Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31240 |
| fragaria_vesca | FvH4_2g21700 FvH4_2g21700 FvH4_2g21700 |
| malus_domestica | MD05G1199500.v1.1 |
| prunus_persica | Prupe.8G225300_v2.0.a1 |
| pyrus_communis | pycom05g18590 pycom10g16070 |
| rosa_chinensis | RchiOBHm_Chr6g0288381 |
| rosa_laevigata | RLG00000012409 |
| rosa_multiflora | Rmu_sc0001038.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00180110 |
| rosa_rugosa | Rorug06G0196100 |
| rosa_samantha | Rh6AG307000 Rh6BG313000 Rh6CG320800 Rh6DG306200 |
| rosa_wichuraiana | Rw6G026560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 371 |
| AciI | CCGC | 3 cut(s) | 968, 1184, 1401 |
| AcsI | RAATTY | 2 cut(s) | 80, 1377 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AfaI | GTAC | 2 cut(s) | 1607, 1966 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 288, 949 |
| AflIII | ACRYGT | 1 cut(s) | 1128 |
| AhlI | ACTAGT | 1 cut(s) | 1294 |
| AjnI | CCWGG | 1 cut(s) | 2027 |
| Alw21I | GWGCWC | 2 cut(s) | 1906, 2036 |
| Alw26I | GTCTC | 3 cut(s) | 1277, 1445, 1594 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 294 |
| ApaI | GGGCCC | 1 cut(s) | 1650 |
| ApeKI | GCWGC | 4 cut(s) | 1619, 1691, 1724, 1864 |
| ApoI | RAATTY | 2 cut(s) | 80, 1377 |
| AseI | ATTAAT | 1 cut(s) | 1239 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 163, 1546 |
| AspLEI | GCGC | 1 cut(s) | 373 |
| AspS9I | GGNCC | 8 cut(s) | 291, 411, 556, 588, 1646, 1647, 1772, 1895 |
| AsuC2I | CCSGG | 3 cut(s) | 283, 944, 1406 |
| AsuHPI | GGTGA | 4 cut(s) | 64, 131, 563, 913 |
| AvaII | GGWCC | 4 cut(s) | 411, 556, 1772, 1895 |
| BaeGI | GKGCMC | 2 cut(s) | 1294, 1650 |
| BanII | GRGCYC | 3 cut(s) | 534, 1650, 2036 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 631, 663 |
| BbsI | GAAGAC | 3 cut(s) | 156, 429, 842 |
| Bbv12I | GWGCWC | 2 cut(s) | 1906, 2036 |
| BbvCI | CCTCAGC | 1 cut(s) | 954 |
| BbvI | GCAGC | 4 cut(s) | 1631, 1703, 1711, 1876 |
| BccI | CCATC | 7 cut(s) | 192, 355, 673, 838, 1303, 1997, 2029 |
| BceAI | ACGGC | 3 cut(s) | 31, 794, 855 |
| BciT130I | CCWGG | 1 cut(s) | 2029 |
| BcnI | CCSGG | 3 cut(s) | 283, 944, 1406 |
| BcoDI | GTCTC | 3 cut(s) | 1277, 1445, 1594 |
| BcuI | ACTAGT | 1 cut(s) | 1294 |
| BfaI | CTAG | 4 cut(s) | 585, 1295, 1554, 1706 |
| BfmI | CTRYAG | 1 cut(s) | 1000 |
| BisI | GCNGC | 5 cut(s) | 1401, 1620, 1692, 1725, 1865 |
| BlsI | GCNGC | 5 cut(s) | 1402, 1621, 1693, 1726, 1866 |
| Bme1390I | CCNGG | 4 cut(s) | 283, 944, 1406, 2029 |
| Bme18I | GGWCC | 4 cut(s) | 411, 556, 1772, 1895 |
| BmgT120I | GGNCC | 8 cut(s) | 291, 411, 556, 588, 1646, 1647, 1772, 1895 |
| BmiI | GGNNCC | 2 cut(s) | 558, 1648 |
| BmrFI | CCNGG | 4 cut(s) | 283, 944, 1406, 2029 |
| BmrI | ACTGGG | 3 cut(s) | 137, 1101, 1226 |
| BmsI | GCATC | 5 cut(s) | 447, 894, 1336, 1816, 1867 |
| BmuI | ACTGGG | 3 cut(s) | 137, 1101, 1226 |
| BpiI | GAAGAC | 3 cut(s) | 156, 429, 842 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1412, 1444 |
| BpmI | CTGGAG | 2 cut(s) | 211, 929 |
| Bpu10I | CCTNAGC | 1 cut(s) | 954 |
| BpuEI | CTTGAG | 5 cut(s) | 370, 518, 887, 1506, 1529 |
| BpuMI | CCSGG | 3 cut(s) | 283, 944, 1406 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BsaI | GGTCTC | 1 cut(s) | 1594 |
| BsaJI | CCNNGG | 8 cut(s) | 307, 510, 1011, 1116, 1404, 1419, 1891, 1960 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 288, 949 |
| Bse118I | RCCGGY | 2 cut(s) | 796, 1710 |
| Bse1I | ACTGG | 4 cut(s) | 143, 1096, 1221, 1585 |
| Bse3DI | GCAATG | 2 cut(s) | 669, 1502 |
| BseBI | CCWGG | 1 cut(s) | 2029 |
| BseDI | CCNNGG | 8 cut(s) | 307, 510, 1011, 1116, 1404, 1419, 1891, 1960 |
| BseGI | GGATG | 4 cut(s) | 753, 1351, 1765, 2017 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 288, 949 |
| BseMI | GCAATG | 2 cut(s) | 669, 1502 |
| BseMII | CTCAG | 9 cut(s) | 202, 866, 945, 1059, 1443, 1527, 1614, 1730, 1930 |
| BseNI | ACTGG | 4 cut(s) | 143, 1096, 1221, 1585 |
| BseRI | GAGGAG | 6 cut(s) | 207, 779, 782, 865, 872, 1115 |
| BseSI | GKGCMC | 2 cut(s) | 1294, 1650 |
| BseXI | GCAGC | 4 cut(s) | 1631, 1703, 1711, 1876 |
| BsgI | GTGCAG | 4 cut(s) | 280, 833, 1638, 1710 |
| Bsh1236I | CGCG | 1 cut(s) | 371 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1906, 2036 |
| BsiSI | CCGG | 5 cut(s) | 283, 797, 943, 1406, 1711 |
| BslFI | GGGAC | 1 cut(s) | 959 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 288, 949 |
| BsmAI | GTCTC | 3 cut(s) | 1277, 1445, 1594 |
| BsmFI | GGGAC | 1 cut(s) | 959 |
| Bso31I | GGTCTC | 1 cut(s) | 1594 |
| Bsp120I | GGGCCC | 1 cut(s) | 1646 |
| Bsp1286I | GDGCHC | 5 cut(s) | 534, 1294, 1650, 1906, 2036 |
| Bsp19I | CCATGG | 2 cut(s) | 307, 1891 |
| BspACI | CCGC | 3 cut(s) | 968, 1184, 1401 |
| BspCNI | CTCAG | 9 cut(s) | 201, 867, 946, 1058, 1442, 1528, 1615, 1729, 1929 |
| BspFNI | CGCG | 1 cut(s) | 371 |
| BspHI | TCATGA | 1 cut(s) | 1906 |
| BspLI | GGNNCC | 2 cut(s) | 558, 1648 |
| BspTNI | GGTCTC | 1 cut(s) | 1594 |
| BsrDI | GCAATG | 2 cut(s) | 669, 1502 |
| BsrFI | RCCGGY | 2 cut(s) | 796, 1710 |
| BsrI | ACTGG | 4 cut(s) | 143, 1096, 1221, 1585 |
| BssAI | RCCGGY | 2 cut(s) | 796, 1710 |
| BssECI | CCNNGG | 8 cut(s) | 307, 510, 1011, 1116, 1404, 1419, 1891, 1960 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| BssT1I | CCWWGG | 5 cut(s) | 307, 510, 1011, 1116, 1891 |
| Bst2UI | CCWGG | 1 cut(s) | 2029 |
| Bst4CI | ACNGT | 2 cut(s) | 1032, 1485 |
| Bst6I | CTCTTC | 6 cut(s) | 182, 225, 265, 447, 698, 1935 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1826 |
| BstC8I | GCNNGC | 2 cut(s) | 507, 1801 |
| BstDEI | CTNAG | 9 cut(s) | 188, 875, 954, 1045, 1429, 1536, 1623, 1716, 1916 |
| BstDSI | CCRYGG | 3 cut(s) | 307, 1891, 1960 |
| BstF5I | GGATG | 4 cut(s) | 753, 1351, 1765, 2017 |
| BstFNI | CGCG | 1 cut(s) | 371 |
| BstHHI | GCGC | 1 cut(s) | 373 |
| BstMAI | GTCTC | 3 cut(s) | 1277, 1445, 1594 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 587, 596, 965, 1513, 1826 |
| BstNI | CCWGG | 1 cut(s) | 2029 |
| BstNSI | RCATGY | 2 cut(s) | 1132, 1803 |
| BstSCI | CCNGG | 4 cut(s) | 281, 942, 1404, 2027 |
| BstSFI | CTRYAG | 1 cut(s) | 1000 |
| BstSLI | GKGCMC | 2 cut(s) | 1294, 1650 |
| BstUI | CGCG | 1 cut(s) | 371 |
| BstV1I | GCAGC | 4 cut(s) | 1631, 1703, 1711, 1876 |
| BstV2I | GAAGAC | 3 cut(s) | 156, 429, 842 |
| BtgI | CCRYGG | 3 cut(s) | 307, 1891, 1960 |
| BtgZI | GCGATG | 2 cut(s) | 20, 857 |
| BtsCI | GGATG | 4 cut(s) | 753, 1351, 1765, 2017 |
| BtsIMutI | CAGTG | 4 cut(s) | 91, 1053, 1214, 1481 |
| Cac8I | GCNNGC | 2 cut(s) | 507, 1801 |
| CaiI | CAGNNNCTG | 1 cut(s) | 294 |
| CciI | TCATGA | 1 cut(s) | 1906 |
| CfoI | GCGC | 1 cut(s) | 373 |
| Cfr10I | RCCGGY | 2 cut(s) | 796, 1710 |
| Cfr13I | GGNCC | 8 cut(s) | 291, 411, 556, 588, 1646, 1647, 1772, 1895 |
| CseI | GACGC | 3 cut(s) | 7, 434, 1241 |
| Csp6I | GTAC | 2 cut(s) | 1606, 1965 |
| CviQI | GTAC | 2 cut(s) | 1606, 1965 |
| DdeI | CTNAG | 9 cut(s) | 188, 875, 954, 1045, 1429, 1536, 1623, 1716, 1916 |
| Eam1104I | CTCTTC | 6 cut(s) | 182, 225, 265, 447, 698, 1935 |
| EarI | CTCTTC | 6 cut(s) | 182, 225, 265, 447, 698, 1935 |
| Ecl136II | GAGCTC | 1 cut(s) | 2034 |
| Eco130I | CCWWGG | 5 cut(s) | 307, 510, 1011, 1116, 1891 |
| Eco147I | AGGCCT | 3 cut(s) | 1010, 1115, 1997 |
| Eco24I | GRGCYC | 3 cut(s) | 534, 1650, 2036 |
| Eco31I | GGTCTC | 1 cut(s) | 1594 |
| Eco47I | GGWCC | 4 cut(s) | 411, 556, 1772, 1895 |
| Eco53kI | GAGCTC | 1 cut(s) | 2034 |
| EcoICRI | GAGCTC | 1 cut(s) | 2034 |
| EcoO109I | RGGNCCY | 3 cut(s) | 291, 556, 588 |
| EcoRI | GAATTC | 1 cut(s) | 1377 |
| EcoRII | CCWGG | 1 cut(s) | 2027 |
| EcoT14I | CCWWGG | 5 cut(s) | 307, 510, 1011, 1116, 1891 |
| EcoT38I | GRGCYC | 3 cut(s) | 534, 1650, 2036 |
| ErhI | CCWWGG | 5 cut(s) | 307, 510, 1011, 1116, 1891 |
| FaqI | GGGAC | 1 cut(s) | 959 |
| FauNDI | CATATG | 1 cut(s) | 1822 |
| Fnu4HI | GCNGC | 5 cut(s) | 1401, 1620, 1692, 1725, 1865 |
| FokI | GGATG | 4 cut(s) | 760, 1358, 1772, 2004 |
| FriOI | GRGCYC | 3 cut(s) | 534, 1650, 2036 |
| Fsp4HI | GCNGC | 5 cut(s) | 1401, 1620, 1692, 1725, 1865 |
| FspBI | CTAG | 4 cut(s) | 585, 1295, 1554, 1706 |
| GlaI | GCGC | 1 cut(s) | 372 |
| GluI | GCNGC | 5 cut(s) | 1401, 1620, 1692, 1725, 1865 |
| GsuI | CTGGAG | 2 cut(s) | 211, 929 |
| HapII | CCGG | 5 cut(s) | 283, 797, 943, 1406, 1711 |
| HgaI | GACGC | 3 cut(s) | 7, 434, 1241 |
| HhaI | GCGC | 1 cut(s) | 373 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| Hin6I | GCGC | 1 cut(s) | 371 |
| HinP1I | GCGC | 1 cut(s) | 371 |
| HincII | GTYRAC | 1 cut(s) | 1578 |
| HindII | GTYRAC | 1 cut(s) | 1578 |
| HindIII | AAGCTT | 2 cut(s) | 536, 1337 |
| HinfI | GANTC | 9 cut(s) | 4, 434, 482, 568, 871, 996, 1018, 1193, 1787 |
| HpaII | CCGG | 5 cut(s) | 283, 797, 943, 1406, 1711 |
| HphI | GGTGA | 4 cut(s) | 64, 131, 563, 913 |
| Hpy166II | GTNNAC | 2 cut(s) | 1578, 1775 |
| Hpy188III | TCNNGA | 9 cut(s) | 228, 351, 866, 1306, 1331, 1382, 1523, 1907, 1937 |
| Hpy8I | GTNNAC | 2 cut(s) | 1578, 1775 |
| Hpy99I | CGWCG | 2 cut(s) | 23, 198 |
| HpyAV | CCTTC | 7 cut(s) | 50, 542, 657, 1000, 1105, 1135, 1243 |
| HpyCH4III | ACNGT | 2 cut(s) | 1032, 1485 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 587, 596, 965, 1513, 1826 |
| HpyF3I | CTNAG | 9 cut(s) | 188, 875, 954, 1045, 1429, 1536, 1623, 1716, 1916 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| HspAI | GCGC | 1 cut(s) | 371 |
| LmnI | GCTCC | 5 cut(s) | 220, 1102, 1120, 1521, 2031 |
| Lsp1109I | GCAGC | 4 cut(s) | 1631, 1703, 1711, 1876 |
| LweI | GCATC | 5 cut(s) | 447, 894, 1336, 1816, 1867 |
| MaeI | CTAG | 4 cut(s) | 585, 1295, 1554, 1706 |
| MaeIII | GTNAC | 3 cut(s) | 70, 1134, 1566 |
| MfeI | CAATTG | 2 cut(s) | 674, 1791 |
| MhlI | GDGCHC | 5 cut(s) | 534, 1294, 1650, 1906, 2036 |
| MlyI | GAGTC | 3 cut(s) | 13, 491, 562 |
| MmeI | TCCRAC | 4 cut(s) | 173, 176, 798, 1077 |
| MroXI | GAANNNNTTC | 2 cut(s) | 163, 1546 |
| MseI | TTAA | 8 cut(s) | 111, 594, 711, 894, 981, 1239, 1487, 1973 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1659 |
| MspA1I | CMGCKG | 2 cut(s) | 1622, 1724 |
| MspI | CCGG | 5 cut(s) | 283, 797, 943, 1406, 1711 |
| MspR9I | CCNGG | 4 cut(s) | 283, 944, 1406, 2029 |
| MunI | CAATTG | 2 cut(s) | 674, 1791 |
| MvaI | CCWGG | 1 cut(s) | 2029 |
| MvnI | CGCG | 1 cut(s) | 371 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 587, 596, 965, 1513, 1826 |
| NciI | CCSGG | 3 cut(s) | 283, 944, 1406 |
| NcoI | CCATGG | 2 cut(s) | 307, 1891 |
| NdeI | CATATG | 1 cut(s) | 1822 |
| NlaIV | GGNNCC | 2 cut(s) | 558, 1648 |
| NmeAIII | GCCGAG | 1 cut(s) | 1444 |
| NmuCI | GTSAC | 2 cut(s) | 70, 1134 |
| NspI | RCATGY | 2 cut(s) | 1132, 1803 |
| PaeI | GCATGC | 1 cut(s) | 1803 |
| PagI | TCATGA | 1 cut(s) | 1906 |
| PceI | AGGCCT | 3 cut(s) | 1010, 1115, 1997 |
| PciI | ACATGT | 1 cut(s) | 1128 |
| PdmI | GAANNNNTTC | 2 cut(s) | 163, 1546 |
| PfeI | GAWTC | 6 cut(s) | 434, 871, 996, 1018, 1193, 1787 |
| PkrI | GCNGC | 5 cut(s) | 1402, 1621, 1693, 1726, 1866 |
| PleI | GAGTC | 3 cut(s) | 12, 490, 562 |
| PpsI | GAGTC | 3 cut(s) | 12, 490, 562 |
| PpuMI | RGGWCCY | 1 cut(s) | 556 |
| PscI | ACATGT | 1 cut(s) | 1128 |
| PshBI | ATTAAT | 1 cut(s) | 1239 |
| Psp124BI | GAGCTC | 1 cut(s) | 2036 |
| Psp5II | RGGWCCY | 1 cut(s) | 556 |
| Psp6I | CCWGG | 1 cut(s) | 2027 |
| PspGI | CCWGG | 1 cut(s) | 2027 |
| PspN4I | GGNNCC | 2 cut(s) | 558, 1648 |
| PspOMI | GGGCCC | 1 cut(s) | 1646 |
| PspPI | GGNCC | 8 cut(s) | 291, 411, 556, 588, 1646, 1647, 1772, 1895 |
| PspPPI | RGGWCCY | 1 cut(s) | 556 |
| PstNI | CAGNNNCTG | 1 cut(s) | 294 |
| PvuII | CAGCTG | 2 cut(s) | 1622, 1724 |
| RsaI | GTAC | 2 cut(s) | 1607, 1966 |
| RsaNI | GTAC | 2 cut(s) | 1606, 1965 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1659 |
| SacI | GAGCTC | 1 cut(s) | 2036 |
| SaqAI | TTAA | 8 cut(s) | 111, 594, 711, 894, 981, 1239, 1487, 1973 |
| SatI | GCNGC | 5 cut(s) | 1401, 1620, 1692, 1725, 1865 |
| Sau96I | GGNCC | 8 cut(s) | 291, 411, 556, 588, 1646, 1647, 1772, 1895 |
| SchI | GAGTC | 3 cut(s) | 13, 491, 562 |
| ScrFI | CCNGG | 4 cut(s) | 283, 944, 1406, 2029 |
| SduI | GDGCHC | 5 cut(s) | 534, 1294, 1650, 1906, 2036 |
| SfaNI | GCATC | 5 cut(s) | 447, 894, 1336, 1816, 1867 |
| SfcI | CTRYAG | 1 cut(s) | 1000 |
| SinI | GGWCC | 4 cut(s) | 411, 556, 1772, 1895 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1659 |
| SmlI | CTYRAG | 5 cut(s) | 385, 533, 866, 1508, 1521 |
| SmoI | CTYRAG | 5 cut(s) | 385, 533, 866, 1508, 1521 |
| SpeI | ACTAGT | 1 cut(s) | 1294 |
| SphI | GCATGC | 1 cut(s) | 1803 |
| SseBI | AGGCCT | 3 cut(s) | 1010, 1115, 1997 |
| SsiI | CCGC | 3 cut(s) | 968, 1184, 1401 |
| SspMI | CTAG | 4 cut(s) | 585, 1295, 1554, 1706 |
| SstI | GAGCTC | 1 cut(s) | 2036 |
| StuI | AGGCCT | 3 cut(s) | 1010, 1115, 1997 |
| StyD4I | CCNGG | 4 cut(s) | 281, 942, 1404, 2027 |
| StyI | CCWWGG | 5 cut(s) | 307, 510, 1011, 1116, 1891 |
| TaaI | ACNGT | 2 cut(s) | 1032, 1485 |
| TaqI | TCGA | 2 cut(s) | 352, 1307 |
| TauI | GCSGC | 1 cut(s) | 1403 |
| TfiI | GAWTC | 6 cut(s) | 434, 871, 996, 1018, 1193, 1787 |
| Tru1I | TTAA | 8 cut(s) | 111, 594, 711, 894, 981, 1239, 1487, 1973 |
| Tru9I | TTAA | 8 cut(s) | 111, 594, 711, 894, 981, 1239, 1487, 1973 |
| TscAI | CASTG | 4 cut(s) | 91, 1053, 1221, 1488 |
| TseFI | GTSAC | 2 cut(s) | 70, 1134 |
| TseI | GCWGC | 4 cut(s) | 1619, 1691, 1724, 1864 |
| Tsp45I | GTSAC | 2 cut(s) | 70, 1134 |
| TspDTI | ATGAA | 5 cut(s) | 252, 794, 1010, 1472, 1847 |
| TspGWI | ACGGA | 2 cut(s) | 1283, 1593 |
| TspRI | CASTG | 4 cut(s) | 91, 1053, 1221, 1488 |
| VpaK11BI | GGWCC | 4 cut(s) | 411, 556, 1772, 1895 |
| VspI | ATTAAT | 1 cut(s) | 1239 |
| XapI | RAATTY | 2 cut(s) | 80, 1377 |
| XceI | RCATGY | 2 cut(s) | 1132, 1803 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 946 |
| XmnI | GAANNNNTTC | 2 cut(s) | 163, 1546 |
| XspI | CTAG | 4 cut(s) | 585, 1295, 1554, 1706 |