Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013105

Physical Location & Seq

Genomic Coordinates Reverse (-)

32719607 .. 32722309

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1199500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGAGAAAATCTTCAATCTCACTCTTCTCCCACCTCACTCGCCAGAGACTCAAATCCTCAATCCCTCCTCTTCTTTCCAGAAATTACATTTCCGACCGCCCATCCTCCTCCTCCCCCTCTCCGCCGGCGGTCTCACCGGCCCGTTTCAGCCCCTGCGCCATAATTCAGGACTCATTCTTCAAAAGCAGCCAATTCCACACAAACCCATCTCGAAATATGAACACCCTCGTCGAAACATCGCCTCAAATTTCCTCCAGGCAGAGAAAATCCATGGAAAAGTCGGACCTTGAAGAGGCTTTCGAGTCTGCAAAAACCATCGAAGAACTGCTTGCGGCTTTCAAGGCCATGGAGTCGGCTTTCGAAGAGAGGGAGCTCGGCATGGCTGCTCTGAAAGTCGGCCTCAAGCTTGACCATGAAGGTGAGGACCCTGAAAAGGCTCTGTCTTTTGCTACCAGAGCATTGAAGGCTTTGGATAGAGACGATACCGGTAAGCCCTCTTTGGTTGTTGCCATGGCTTTACAGTTAATGGGTTCTGTTAATTATGGATTAAAAAGGTTTAGTGATAGTTTGGGGTACCTTAATAGGGCTAATAGAGCATTGTGTAGATTAGAGGAGGAGGGTTTTGATGTTCGGGATCTTAGACCGGTGCTTCACGCTGTGCAGCTCGAGTTGGCGAATGTGAAGACTGCAATGGGGAGGAGAGAGGAGGCTCTAGGGAATCTTAGGAAGTGTTTGGAGATTAAGGAGTTCATGTTGGAGAAAGATAGTACTGAACTTGGCAAGGGACACCGGGATTTGGCAGAGGCGTATGTAGCTCTTTTGAACTTTAAGGATGCATTAGGATTCTGTATGAAGGCATTGGAGATTCACAAAGAAAAGTTGGGGCAGAATTCAGTTGAGGTTGCACATGACAGGAGACTTCTTGCGGTTATTTATACTGGGCTGGAGGAGCATGAGAAGGCGTTGGAGCAAAATGCATTGTCACAAAGGGTGTTGAAGAATTGGGGTCTTAGTTCCGACTTGCTTCGTGCAGAGATTGATGCTGCTAATATGCAGATTGCCCTGGGAAACTTTGACGAGGCTATTGAAACTTTGAAGCGTGTTGTTCAGCAGACAGATAAGGATAGTGAGACTAGGGCACTGGTGTTTATCTCGATGGGAAAAGCATTATGTAATCAGGAAAGAACGGCAGATGCAAAGAGATGTTTGGAGCTTGCTTGTGGAATTCTTGACAAGAGAGAGACAATCTCCCCAGTAGATGTTTCCGAAGCGTACTCGGAGATAGCAATGCAATATGAGACTATGAATGAGTTTGAAACTGCAATTTCACTGTTAAAGCGAACACTAGCTTTGCTTGAGAAGCTCCCACAAGAACAGCACTCTGAGGGAAGTGTTTCAGCTAGAATAGGGTGGTTACTTCTGTTGACTGGAAAGGTCTCACAGGCTGTTCCTTACTTGGAGAGTGCAGCTGAGAGGTTGAAAGAGAGCTTTGGTCCCAAGCATTTTGGCGTCGGCTATATTTACAATAACTTGGGGGCAGCATATTTAGAACTAGAGAGACCTCAGTCAGCTGCGCAGATGTTTGCTGTTGCGAAGGACATCATGGATGTCTCCCTTGGTCCCCATCATGCCGATTCAATTGAGTCATGCCAGAACCTCTCAAAAGCATACGCTGCCATGGGAAGCTATGTCCTTGCAATCCAATTCCAGCAGCAAGTAGTTGATGCTTGGGAAAGCCACGGACCAAGTGCTGAAGACGAACTCAAAGAAGCACACCGAGTTCTCGAACAATTGAAATTTAAAGCCCGTAACACATTTGCAAGTAATGAGTTTACTACAAAGGCCTTACCTCTGCCCCAGACCCAAACGTATGGATCTGACAGGAGTTCAAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0008150 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0042995 GO:0043226 GO:0044085 GO:0044464 GO:0044782 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0060271 GO:0060828 GO:0065007 GO:0070925 GO:0071840 GO:0090090 GO:0090175 GO:0120025 GO:0120031 GO:0120036 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_8

Protein Analysis

633

Amino Acids

70.33

Weight (kDa)

5.97

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_NPHP3	PF24885	230 - 322	4.2e-10	Nephrocystin-3 TPR domain
TPR_12	PF13424	265 - 324	2.1e-06	Tetratricopeptide repeat
TPR_12	PF13424	421 - 494	1.8e-06	Tetratricopeptide repeat
TPR_12	PF13424	473 - 534	9.4e-09	Tetratricopeptide repeat
TPR_12	PF13424	507 - 578	2.5e-08	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31240
fragaria_vesca	FvH4_2g21700 FvH4_2g21700 FvH4_2g21700
malus_domestica	MD05G1199500.v1.1
prunus_persica	Prupe.8G225300_v2.0.a1
pyrus_communis	pycom05g18590 pycom10g16070
rosa_chinensis	RchiOBHm_Chr6g0288381
rosa_laevigata	RLG00000012409
rosa_multiflora	Rmu_sc0001038.1_g000010
rosa_roxburghii	Rroxscaffold_7G00180110
rosa_rugosa	Rorug06G0196100
rosa_samantha	Rh6AG307000 Rh6BG313000 Rh6CG320800 Rh6DG306200
rosa_wichuraiana	Rw6G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1575
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	573
AciI	CCGC	5 cut(s)	97, 122, 128, 332, 926
AclWI	GGATC	2 cut(s)	642, 1882
AcsI	RAATTY	4 cut(s)	246, 889, 1224, 1796
AcuI	CTGAAG	1 cut(s)	1773
AcyI	GRCGYC	1 cut(s)	1509
AdeI	CACNNNGTG	1 cut(s)	658
AfaI	GTAC	3 cut(s)	575, 769, 1274
AfiI	CCNNNNNNNGG	4 cut(s)	292, 433, 583, 796
AgeI	ACCGGT	2 cut(s)	485, 643
AjnI	CCWGG	2 cut(s)	254, 1062
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	642, 1882
AlwNI	CAGNNNCTG	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	4 cut(s)	138, 342, 397, 1842
ApeKI	GCWGC	9 cut(s)	186, 383, 661, 1043, 1466, 1538, 1571, 1673, 1711
ApoI	RAATTY	4 cut(s)	246, 889, 1224, 1796
AsiGI	ACCGGT	2 cut(s)	485, 643
Asp700I	GAANNNNTTC	2 cut(s)	10, 1393
Asp718I	GGTACC	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	158, 1576
AspS9I	GGNCC	6 cut(s)	139, 283, 424, 1493, 1619, 1742
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	2 cut(s)	126, 431
AsuII	TTCGAA	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	5 cut(s)	283, 424, 1493, 1619, 1742
BaeGI	GKGCMC	1 cut(s)	1141
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	2 cut(s)	689, 1761
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	9 cut(s)	198, 370, 673, 1030, 1478, 1550, 1558, 1660, 1723
BccI	CCATC	5 cut(s)	109, 214, 323, 1150, 1632
BceAI	ACGGC	1 cut(s)	1203
BciT130I	CCWGG	2 cut(s)	256, 1064
BcnI	CCSGG	1 cut(s)	791
BfaI	CTAG	5 cut(s)	713, 1134, 1346, 1401, 1553
BmcAI	AGTACT	1 cut(s)	769
Bme1390I	CCNGG	3 cut(s)	256, 791, 1064
Bme18I	GGWCC	5 cut(s)	283, 424, 1493, 1619, 1742
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	6 cut(s)	139, 283, 424, 1493, 1619, 1742
BmiI	GGNNCC	4 cut(s)	426, 575, 1495, 1621
BmrFI	CCNGG	3 cut(s)	256, 791, 1064
BmrI	ACTGGG	2 cut(s)	948, 1247
BmsI	GCATC	4 cut(s)	823, 1030, 1183, 1714
BmuI	ACTGGG	2 cut(s)	948, 1247
BoxI	GACNNNNGTC	1 cut(s)	1564
BpiI	GAAGAC	2 cut(s)	689, 1761
BplI	GAGNNNNNCTC	2 cut(s)	1232, 1264
BpmI	CTGGAG	2 cut(s)	238, 965
Bpu14I	TTCGAA	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	386, 1376
BpuMI	CCSGG	1 cut(s)	791
BsaHI	GRCGYC	1 cut(s)	1509
BsaI	GGTCTC	3 cut(s)	136, 1441, 1552
BsaJI	CCNNGG	8 cut(s)	270, 345, 510, 1062, 1063, 1615, 1677, 1738
BsaWI	WCCGGW	2 cut(s)	485, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 433, 583, 796
Bse118I	RCCGGY	4 cut(s)	124, 136, 485, 643
Bse1I	ACTGG	4 cut(s)	943, 1146, 1253, 1432
Bse3DI	GCAATG	2 cut(s)	696, 1293
BseBI	CCWGG	2 cut(s)	256, 1064
BseDI	CCNNGG	8 cut(s)	270, 345, 510, 1062, 1063, 1615, 1677, 1738
BseGI	GGATG	3 cut(s)	101, 838, 1612
BseLI	CCNNNNNNNGG	4 cut(s)	292, 433, 583, 796
BseMI	GCAATG	2 cut(s)	696, 1293
BseMII	CTCAG	3 cut(s)	1374, 1461, 1577
BseNI	ACTGG	4 cut(s)	943, 1146, 1253, 1432
BseRI	GAGGAG	8 cut(s)	57, 97, 100, 626, 629, 712, 719, 962
BseSI	GKGCMC	1 cut(s)	1141
BseXI	GCAGC	9 cut(s)	198, 370, 673, 1030, 1478, 1550, 1558, 1660, 1723
BsgI	GTGCAG	3 cut(s)	680, 1050, 1485
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	4 cut(s)	140, 344, 399, 1844
BshNI	GGYRCC	1 cut(s)	573
BshTI	ACCGGT	2 cut(s)	485, 643
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	5 cut(s)	125, 137, 486, 644, 790
BslFI	GGGAC	3 cut(s)	798, 1479, 1605
BslI	CCNNNNNNNGG	4 cut(s)	292, 433, 583, 796
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	3 cut(s)	798, 1479, 1605
BsnI	GGCC	4 cut(s)	140, 344, 399, 1844
Bso31I	GGTCTC	3 cut(s)	136, 1441, 1552
BsoBI	CYCGRG	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	375, 1141
Bsp143I	GATC	2 cut(s)	634, 1874
Bsp19I	CCATGG	4 cut(s)	270, 345, 510, 1677
BspACI	CCGC	5 cut(s)	97, 122, 128, 332, 926
BspANI	GGCC	4 cut(s)	140, 344, 399, 1844
BspCNI	CTCAG	3 cut(s)	1375, 1462, 1576
BspLI	GGNNCC	4 cut(s)	426, 575, 1495, 1621
BspPI	GGATC	2 cut(s)	642, 1882
BspT104I	TTCGAA	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	573
BspTNI	GGTCTC	3 cut(s)	136, 1441, 1552
BsrDI	GCAATG	2 cut(s)	696, 1293
BsrFI	RCCGGY	4 cut(s)	124, 136, 485, 643
BsrI	ACTGG	4 cut(s)	943, 1146, 1253, 1432
BssAI	RCCGGY	4 cut(s)	124, 136, 485, 643
BssECI	CCNNGG	8 cut(s)	270, 345, 510, 1062, 1063, 1615, 1677, 1738
BssMI	GATC	2 cut(s)	634, 1874
BssNI	GRCGYC	1 cut(s)	1509
BssT1I	CCWWGG	5 cut(s)	270, 345, 510, 1615, 1677
Bst2UI	CCWGG	2 cut(s)	256, 1064
Bst4CI	ACNGT	2 cut(s)	522, 1332
Bst6I	CTCTTC	4 cut(s)	29, 75, 285, 357
BstACI	GRCGYC	1 cut(s)	1509
BstAPI	GCANNNNNTGC	1 cut(s)	1673
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	126, 330, 1215
BstDEI	CTNAG	6 cut(s)	638, 722, 1010, 1383, 1470, 1563
BstDSI	CCRYGG	5 cut(s)	270, 345, 510, 1677, 1738
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	101, 838, 1612
BstHHI	GCGC	2 cut(s)	158, 1576
BstKTI	GATC	2 cut(s)	637, 1877
BstMBI	GATC	2 cut(s)	634, 1874
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	8 cut(s)	341, 455, 464, 593, 812, 949, 1360, 1673
BstNI	CCWGG	2 cut(s)	256, 1064
BstPAI	GACNNNNGTC	1 cut(s)	1564
BstSCI	CCNGG	3 cut(s)	254, 789, 1062
BstSLI	GKGCMC	1 cut(s)	1141
BstV1I	GCAGC	9 cut(s)	198, 370, 673, 1030, 1478, 1550, 1558, 1660, 1723
BstV2I	GAAGAC	2 cut(s)	689, 1761
BstX2I	RGATCY	2 cut(s)	634, 1874
BstXI	CCANNNNNNTGG	1 cut(s)	1871
BstYI	RGATCY	2 cut(s)	634, 1874
BsuRI	GGCC	4 cut(s)	140, 344, 399, 1844
BtgI	CCRYGG	5 cut(s)	270, 345, 510, 1677, 1738
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	101, 838, 1612
BtsIMutI	CAGTG	2 cut(s)	1139, 1328
Cac8I	GCNNGC	3 cut(s)	126, 330, 1215
CaiI	CAGNNNCTG	1 cut(s)	153
CfoI	GCGC	2 cut(s)	158, 1576
Cfr10I	RCCGGY	4 cut(s)	124, 136, 485, 643
Cfr13I	GGNCC	6 cut(s)	139, 283, 424, 1493, 1619, 1742
CseI	GACGC	1 cut(s)	1498
Csp6I	GTAC	3 cut(s)	574, 768, 1273
CspAI	ACCGGT	2 cut(s)	485, 643
CviQI	GTAC	3 cut(s)	574, 768, 1273
DdeI	CTNAG	6 cut(s)	638, 722, 1010, 1383, 1470, 1563
DpnI	GATC	2 cut(s)	636, 1876
DpnII	GATC	2 cut(s)	634, 1874
DraI	TTTAAA	1 cut(s)	1801
DraIII	CACNNNGTG	1 cut(s)	658
Eam1104I	CTCTTC	4 cut(s)	29, 75, 285, 357
EarI	CTCTTC	4 cut(s)	29, 75, 285, 357
EciI	GGCGGA	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	5 cut(s)	270, 345, 510, 1615, 1677
Eco147I	AGGCCT	1 cut(s)	1844
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	3 cut(s)	136, 1441, 1552
Eco47I	GGWCC	5 cut(s)	283, 424, 1493, 1619, 1742
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	1773
Eco88I	CYCGRG	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRI	GAATTC	2 cut(s)	889, 1224
EcoRII	CCWGG	2 cut(s)	254, 1062
EcoT14I	CCWWGG	5 cut(s)	270, 345, 510, 1615, 1677
EcoT22I	ATGCAT	2 cut(s)	838, 979
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	5 cut(s)	270, 345, 510, 1615, 1677
Esp3I	CGTCTC	1 cut(s)	471
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	3 cut(s)	798, 1479, 1605
FokI	GGATG	3 cut(s)	88, 845, 1619
FriOI	GRGCYC	1 cut(s)	375
FspBI	CTAG	5 cut(s)	713, 1134, 1346, 1401, 1553
FspI	TGCGCA	1 cut(s)	1575
GlaI	GCGC	2 cut(s)	157, 1575
GsuI	CTGGAG	2 cut(s)	238, 965
HaeIII	GGCC	4 cut(s)	140, 344, 399, 1844
HapII	CCGG	5 cut(s)	125, 137, 486, 644, 790
HgaI	GACGC	1 cut(s)	1498
HhaI	GCGC	2 cut(s)	158, 1576
Hin1I	GRCGYC	1 cut(s)	1509
Hin6I	GCGC	2 cut(s)	156, 1574
HinP1I	GCGC	2 cut(s)	156, 1574
HincII	GTYRAC	1 cut(s)	1425
HindII	GTYRAC	1 cut(s)	1425
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	9 cut(s)	48, 170, 302, 350, 718, 843, 865, 1634, 1643
HpaII	CCGG	5 cut(s)	125, 137, 486, 644, 790
HphI	GGTGA	2 cut(s)	126, 431
Hpy166II	GTNNAC	2 cut(s)	1425, 1833
Hpy188I	TCNGA	8 cut(s)	94, 283, 390, 1018, 1267, 1279, 1384, 1879
Hpy188III	TCNNGA	8 cut(s)	78, 167, 210, 632, 1153, 1178, 1229, 1784
Hpy8I	GTNNAC	2 cut(s)	1425, 1833
Hpy99I	CGWCG	2 cut(s)	233, 1514
HpyAV	CCTTC	5 cut(s)	410, 457, 847, 952, 1588
HpyCH4III	ACNGT	2 cut(s)	522, 1332
HpyCH4IV	ACGT	1 cut(s)	1868
HpyF10VI	GCNNNNNNNGC	8 cut(s)	341, 455, 464, 593, 812, 949, 1360, 1673
HpyF3I	CTNAG	6 cut(s)	638, 722, 1010, 1383, 1470, 1563
HpySE526I	ACGT	1 cut(s)	1868
Hsp92I	GRCGYC	1 cut(s)	1509
HspAI	GCGC	2 cut(s)	156, 1574
KpnI	GGTACC	1 cut(s)	577
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	634, 1874
LmnI	GCTCC	5 cut(s)	370, 949, 967, 1210, 1368
Lsp1109I	GCAGC	9 cut(s)	198, 370, 673, 1030, 1478, 1550, 1558, 1660, 1723
LweI	GCATC	4 cut(s)	823, 1030, 1183, 1714
MaeI	CTAG	5 cut(s)	713, 1134, 1346, 1401, 1553
MaeII	ACGT	1 cut(s)	1868
MaeIII	GTNAC	3 cut(s)	981, 1413, 1808
MalI	GATC	2 cut(s)	636, 1876
MboI	GATC	2 cut(s)	634, 1874
MfeI	CAATTG	2 cut(s)	1638, 1790
MflI	RGATCY	2 cut(s)	634, 1874
MhlI	GDGCHC	2 cut(s)	375, 1141
MlyI	GAGTC	5 cut(s)	42, 164, 311, 359, 1652
MmeI	TCCRAC	5 cut(s)	117, 261, 735, 945, 1041
Mph1103I	ATGCAT	2 cut(s)	838, 979
MreI	CGCCGGCG	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	10, 1393
MseI	TTAA	8 cut(s)	524, 537, 548, 579, 741, 828, 1334, 1800
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	2 cut(s)	1469, 1571
MspI	CCGG	5 cut(s)	125, 137, 486, 644, 790
MspR9I	CCNGG	3 cut(s)	256, 791, 1064
MunI	CAATTG	2 cut(s)	1638, 1790
MvaI	CCWGG	2 cut(s)	256, 1064
MwoI	GCNNNNNNNGC	8 cut(s)	341, 455, 464, 593, 812, 949, 1360, 1673
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	791
NcoI	CCATGG	4 cut(s)	270, 345, 510, 1677
NdeII	GATC	2 cut(s)	634, 1874
NgoMIV	GCCGGC	1 cut(s)	124
NlaIV	GGNNCC	4 cut(s)	426, 575, 1495, 1621
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	981
NsbI	TGCGCA	1 cut(s)	1575
NsiI	ATGCAT	2 cut(s)	838, 979
NspV	TTCGAA	1 cut(s)	360
PaeR7I	CTCGAG	1 cut(s)	665
PasI	CCCWGGG	1 cut(s)	1063
PceI	AGGCCT	1 cut(s)	1844
PdiI	GCCGGC	1 cut(s)	126
PdmI	GAANNNNTTC	2 cut(s)	10, 1393
PfeI	GAWTC	4 cut(s)	718, 843, 865, 1634
PinAI	ACCGGT	2 cut(s)	485, 643
PleI	GAGTC	5 cut(s)	42, 164, 310, 358, 1651
PpsI	GAGTC	5 cut(s)	42, 164, 310, 358, 1651
PpuMI	RGGWCCY	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	1564
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	254, 1062
PspGI	CCWGG	2 cut(s)	254, 1062
PspN4I	GGNNCC	4 cut(s)	426, 575, 1495, 1621
PspPI	GGNCC	6 cut(s)	139, 283, 424, 1493, 1619, 1742
PspPPI	RGGWCCY	1 cut(s)	424
PspXI	VCTCGAGB	1 cut(s)	665
PstNI	CAGNNNCTG	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	634, 1874
PvuII	CAGCTG	2 cut(s)	1469, 1571
RsaI	GTAC	3 cut(s)	575, 769, 1274
RsaNI	GTAC	3 cut(s)	574, 768, 1273
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	8 cut(s)	524, 537, 548, 579, 741, 828, 1334, 1800
Sau3AI	GATC	2 cut(s)	634, 1874
Sau96I	GGNCC	6 cut(s)	139, 283, 424, 1493, 1619, 1742
ScaI	AGTACT	1 cut(s)	769
SchI	GAGTC	5 cut(s)	42, 164, 311, 359, 1652
ScrFI	CCNGG	3 cut(s)	256, 791, 1064
SduI	GDGCHC	2 cut(s)	375, 1141
SfaNI	GCATC	4 cut(s)	823, 1030, 1183, 1714
Sfr274I	CTCGAG	1 cut(s)	665
SfuI	TTCGAA	1 cut(s)	360
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	5 cut(s)	283, 424, 1493, 1619, 1742
SlaI	CTCGAG	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	3 cut(s)	401, 665, 1355
SmoI	CTYRAG	3 cut(s)	401, 665, 1355
SseBI	AGGCCT	1 cut(s)	1844
SsiI	CCGC	5 cut(s)	97, 122, 128, 332, 926
SspMI	CTAG	5 cut(s)	713, 1134, 1346, 1401, 1553
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	1844
StyD4I	CCNGG	3 cut(s)	254, 789, 1062
StyI	CCWWGG	5 cut(s)	270, 345, 510, 1615, 1677
TaaI	ACNGT	2 cut(s)	522, 1332
TaiI	ACGT	1 cut(s)	1871
TaqI	TCGA	8 cut(s)	211, 231, 300, 318, 360, 666, 1154, 1785
TatI	WGTACW	1 cut(s)	767
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	4 cut(s)	718, 843, 865, 1634
Tru1I	TTAA	8 cut(s)	524, 537, 548, 579, 741, 828, 1334, 1800
Tru9I	TTAA	8 cut(s)	524, 537, 548, 579, 741, 828, 1334, 1800
TscAI	CASTG	2 cut(s)	1146, 1335
TseFI	GTSAC	1 cut(s)	981
TseI	GCWGC	9 cut(s)	186, 383, 661, 1043, 1466, 1538, 1571, 1673, 1711
Tsp45I	GTSAC	1 cut(s)	981
TspDTI	ATGAA	5 cut(s)	233, 429, 739, 866, 1319
TspGWI	ACGGA	1 cut(s)	1755
TspRI	CASTG	2 cut(s)	1146, 1335
VpaK11BI	GGWCC	5 cut(s)	283, 424, 1493, 1619, 1742
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	4 cut(s)	246, 889, 1224, 1796
XhoI	CTCGAG	1 cut(s)	665
XmnI	GAANNNNTTC	2 cut(s)	10, 1393
XspI	CTAG	5 cut(s)	713, 1134, 1346, 1401, 1553
ZrmI	AGTACT	1 cut(s)	769
Zsp2I	ATGCAT	2 cut(s)	838, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.