Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013105

Physical Location & Seq

Genomic Coordinates Reverse (-)

19252093 .. 19252578

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTTTACAATTGATGGGTTCTGTTAATTCTGGATTGAAAAGGTTTAGTGATAGTTTGGGGTACCTTAATAGGGCTAATAGAGCATTGTGTAGATTAGAGGAGGAGGGTTTTGATGTTCGGGATCTTAGGCCAGTGCTACACGCTGTGCAGCTTGAATTGGCGAATGTGAAGACGGCAATGGGGAGGAGAGAGGAGGCTTTGGGGAATCTTATGAAGTGTTTGGAGATTAAGGAATTGATGTTGGAGAAAGATAGTACTGAACTTGGCGAGGGACACTGGGATTTGGCAGAGGCATGTGTAGCTCTTTTGAACTTTAAGGATGCATTAGGATTTTGTATGAAGGCGTTGGAGATTCACAAAGAAAAGTTGGGGAAGAATTCGGTTGAGGTTGCACATGAAGGAGGCTTCTTGCGGTTATTTATACAGGGTTGGAGGAGCATGAGAAGGCGTTGGAGCAAAATGCATTGTCACAAAGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0008150 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0042995 GO:0043226 GO:0044085 GO:0044464 GO:0044782 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0060271 GO:0060828 GO:0065007 GO:0070925 GO:0071840 GO:0090090 GO:0090175 GO:0120025 GO:0120031 GO:0120036 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_8

Protein Analysis

162

Amino Acids

18.35

Weight (kDa)

8.63

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	50 - 121	1.2e-06	Tetratricopeptide repeat
TPR_NPHP3	PF24885	60 - 134	2.7e-06	Nephrocystin-3 TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31240
fragaria_vesca	FvH4_2g21700 FvH4_2g21700 FvH4_2g21700
malus_domestica	MD05G1199500.v1.1
prunus_persica	Prupe.8G225300_v2.0.a1
pyrus_communis	pycom05g18590 pycom10g16070
rosa_chinensis	RchiOBHm_Chr6g0288381
rosa_laevigata	RLG00000012409
rosa_multiflora	Rmu_sc0001038.1_g000010
rosa_roxburghii	Rroxscaffold_7G00180110
rosa_rugosa	Rorug06G0196100
rosa_samantha	Rh6AG307000 Rh6BG313000 Rh6CG320800 Rh6DG306200
rosa_wichuraiana	Rw6G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	63
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	2 cut(s)	65, 259
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	40, 158, 313
AluBI	AGCT	2 cut(s)	154, 305
AluI	AGCT	2 cut(s)	154, 305
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	379
Asp718I	GGTACC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmcAI	AGTACT	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	134, 284
Bse3DI	GCAATG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	134, 284
BseRI	GAGGAG	5 cut(s)	116, 119, 202, 209, 451
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	134, 284
BssMI	GATC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 302
BstNSI	RCATGY	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	141, 277
Csp6I	GTAC	2 cut(s)	64, 258
CviAII	CATG	3 cut(s)	297, 398, 442
CviJI	RGCY	7 cut(s)	5, 77, 133, 154, 200, 305, 408
CviKI_1	RGCY	7 cut(s)	5, 77, 133, 154, 200, 305, 408
CviQI	GTAC	2 cut(s)	64, 258
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	379
EcoT22I	ATGCAT	2 cut(s)	328, 468
FaeI	CATG	3 cut(s)	300, 401, 445
FaiI	YATR	6 cut(s)	215, 298, 341, 399, 425, 443
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	296, 397, 441
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	300, 401, 445
HinfI	GANTC	2 cut(s)	208, 355
Hpy188III	TCNNGA	2 cut(s)	33, 122
HpyAV	CCTTC	3 cut(s)	337, 395, 441
HpyCH4V	TGCA	4 cut(s)	151, 326, 395, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 302
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	300, 401, 445
KpnI	GGTACC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	438, 456
LpnPI	CCDG	4 cut(s)	18, 147, 265, 413
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	184, 388
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	5 cut(s)	11, 28, 158, 236, 379
MmeI	TCCRAC	4 cut(s)	225, 330, 413, 434
Mph1103I	ATGCAT	2 cut(s)	328, 468
MseI	TTAA	4 cut(s)	27, 69, 231, 318
MunI	CAATTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	83, 302
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	300, 401, 445
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	470
NsiI	ATGCAT	2 cut(s)	328, 468
NspI	RCATGY	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	208, 355
PkrI	GCNGC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	2 cut(s)	65, 259
RsaNI	GTAC	2 cut(s)	64, 258
SaqAI	TTAA	4 cut(s)	27, 69, 231, 318
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	259
SetI	ASST	5 cut(s)	47, 69, 156, 307, 393
SfaNI	GCATC	1 cut(s)	313
Sse9I	AATT	5 cut(s)	11, 28, 158, 236, 379
SsiI	CCGC	1 cut(s)	415
TasI	AATT	5 cut(s)	11, 28, 158, 236, 379
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	208, 355
Tru1I	TTAA	4 cut(s)	27, 69, 231, 318
Tru9I	TTAA	4 cut(s)	27, 69, 231, 318
TscAI	CASTG	2 cut(s)	141, 284
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	230, 356, 414
TspRI	CASTG	2 cut(s)	141, 284
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	259
Zsp2I	ATGCAT	2 cut(s)	328, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.