Prupe.8G225300_v2.0.a1

Tetratricopeptide repeat

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
20263594 .. 20266328
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G225300.1

Sequence Viewer

Length: 1875 bp
ATGAGAAAATCTCCAATCTCACTGTTCTCTCATCTCACTCGTCAAAGACTTAAATCCTCTGCTCCTCTTCTTTCCAGAAATTACATTTCTGACCGCGCCTCCTCCTCATCTTCTTCGCCGCTGGTCTCACCGACCCGTTTCAGGCCCTACACCGAAACCCATGGCTTATTCTTCAAAAGCAGCCAATTCCAAGCAAATCCATCTCGAAATATGAACACCCTTGTTGAAAGATCACCTCAAGTGTCCTCAAGGGAGAGAAAGTCCATGGAAAAATCTGAGCTTGAAGAGGCTTTCGAGTCTGCAAAGACTTCTGAAGAAATGCTTAAGGCTTTCAAGAACATGGAGTCAGCTTTTGATGAGAGAGAGCTTGGTTTGGCTTCTTTGAAAGTTGGCCTCAAACTTGACCAAGAAGGTGAGGACCCTGAAAAGACTCTGTCTTTTGCTACCAGAGCCTGGAAAGCTTTGGATAGAGATGATAAGCCTTCTTTGCCTGTTGCCATGGCTTTACAATTATTGGGTTCTGTCAATTATAGCTTAAAAAGGTTTAGTGGTAGTTTGGGGTTCCTTAATATGGCTAATAGAGCATTGGGTAGATTAGAGGAGGAGGGTTTTGATGTTCGGGATATTAGGCCTGTGCTTCATGCTGTACAGCTCGAGCTGGCAAATGTAAAGACGGCAATGGGGAGGAGAGAGGAGGCTCTTGGGAATCTTAGGAAGTGTTTGGAAATTAAGGAGTTGATGTTGGAGAAAGATAGTACAGAACTTGGCAAGGCAAACCGGGATTTGGCGGAGGCATATGTCGCTCTTTTGAACTTTAAGGAGGCATTAGGCTTCTGTATGAAGGCATTGGACATTCACAGACAGCAGTTGGGGCAGAATTCGGTGGAGGTTGCACATGACAGGAGGCTTCTTGCTGTTATTTATACTGGGTTGGAGGAGCATGAGAAGGCCTTGGAGCAAAATGAGTTGTCACAAAGGGTTTTGAAGAATTGGGGTCTTAGCTCTGATTTGCTTCGTGCAGAGATTGATGCTGCTAATATGCAGATTGCATTGGGAAAGTTTGATGAGGCTATTGATACTTTGAAGCGTGTTGTTCAGCAAACAGACAAGGAGAGTGAGACTAGGGCACTGGTATTTATCTCGATGGGAAAAGCCTTATGTAATCAGGAAAAAATTGCCGATGCAAAGAGATGTTTGGAGATTTCTTGTGGAATTCTTGACAAGAAAGAGACAGTCTCCCCGGTAGATGTTGCTGAGGCATACTCAGAGATATCAATGCAATACGAATCTATGAATGAGTTTGAGACTGCAATTTCACTGTTAAAGAGAACATTGACTTTGCTTGAGAAGCTCCCACAAGAACAGCACTCCGAGGGGAGTGTTTCGGCTAGAATAGGGTGGTTGCTTCTGTTGACTGGAAAGGTCTCACAGGCTGTGCCTTACTTGGAGAGTGCGGCTGAGAGGTTGAAAGAGAGCTTTGGTCCCAAGCATTTTGGTGTGGGCTATATATACAATAACTTGGGGGCAGCATATTTGGAACTAGACAGACCTCAGTCAGCTGCTCAGATGTTTGCTGTTGCGAAGGATATCATGGATTTTTCGCTTGGCCCCCATCATGCAGATTCAATTGAGTCATGCCAGAACCTTTCAAAAGCATATGATGCCATGAAAAGCTATGCCCTTGCAATCCAATTCCAGCAGCAAGTAGTTGATGCTTGGGAAAGCCATGGACCAAGTGCTCATGACGAACTCAAAGAAGCACACCGAGTTCTCGAACAATTGAAGAAAAAAGCCCGTGGCACATTTGCAAATGATGAGCATACTACAAAGGCCTTGCCCTTACCCCAAACTCATCCATCTGCCAGGAGTTCATAA

Protein Analysis

625

Amino Acids

69.83

Weight (kDa)

6.27

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31240
fragaria_vesca FvH4_2g21700 FvH4_2g21700 FvH4_2g21700
malus_domestica MD05G1199500.v1.1
prunus_persica Prupe.8G225300_v2.0.a1
pyrus_communis pycom05g18590 pycom10g16070
rosa_chinensis RchiOBHm_Chr6g0288381
rosa_laevigata RLG00000012409
rosa_multiflora Rmu_sc0001038.1_g000010
rosa_roxburghii Rroxscaffold_7G00180110
rosa_rugosa Rorug06G0196100
rosa_samantha Rh6AG307000 Rh6BG313000 Rh6CG320800 Rh6DG306200
rosa_wichuraiana Rw6G026560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 453
AccII CGCG 1 cut(s) 96
AciI CCGC 4 cut(s) 94, 119, 788, 1454
AcsI RAATTY 2 cut(s) 877, 1212
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 2 cut(s) 648, 757
AfiI CCNNNNNNNGG 4 cut(s) 141, 453, 571, 784
AflII CTTAAG 1 cut(s) 323
AjnI CCWGG 2 cut(s) 452, 1862
Alw21I GWGCWC 1 cut(s) 1741
Alw26I GTCTC 6 cut(s) 130, 1112, 1223, 1240, 1298, 1429
AlwNI CAGNNNCTG 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 6 cut(s) 143, 391, 629, 948, 1606, 1830
ApeKI GCWGC 5 cut(s) 180, 1031, 1526, 1559, 1699
ApoI RAATTY 2 cut(s) 877, 1212
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 5 cut(s) 144, 418, 1481, 1607, 1730
AsuC2I CCSGG 2 cut(s) 779, 1241
AsuHPI GGTGA 3 cut(s) 120, 225, 425
AvaI CYCGRG 1 cut(s) 653
AvaII GGWCC 3 cut(s) 418, 1481, 1730
BaeGI GKGCMC 1 cut(s) 1129
Bbv12I GWGCWC 1 cut(s) 1741
BbvCI CCTCAGC 1 cut(s) 1254
BbvI GCAGC 5 cut(s) 192, 1018, 1538, 1546, 1711
BccI CCATC 4 cut(s) 208, 1138, 1620, 1864
BceAI ACGGC 1 cut(s) 690
BciT130I CCWGG 2 cut(s) 454, 1864
BcnI CCSGG 2 cut(s) 779, 1241
BcoDI GTCTC 6 cut(s) 130, 1112, 1223, 1240, 1298, 1429
BfaI CTAG 3 cut(s) 1122, 1389, 1541
BfrI CTTAAG 1 cut(s) 323
BisI GCNGC 7 cut(s) 119, 181, 1032, 1455, 1527, 1560, 1700
BlsI GCNGC 7 cut(s) 120, 182, 1033, 1456, 1528, 1561, 1701
Bme1390I CCNGG 4 cut(s) 454, 779, 1241, 1864
Bme18I GGWCC 3 cut(s) 418, 1481, 1730
BmeT110I CYCGRG 1 cut(s) 653
BmgT120I GGNCC 5 cut(s) 144, 418, 1481, 1607, 1730
BmiI GGNNCC 4 cut(s) 420, 563, 1483, 1609
BmrFI CCNGG 4 cut(s) 454, 779, 1241, 1864
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 4 cut(s) 1018, 1171, 1651, 1702
BmuI ACTGGG 1 cut(s) 936
BoxI GACNNNNGTC 1 cut(s) 1552
BplI GAGNNNNNCTC 5 cut(s) 27, 1220, 1252, 1247, 1279
Bpu10I CCTNAGC 1 cut(s) 1254
BpuEI CTTGAG 3 cut(s) 222, 232, 1364
BpuMI CCSGG 2 cut(s) 779, 1241
BsaI GGTCTC 2 cut(s) 130, 1429
BsaJI CCNNGG 8 cut(s) 160, 264, 498, 951, 1239, 1371, 1726, 1795
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 245, 275, 725, 755
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 453, 571, 784
Bse1I ACTGG 3 cut(s) 931, 1134, 1420
Bse3DI GCAATG 1 cut(s) 684
BseBI CCWGG 2 cut(s) 454, 1864
BseDI CCNNGG 8 cut(s) 160, 264, 498, 951, 1239, 1371, 1726, 1795
BseGI GGATG 1 cut(s) 1852
BseLI CCNNNNNNNGG 4 cut(s) 141, 453, 571, 784
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 6 cut(s) 267, 1245, 1278, 1449, 1565, 1577
BseNI ACTGG 3 cut(s) 931, 1134, 1420
BseRI GAGGAG 8 cut(s) 54, 91, 94, 614, 617, 700, 707, 950
BseSI GKGCMC 1 cut(s) 1129
BseXI GCAGC 5 cut(s) 192, 1018, 1538, 1546, 1711
BsgI GTGCAG 1 cut(s) 1038
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 6 cut(s) 145, 393, 631, 950, 1608, 1832
BsiHKAI GWGCWC 1 cut(s) 1741
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 2 cut(s) 778, 1241
BslFI GGGAC 1 cut(s) 1467
BslI CCNNNNNNNGG 4 cut(s) 141, 453, 571, 784
BsmAI GTCTC 6 cut(s) 130, 1112, 1223, 1240, 1298, 1429
BsmFI GGGAC 1 cut(s) 1467
BsnI GGCC 6 cut(s) 145, 393, 631, 950, 1608, 1832
Bso31I GGTCTC 2 cut(s) 130, 1429
BsoBI CYCGRG 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 1129, 1741
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 1 cut(s) 230
Bsp19I CCATGG 4 cut(s) 160, 264, 498, 1726
BspACI CCGC 4 cut(s) 94, 119, 788, 1454
BspANI GGCC 6 cut(s) 145, 393, 631, 950, 1608, 1832
BspCNI CTCAG 6 cut(s) 268, 1246, 1277, 1450, 1564, 1576
BspFNI CGCG 1 cut(s) 96
BspHI TCATGA 1 cut(s) 1741
BspLI GGNNCC 4 cut(s) 420, 563, 1483, 1609
BspTI CTTAAG 1 cut(s) 323
BspTNI GGTCTC 2 cut(s) 130, 1429
BsrDI GCAATG 1 cut(s) 684
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 3 cut(s) 931, 1134, 1420
BssECI CCNNGG 8 cut(s) 160, 264, 498, 951, 1239, 1371, 1726, 1795
BssMI GATC 1 cut(s) 230
BssT1I CCWWGG 5 cut(s) 160, 264, 498, 951, 1726
Bst2UI CCWGG 2 cut(s) 454, 1864
Bst4CI ACNGT 3 cut(s) 24, 1234, 1320
Bst6I CTCTTC 2 cut(s) 72, 279
BstAFI CTTAAG 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 1661
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 8 cut(s) 276, 710, 998, 1254, 1264, 1458, 1551, 1563
BstDSI CCRYGG 5 cut(s) 160, 264, 498, 1726, 1795
BstF5I GGATG 1 cut(s) 1852
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 6 cut(s) 130, 1112, 1223, 1240, 1298, 1429
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 8 cut(s) 449, 458, 487, 581, 800, 871, 1348, 1661
BstNI CCWGG 2 cut(s) 454, 1864
BstPAI GACNNNNGTC 1 cut(s) 1552
BstSCI CCNGG 4 cut(s) 452, 777, 1239, 1862
BstSLI GKGCMC 1 cut(s) 1129
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 5 cut(s) 192, 1018, 1538, 1546, 1711
BsuRI GGCC 6 cut(s) 145, 393, 631, 950, 1608, 1832
BtgI CCRYGG 5 cut(s) 160, 264, 498, 1726, 1795
BtsCI GGATG 1 cut(s) 1852
BtsIMutI CAGTG 3 cut(s) 20, 1127, 1316
Cac8I GCNNGC 1 cut(s) 660
CaiI CAGNNNCTG 1 cut(s) 453
CciI TCATGA 1 cut(s) 1741
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 5 cut(s) 144, 418, 1481, 1607, 1730
Csp6I GTAC 2 cut(s) 647, 756
CviQI GTAC 2 cut(s) 647, 756
DdeI CTNAG 8 cut(s) 276, 710, 998, 1254, 1264, 1458, 1551, 1563
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 72, 279
EarI CTCTTC 2 cut(s) 72, 279
EciI GGCGGA 1 cut(s) 803
Eco130I CCWWGG 5 cut(s) 160, 264, 498, 951, 1726
Eco147I AGGCCT 3 cut(s) 631, 950, 1832
Eco31I GGTCTC 2 cut(s) 130, 1429
Eco32I GATATC 2 cut(s) 1272, 1588
Eco47I GGWCC 3 cut(s) 418, 1481, 1730
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 653
EcoO109I RGGNCCY 2 cut(s) 144, 418
EcoRI GAATTC 2 cut(s) 877, 1212
EcoRII CCWGG 2 cut(s) 452, 1862
EcoRV GATATC 2 cut(s) 1272, 1588
EcoT14I CCWWGG 5 cut(s) 160, 264, 498, 951, 1726
ErhI CCWWGG 5 cut(s) 160, 264, 498, 951, 1726
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 1467
FauNDI CATATG 2 cut(s) 796, 1657
Fnu4HI GCNGC 7 cut(s) 119, 181, 1032, 1455, 1527, 1560, 1700
FokI GGATG 1 cut(s) 1839
Fsp4HI GCNGC 7 cut(s) 119, 181, 1032, 1455, 1527, 1560, 1700
FspBI CTAG 3 cut(s) 1122, 1389, 1541
GlaI GCGC 1 cut(s) 97
GluI GCNGC 7 cut(s) 119, 181, 1032, 1455, 1527, 1560, 1700
HaeIII GGCC 6 cut(s) 145, 393, 631, 950, 1608, 1832
HapII CCGG 2 cut(s) 778, 1241
HhaI GCGC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 1413
HindII GTYRAC 1 cut(s) 1413
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 7 cut(s) 296, 344, 430, 706, 1286, 1622, 1631
HpaII CCGG 2 cut(s) 778, 1241
HphI GGTGA 3 cut(s) 120, 225, 425
Hpy166II GTNNAC 1 cut(s) 1413
Hpy188I TCNGA 7 cut(s) 91, 277, 313, 1006, 1267, 1372, 1566
Hpy188III TCNNGA 9 cut(s) 75, 204, 334, 620, 1141, 1166, 1217, 1742, 1772
Hpy8I GTNNAC 1 cut(s) 1413
HpyAV CCTTC 5 cut(s) 404, 492, 835, 940, 1576
HpyCH4III ACNGT 3 cut(s) 24, 1234, 1320
HpyF10VI GCNNNNNNNGC 8 cut(s) 449, 458, 487, 581, 800, 871, 1348, 1661
HpyF3I CTNAG 8 cut(s) 276, 710, 998, 1254, 1264, 1458, 1551, 1563
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 4 cut(s) 67, 937, 955, 1356
Lsp1109I GCAGC 5 cut(s) 192, 1018, 1538, 1546, 1711
LweI GCATC 4 cut(s) 1018, 1171, 1651, 1702
MaeI CTAG 3 cut(s) 1122, 1389, 1541
MaeIII GTNAC 1 cut(s) 969
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 8 cut(s) 59, 102, 105, 163, 296, 326, 997, 1795
MfeI CAATTG 2 cut(s) 1626, 1778
MhlI GDGCHC 2 cut(s) 1129, 1741
MlyI GAGTC 4 cut(s) 305, 353, 424, 1640
MmeI TCCRAC 2 cut(s) 723, 912
MseI TTAA 7 cut(s) 51, 324, 536, 567, 729, 816, 1322
MslI CAYNNNNRTG 1 cut(s) 1494
MspA1I CMGCKG 2 cut(s) 121, 1559
MspCI CTTAAG 1 cut(s) 323
MspI CCGG 2 cut(s) 778, 1241
MspR9I CCNGG 4 cut(s) 454, 779, 1241, 1864
MunI CAATTG 2 cut(s) 1626, 1778
MvaI CCWGG 2 cut(s) 454, 1864
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 8 cut(s) 449, 458, 487, 581, 800, 871, 1348, 1661
NciI CCSGG 2 cut(s) 779, 1241
NcoI CCATGG 4 cut(s) 160, 264, 498, 1726
NdeI CATATG 2 cut(s) 796, 1657
NdeII GATC 1 cut(s) 230
NlaIV GGNNCC 4 cut(s) 420, 563, 1483, 1609
NmuCI GTSAC 1 cut(s) 969
PaeR7I CTCGAG 1 cut(s) 653
PagI TCATGA 1 cut(s) 1741
PceI AGGCCT 3 cut(s) 631, 950, 1832
PfeI GAWTC 3 cut(s) 706, 1286, 1622
PflFI GACNNNGTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 453
PkrI GCNGC 7 cut(s) 120, 182, 1033, 1456, 1528, 1561, 1701
PleI GAGTC 4 cut(s) 304, 352, 424, 1639
PpsI GAGTC 4 cut(s) 304, 352, 424, 1639
PpuMI RGGWCCY 1 cut(s) 418
PshAI GACNNNNGTC 1 cut(s) 1552
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 452, 1862
PspGI CCWGG 2 cut(s) 452, 1862
PspN4I GGNNCC 4 cut(s) 420, 563, 1483, 1609
PspPI GGNCC 5 cut(s) 144, 418, 1481, 1607, 1730
PspPPI RGGWCCY 1 cut(s) 418
PspXI VCTCGAGB 1 cut(s) 653
PstNI CAGNNNCTG 1 cut(s) 453
PsyI GACNNNGTC 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 1559
RsaI GTAC 2 cut(s) 648, 757
RsaNI GTAC 2 cut(s) 647, 756
RseI CAYNNNNRTG 1 cut(s) 1494
SaqAI TTAA 7 cut(s) 51, 324, 536, 567, 729, 816, 1322
SatI GCNGC 7 cut(s) 119, 181, 1032, 1455, 1527, 1560, 1700
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 5 cut(s) 144, 418, 1481, 1607, 1730
SchI GAGTC 4 cut(s) 305, 353, 424, 1640
ScrFI CCNGG 4 cut(s) 454, 779, 1241, 1864
SduI GDGCHC 2 cut(s) 1129, 1741
SfaNI GCATC 4 cut(s) 1018, 1171, 1651, 1702
Sfr274I CTCGAG 1 cut(s) 653
SinI GGWCC 3 cut(s) 418, 1481, 1730
SlaI CTCGAG 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 1494
SmlI CTYRAG 5 cut(s) 237, 247, 323, 653, 1343
SmoI CTYRAG 5 cut(s) 237, 247, 323, 653, 1343
SseBI AGGCCT 3 cut(s) 631, 950, 1832
SsiI CCGC 4 cut(s) 94, 119, 788, 1454
SspMI CTAG 3 cut(s) 1122, 1389, 1541
StuI AGGCCT 3 cut(s) 631, 950, 1832
StyD4I CCNGG 4 cut(s) 452, 777, 1239, 1862
StyI CCWWGG 5 cut(s) 160, 264, 498, 951, 1726
TaaI ACNGT 3 cut(s) 24, 1234, 1320
TaqI TCGA 5 cut(s) 205, 294, 654, 1142, 1773
TatI WGTACW 2 cut(s) 646, 755
TauI GCSGC 2 cut(s) 121, 1457
TfiI GAWTC 3 cut(s) 706, 1286, 1622
Tru1I TTAA 7 cut(s) 51, 324, 536, 567, 729, 816, 1322
Tru9I TTAA 7 cut(s) 51, 324, 536, 567, 729, 816, 1322
TscAI CASTG 3 cut(s) 27, 1134, 1323
TseFI GTSAC 1 cut(s) 969
TseI GCWGC 5 cut(s) 180, 1031, 1526, 1559, 1699
Tsp45I GTSAC 1 cut(s) 969
TspDTI ATGAA 6 cut(s) 227, 629, 854, 1307, 1682, 1860
TspRI CASTG 3 cut(s) 27, 1134, 1323
Tth111I GACNNNGTC 1 cut(s) 433
Van91I CCANNNNNTGG 1 cut(s) 453
Vha464I CTTAAG 1 cut(s) 323
VpaK11BI GGWCC 3 cut(s) 418, 1481, 1730
XapI RAATTY 2 cut(s) 877, 1212
XhoI CTCGAG 1 cut(s) 653
XspI CTAG 3 cut(s) 1122, 1389, 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.