Rorug06G0196100

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013105
Physical Location & Seq
Reverse (-)
31662124 .. 31664986
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0196100.1

Sequence Viewer

Length: 1065 bp
ATGGCTAGTTTTGCTTCTCTTTGCTCTCTGTTTCTGATCGTGTCTTCTGTTTTAGTTTCTTCCTACTTTGGTGTCTCGGAGGCACAACCCTCAGTTCCTGTAGTTAAGGGGCTCTCTTGGTCCTTCTATGATTCTAGCTGTCCTAAGCTAGAATCCATTGTAAGAAAGCAGCTCAAGAAGGTCTTCAAGGAAGACATTGGCCAGGCTGCTGGCTTGCTTCGTCTCCATTTCCATGACTGCTTTGTTCAGGGATGTGATGGGTCAGTTTTGCTTGATGGATCAGCGAGTGGTCCAAGTGAGCAGGAGGCTCCTCCAAACCTGAGTTTGAGGGCCACGGCCTTCGAAATCATCAATGACCTCCGTGAGCTAGTTCATAGCAAATGTGGGAGGGTTGTTTCTTGTGCTGATATAGCTGCTCTTGCTGCTAGGGATTCTGTTTTCCTGTCAGGTGGCCCTGACTATGAAGTACCACTGGGAAGAAAGGATGGACTAAACTTTGCAACAAGGAATGAAACCCTAGCTAACCTCCCTGCACCAACAAGCAACACTACTACTCTTCTCACAGAACTTGCCAAGAAAAACTTGGATGCCACTGATGTGGTAGCCCTCTCAGGTGGCCACACCATTGGACTTGGCCATTGTACATCCTTCACTGAACGGCTCTATCCAACCCAAGACACTAGCATGGACAAAACTTTTGCCAATGACCTTAAGGAAGTTTGTCCTGCATTGGACACGAATGCCACAACTGTGCTTGATATCCGCTCACCTGATACATTCGACAACAAGTATTACGTTGATCTCATGAACCGCCAAGGTCTATTCACATCGGACCAAGATTTATACACAGATAAAAGGACACGCGACATTGTCACCAGCTTTGCTGTCAATCAGACATTGTTCTTCGAGCAATTTGTTCATTCCATGATCAAGATGGGGCAATTGAGCGTACTAACTGGTTCCAAAGGTGAAATTCGCGCTAATTGCTCAGTGAGGAACTCAGACAACGCAGATTACTTGAGCTCCGTGGTGGAAGAGGATGAGGAGAGTTTGTCTGAGTTTTAA

Protein Analysis

354

Amino Acids

38.57

Weight (kDa)

4.83

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 54 - 296 1.7e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31240
fragaria_vesca FvH4_2g21700 FvH4_2g21700 FvH4_2g21700
malus_domestica MD05G1199500.v1.1
prunus_persica Prupe.8G225300_v2.0.a1
pyrus_communis pycom05g18590 pycom10g16070
rosa_chinensis RchiOBHm_Chr6g0288381
rosa_laevigata RLG00000012409
rosa_multiflora Rmu_sc0001038.1_g000010
rosa_roxburghii Rroxscaffold_7G00180110
rosa_rugosa Rorug06G0196100
rosa_samantha Rh6AG307000 Rh6BG313000 Rh6CG320800 Rh6DG306200
rosa_wichuraiana Rw6G026560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 765
AccII CGCG 2 cut(s) 864, 978
AciI CCGC 2 cut(s) 763, 811
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 3 cut(s) 199, 616, 634
AcsI RAATTY 1 cut(s) 972
AfaI GTAC 3 cut(s) 468, 643, 951
AflII CTTAAG 1 cut(s) 710
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 201
AleI CACNNNNGTG 2 cut(s) 596, 749
AluBI AGCT 8 cut(s) 138, 148, 172, 367, 413, 521, 879, 1023
AluI AGCT 8 cut(s) 138, 148, 172, 367, 413, 521, 879, 1023
Alw21I GWGCWC 1 cut(s) 1025
Alw26I GTCTC 2 cut(s) 79, 227
AlwI GGATC 1 cut(s) 286
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 6 cut(s) 199, 330, 336, 451, 616, 634
ApeKI GCWGC 4 cut(s) 169, 206, 413, 422
ApoI RAATTY 1 cut(s) 972
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 980
AspS9I GGNCC 5 cut(s) 120, 290, 330, 452, 832
AsuHPI GGTGA 3 cut(s) 759, 865, 980
AsuII TTCGAA 1 cut(s) 342
AvaII GGWCC 3 cut(s) 120, 290, 832
BalI TGGCCA 3 cut(s) 201, 618, 636
BanII GRGCYC 2 cut(s) 114, 1025
BbsI GAAGAC 3 cut(s) 36, 175, 198
Bbv12I GWGCWC 1 cut(s) 1025
BbvI GCAGC 4 cut(s) 181, 193, 400, 409
BccI CCATC 4 cut(s) 251, 269, 479, 928
BceAI ACGGC 2 cut(s) 351, 674
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 927
BcoDI GTCTC 2 cut(s) 79, 227
BfaI CTAG 7 cut(s) 6, 135, 149, 368, 426, 518, 681
BfmI CTRYAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 710
BisI GCNGC 4 cut(s) 170, 207, 414, 423
BlsI GCNGC 4 cut(s) 171, 208, 415, 424
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 3 cut(s) 120, 290, 832
BmgT120I GGNCC 5 cut(s) 120, 290, 330, 452, 832
BmiI GGNNCC 2 cut(s) 309, 961
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 3 cut(s) 36, 175, 198
Bpu10I CCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 158, 1039
BsaJI CCNNGG 3 cut(s) 333, 814, 1026
BsaXI ACNNNNNCTCC 3 cut(s) 1007, 1037, 1037
Bse1I ACTGG 2 cut(s) 477, 961
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 333, 814, 1026
BseGI GGATG 5 cut(s) 257, 490, 592, 644, 1045
BseMII CTCAG 6 cut(s) 105, 311, 624, 1002, 1014, 1047
BseNI ACTGG 2 cut(s) 477, 961
BseRI GAGGAG 2 cut(s) 300, 1058
BseXI GCAGC 4 cut(s) 181, 193, 400, 409
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 2 cut(s) 864, 978
BshFI GGCC 6 cut(s) 201, 332, 338, 453, 618, 636
BsiHKAI GWGCWC 1 cut(s) 1025
BsmAI GTCTC 2 cut(s) 79, 227
BsmBI CGTCTC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 6 cut(s) 201, 332, 338, 453, 618, 636
Bsp119I TTCGAA 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 114, 1025
Bsp1407I TGTACA 1 cut(s) 641
Bsp143I GATC 4 cut(s) 36, 278, 799, 927
BspACI CCGC 2 cut(s) 763, 811
BspANI GGCC 6 cut(s) 201, 332, 338, 453, 618, 636
BspCNI CTCAG 6 cut(s) 104, 312, 623, 1001, 1013, 1048
BspFNI CGCG 2 cut(s) 864, 978
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 309, 961
BspPI GGATC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 641
BsrI ACTGG 2 cut(s) 477, 961
BssECI CCNNGG 3 cut(s) 333, 814, 1026
BssMI GATC 4 cut(s) 36, 278, 799, 927
BssT1I CCWWGG 1 cut(s) 814
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 2 cut(s) 561, 1029
BstAFI CTTAAG 1 cut(s) 710
BstAUI TGTACA 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 211, 215
BstDEI CTNAG 7 cut(s) 91, 144, 320, 610, 988, 1000, 1056
BstDSI CCRYGG 2 cut(s) 333, 1026
BstF5I GGATG 5 cut(s) 257, 490, 592, 644, 1045
BstFNI CGCG 2 cut(s) 864, 978
BstHHI GCGC 1 cut(s) 980
BstKTI GATC 4 cut(s) 39, 281, 802, 930
BstMAI GTCTC 2 cut(s) 79, 227
BstMBI GATC 4 cut(s) 36, 278, 799, 927
BstMWI GCNNNNNNNGC 5 cut(s) 11, 410, 419, 422, 984
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 2 cut(s) 864, 978
BstV1I GCAGC 4 cut(s) 181, 193, 400, 409
BstV2I GAAGAC 3 cut(s) 36, 175, 198
BstXI CCANNNNNNTGG 3 cut(s) 209, 598, 626
BsuRI GGCC 6 cut(s) 201, 332, 338, 453, 618, 636
BtgI CCRYGG 2 cut(s) 333, 1026
BtsCI GGATG 5 cut(s) 257, 490, 592, 644, 1045
BtsIMutI CAGTG 4 cut(s) 470, 591, 651, 996
Cac8I GCNNGC 2 cut(s) 211, 215
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 804
CfoI GCGC 1 cut(s) 980
Cfr13I GGNCC 5 cut(s) 120, 290, 330, 452, 832
Csp6I GTAC 3 cut(s) 467, 642, 950
CviAII CATG 4 cut(s) 233, 685, 805, 925
CviQI GTAC 3 cut(s) 467, 642, 950
DdeI CTNAG 7 cut(s) 91, 144, 320, 610, 988, 1000, 1056
DpnI GATC 4 cut(s) 38, 280, 801, 929
DpnII GATC 4 cut(s) 36, 278, 799, 927
EaeI YGGCCR 3 cut(s) 199, 616, 634
Eam1104I CTCTTC 2 cut(s) 561, 1029
EarI CTCTTC 2 cut(s) 561, 1029
Ecl136II GAGCTC 1 cut(s) 1023
Eco130I CCWWGG 1 cut(s) 814
Eco24I GRGCYC 2 cut(s) 114, 1025
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 3 cut(s) 120, 290, 832
Eco53kI GAGCTC 1 cut(s) 1023
EcoICRI GAGCTC 1 cut(s) 1023
EcoRII CCWGG 1 cut(s) 201
EcoRV GATATC 1 cut(s) 760
EcoT14I CCWWGG 1 cut(s) 814
EcoT38I GRGCYC 2 cut(s) 114, 1025
ErhI CCWWGG 1 cut(s) 814
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 4 cut(s) 236, 688, 808, 928
FaiI YATR 9 cut(s) 129, 234, 375, 410, 462, 686, 806, 844, 926
FalI AAGNNNNNCTT 4 cut(s) 167, 199, 566, 598
FatI CATG 4 cut(s) 232, 684, 804, 924
FbaI TGATCA 1 cut(s) 927
Fnu4HI GCNGC 4 cut(s) 170, 207, 414, 423
FokI GGATG 5 cut(s) 264, 497, 599, 631, 1052
FriOI GRGCYC 2 cut(s) 114, 1025
Fsp4HI GCNGC 4 cut(s) 170, 207, 414, 423
FspBI CTAG 7 cut(s) 6, 135, 149, 368, 426, 518, 681
GlaI GCGC 1 cut(s) 979
GluI GCNGC 4 cut(s) 170, 207, 414, 423
HaeIII GGCC 6 cut(s) 201, 332, 338, 453, 618, 636
HhaI GCGC 1 cut(s) 980
Hin1II CATG 4 cut(s) 236, 688, 808, 928
Hin6I GCGC 1 cut(s) 978
HinP1I GCGC 1 cut(s) 978
HinfI GANTC 3 cut(s) 131, 152, 431
HphI GGTGA 3 cut(s) 759, 865, 980
Hpy188I TCNGA 6 cut(s) 36, 79, 832, 894, 1003, 1057
Hpy188III TCNNGA 3 cut(s) 175, 805, 931
HpyAV CCTTC 4 cut(s) 133, 172, 349, 658
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 3 cut(s) 500, 533, 728
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 410, 419, 422, 984
HpyF3I CTNAG 7 cut(s) 91, 144, 320, 610, 988, 1000, 1056
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 4 cut(s) 236, 688, 808, 928
HspAI GCGC 1 cut(s) 978
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 4 cut(s) 36, 278, 799, 927
LmnI GCTCC 2 cut(s) 313, 1028
Lsp1109I GCAGC 4 cut(s) 181, 193, 400, 409
LweI GCATC 1 cut(s) 577
MaeI CTAG 7 cut(s) 6, 135, 149, 368, 426, 518, 681
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 1 cut(s) 871
MalI GATC 4 cut(s) 38, 280, 801, 929
MbiI CCGCTC 1 cut(s) 765
MboI GATC 4 cut(s) 36, 278, 799, 927
MboII GAAGA 8 cut(s) 36, 51, 175, 203, 489, 548, 895, 1046
MfeI CAATTG 1 cut(s) 941
MhlI GDGCHC 2 cut(s) 114, 1025
MlsI TGGCCA 3 cut(s) 201, 618, 636
MluCI AATT 4 cut(s) 911, 941, 972, 982
MluNI TGGCCA 3 cut(s) 201, 618, 636
MmeI TCCRAC 1 cut(s) 692
Mox20I TGGCCA 3 cut(s) 201, 618, 636
MroXI GAANNNNTTC 1 cut(s) 182
MscI TGGCCA 3 cut(s) 201, 618, 636
MseI TTAA 3 cut(s) 105, 711, 1063
MslI CAYNNNNRTG 4 cut(s) 231, 596, 683, 749
Msp20I TGGCCA 3 cut(s) 201, 618, 636
MspCI CTTAAG 1 cut(s) 710
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 941
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 2 cut(s) 864, 978
MwoI GCNNNNNNNGC 5 cut(s) 11, 410, 419, 422, 984
NdeII GATC 4 cut(s) 36, 278, 799, 927
NlaIII CATG 4 cut(s) 236, 688, 808, 928
NlaIV GGNNCC 2 cut(s) 309, 961
NmuCI GTSAC 1 cut(s) 871
NspV TTCGAA 1 cut(s) 342
OliI CACNNNNGTG 2 cut(s) 596, 749
PagI TCATGA 1 cut(s) 804
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 131, 152, 431
PflFI GACNNNGTC 1 cut(s) 869
PkrI GCNGC 4 cut(s) 171, 208, 415, 424
Psp124BI GAGCTC 1 cut(s) 1025
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 309, 961
PspPI GGNCC 5 cut(s) 120, 290, 330, 452, 832
PstNI CAGNNNCTG 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 869
RsaI GTAC 3 cut(s) 468, 643, 951
RsaNI GTAC 3 cut(s) 467, 642, 950
RseI CAYNNNNRTG 4 cut(s) 231, 596, 683, 749
SacI GAGCTC 1 cut(s) 1025
SaqAI TTAA 3 cut(s) 105, 711, 1063
SatI GCNGC 4 cut(s) 170, 207, 414, 423
Sau3AI GATC 4 cut(s) 36, 278, 799, 927
Sau96I GGNCC 5 cut(s) 120, 290, 330, 452, 832
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 114, 1025
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 342
SinI GGWCC 3 cut(s) 120, 290, 832
SmiMI CAYNNNNRTG 4 cut(s) 231, 596, 683, 749
SmlI CTYRAG 3 cut(s) 173, 710, 1018
SmoI CTYRAG 3 cut(s) 173, 710, 1018
Sse9I AATT 4 cut(s) 911, 941, 972, 982
SsiI CCGC 2 cut(s) 763, 811
SspMI CTAG 7 cut(s) 6, 135, 149, 368, 426, 518, 681
SstI GAGCTC 1 cut(s) 1025
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 1 cut(s) 798
TaqI TCGA 3 cut(s) 342, 780, 906
TasI AATT 4 cut(s) 911, 941, 972, 982
TatI WGTACW 1 cut(s) 641
TfiI GAWTC 3 cut(s) 131, 152, 431
Tru1I TTAA 3 cut(s) 105, 711, 1063
Tru9I TTAA 3 cut(s) 105, 711, 1063
TscAI CASTG 4 cut(s) 477, 598, 658, 996
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 4 cut(s) 169, 206, 413, 422
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 5 cut(s) 362, 477, 525, 821, 908
TspGWI ACGGA 2 cut(s) 350, 1015
TspRI CASTG 4 cut(s) 477, 598, 658, 996
Tth111I GACNNNGTC 1 cut(s) 869
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 120, 290, 832
XapI RAATTY 1 cut(s) 972
XcmI CCANNNNNNNNNTGG 2 cut(s) 580, 931
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 7 cut(s) 6, 135, 149, 368, 426, 518, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.