTC 1 cut(s) 2034
EcoO109I RGGNCCY 3 cut(s) 291, 556, 588
EcoRI GAATTC 1 cut(s) 1377
EcoRII CCWGG 1 cut(s) 2027
EcoT14I CCWWGG 5 cut(s) 307, 510, 1011, 1116, 1891
EcoT38I GRGCYC 3 cut(s) 534, 1650, 2036
ErhI CCWWGG 5 cut(s) 307, 510, 1011, 1116, 1891
FaqI GGGAC 1 cut(s) 959
FauNDI CATATG 1 cut(s) 1822
Fnu4HI GCNGC 5 cut(s) 1401, 1620, 1692, 1725, 1865
FokI GGATG 4 cut(s) 760, 1358, 1772, 2004
FriOI GRGCYC 3 cut(s) 534, 1650, 2036
Fsp4HI GCNGC 5 cut(s) 1401, 1620, 1692, 1725, 1865
FspBI CTAG 4 cut(s) 585, 1295, 1554, 1706
GlaI GCGC 1 cut(s) 372
GluI GCNGC 5 cut(s) 1401, 1620, 1692, 1725, 1865
GsuI CTGGAG 2 cut(s) 211, 929
HapII CCGG 5 cut(s) 283, 797, 943, 1406, 1711
HgaI GACGC 3 cut(s) 7, 434, 1241
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 1 cut(s) 1578
HindII GTYRAC 1 cut(s) 1578
HindIII AAGCTT 2 cut(s) 536, 1337
HinfI GANTC 9 cut(s) 4, 434, 482, 568, 871, 996, 1018, 1193, 1787
HpaII CCGG 5 cut(s) 283, 797, 943, 1406, 1711
HphI GGTGA 4 cut(s) 64, 131, 563, 913
Hpy166II GTNNAC 2 cut(s) 1578, 1775
Hpy188III TCNNGA 9 cut(s) 228, 351, 866, 1306, 1331, 1382, 1523, 1907, 1937
Hpy8I GTNNAC 2 cut(s) 1578, 1775
Hpy99I CGWCG 2 cut(s) 23, 198
HpyAV CCTTC 7 cut(s) 50, 542, 657, 1000, 1105, 1135, 1243
HpyCH4III ACNGT 2 cut(s) 1032, 1485
HpyF10VI GCNNNNNNNGC 5 cut(s) 587, 596, 965, 1513, 1826
HpyF3I CTNAG 9 cut(s) 188, 875, 954, 1045, 1429, 1536, 1623, 1716, 1916
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 1 cut(s) 371
LmnI GCTCC 5 cut(s) 220, 1102, 1120, 1521, 2031
Lsp1109I GCAGC 4 cut(s) 1631, 1703, 1711, 1876
LweI GCATC 5 cut(s) 447, 894, 1336, 1816, 1867
MaeI CTAG 4 cut(s) 585, 1295, 1554, 1706
MaeIII GTNAC 3 cut(s) 70, 1134, 1566
MfeI CAATTG 2 cut(s) 674, 1791
MhlI GDGCHC 5 cut(s) 534, 1294, 1650, 1906, 2036
MlyI GAGTC 3 cut(s) 13, 491, 562
MmeI TCCRAC 4 cut(s) 173, 176, 798, 1077
MroXI GAANNNNTTC 2 cut(s) 163, 1546
MseI TTAA 8 cut(s) 111, 594, 711, 894, 981, 1239, 1487, 1973
MslI CAYNNNNRTG 1 cut(s) 1659
MspA1I CMGCKG 2 cut(s) 1622, 1724
MspI CCGG 5 cut(s) 283, 797, 943, 1406, 1711
MspR9I CCNGG 4 cut(s) 283, 944, 1406, 2029
MunI CAATTG 2 cut(s) 674, 1791
MvaI CCWGG 1 cut(s) 2029
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 5 cut(s) 587, 596, 965, 1513, 1826
NciI CCSGG 3 cut(s) 283, 944, 1406
NcoI CCATGG 2 cut(s) 307, 1891
NdeI CATATG 1 cut(s) 1822
NlaIV GGNNCC 2 cut(s) 558, 1648
NmeAIII GCCGAG 1 cut(s) 1444
NmuCI GTSAC 2 cut(s) 70, 1134
NspI RCATGY 2 cut(s) 1132, 1803
PaeI GCATGC 1 cut(s) 1803
PagI TCATGA 1 cut(s) 1906
PceI AGGCCT 3 cut(s) 1010, 1115, 1997
PciI ACATGT 1 cut(s) 1128
PdmI GAANNNNTTC 2 cut(s) 163, 1546
PfeI GAWTC 6 cut(s) 434, 871, 996, 1018, 1193, 1787
PkrI GCNGC 5 cut(s) 1402, 1621, 1693, 1726, 1866
PleI GAGTC 3 cut(s) 12, 490, 562
PpsI GAGTC 3 cut(s) 12, 490, 562
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 1128
PshBI ATTAAT 1 cut(s) 1239
Psp124BI GAGCTC 1 cut(s) 2036
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 2027
PspGI CCWGG 1 cut(s) 2027
PspN4I GGNNCC 2 cut(s) 558, 1648
PspOMI GGGCCC 1 cut(s) 1646
PspPI GGNCC 8 cut(s) 291, 411, 556, 588, 1646, 1647, 1772, 1895
PspPPI RGGWCCY 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 294
PvuII CAGCTG 2 cut(s) 1622, 1724
RsaI GTAC 2 cut(s) 1607, 1966
RsaNI GTAC 2 cut(s) 1606, 1965
RseI CAYNNNNRTG 1 cut(s) 1659
SacI GAGCTC 1 cut(s) 2036
SaqAI TTAA 8 cut(s) 111, 594, 711, 894, 981, 1239, 1487, 1973
SatI GCNGC 5 cut(s) 1401, 1620, 1692, 1725, 1865
Sau96I GGNCC 8 cut(s) 291, 411, 556, 588, 1646, 1647, 1772, 1895
SchI GAGTC 3 cut(s) 13, 491, 562
ScrFI CCNGG 4 cut(s) 283, 944, 1406, 2029
SduI GDGCHC 5 cut(s) 534, 1294, 1650, 1906, 2036
SfaNI GCATC 5 cut(s) 447, 894, 1336, 1816, 1867
SfcI CTRYAG 1 cut(s) 1000
SinI GGWCC 4 cut(s) 411, 556, 1772, 1895
SmiMI CAYNNNNRTG 1 cut(s) 1659
SmlI CTYRAG 5 cut(s) 385, 533, 866, 1508, 1521
SmoI CTYRAG 5 cut(s) 385, 533, 866, 1508, 1521
SpeI ACTAGT 1 cut(s) 1294
SphI GCATGC 1 cut(s) 1803
SseBI AGGCCT 3 cut(s) 1010, 1115, 1997
SsiI CCGC 3 cut(s) 968, 1184, 1401
SspMI CTAG 4 cut(s) 585, 1295, 1554, 1706
SstI GAGCTC 1 cut(s) 2036
StuI AGGCCT 3 cut(s) 1010, 1115, 1997
StyD4I CCNGG 4 cut(s) 281, 942, 1404, 2027
StyI CCWWGG 5 cut(s) 307, 510, 1011, 1116, 1891
TaaI ACNGT 2 cut(s) 1032, 1485
TaqI TCGA 2 cut(s) 352, 1307
TauI GCSGC 1 cut(s) 1403
TfiI GAWTC 6 cut(s) 434, 871, 996, 1018, 1193, 1787
Tru1I TTAA 8 cut(s) 111, 594, 711, 894, 981, 1239, 1487, 1973
Tru9I TTAA 8 cut(s) 111, 594, 711, 894, 981, 1239, 1487, 1973
TscAI CASTG 4 cut(s) 91, 1053, 1221, 1488
TseFI GTSAC 2 cut(s) 70, 1134
TseI GCWGC 4 cut(s) 1619, 1691, 1724, 1864
Tsp45I GTSAC 2 cut(s) 70, 1134
TspDTI ATGAA 5 cut(s) 252, 794, 1010, 1472, 1847
TspGWI ACGGA 2 cut(s) 1283, 1593
TspRI CASTG 4 cut(s) 91, 1053, 1221, 1488
VpaK11BI GGWCC 4 cut(s) 411, 556, 1772, 1895
VspI ATTAAT 1 cut(s) 1239
XapI RAATTY 2 cut(s) 80, 1377
XceI RCATGY 2 cut(s) 1132, 1803
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmnI GAANNNNTTC 2 cut(s) 163, 1546
XspI CTAG 4 cut(s) 585, 1295, 1554, 1706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.