Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015546

Physical Location & Seq

Genomic Coordinates Reverse (-)

18172082 .. 18172714

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAATCTCAATCCAGTCATCGTCATCACGAAGAAGATTCCAAGAGCTCTAGCGATGAAGAAGCCGAGGATCTCAACGATGACTTGGGAACAGGGCGGTCGTACGAGTGTGTGTTTTGCAAGAGAGGATTCACAACAGCACAGGCCTTGGGTGGACACATGAATATTCACCGCAAGGAGAGAGCCAAGCCGAGGCCTACTTCTGCTCCTAGTTCAATTGCAAGCAAAGCAGCTGATGAACATGTGAGTGATCTCATGAGATCCCACCGTTCGTTGCAAAGCTACCCGAGTCCACATTTTGCCACTGATCCGGAGGTGAATGTGAATTACCGGACGTATATTCCGGCGCCTATGTGGATTGTGGGACAAGCTCACAGTGATCATGAGTTATGTGCGAGAAATTATCCGGTAAGGCATCATCAGAATTTGTTTGCTACGGATGATGATTGTCGGAATTGGAGATCGGGGAGTAGTCTGAGCCTGGGAATTGGGCCATCAGCTGATGATGATGATGATGATGAGGATCATCTAGGTCTTGATCATCATAAAAAGGAAATTGAACGAAGTAATGGTGCCTGCAGTAGTGAAGGGGATGGATTGGATTTGGAGCTTCGACTCGGTCATGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

211

Amino Acids

23.41

Weight (kDa)

5.25

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	35 - 60	1e-05	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22030
malus_domestica	MD05G1201300.v1.1 MD10G1188100.v1.1
prunus_persica	Prupe.8G227900_v2.0.a1
pyrus_communis	pycom05g18810 pycom10g16260
rosa_chinensis	RchiOBHm_Chr6g0288891
rosa_laevigata	RLG00000012352
rosa_multiflora	Rmu_sc0005314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00179790
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310500 Rh6BG317000 Rh6CG323700 Rh6DG309400
rosa_wichuraiana	Rw6G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 572
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	2 cut(s)	97, 172
AclWI	GGATC	5 cut(s)	78, 255, 302, 531, 620
AcsI	RAATTY	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	216, 560
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	6 cut(s)	48, 233, 282, 371, 500, 610
AluI	AGCT	6 cut(s)	48, 233, 282, 371, 500, 610
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	5 cut(s)	78, 255, 302, 531, 620
Ama87I	CYCGRG	1 cut(s)	286
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	3 cut(s)	144, 194, 491
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	161, 328
AvaI	CYCGRG	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	346, 572
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	2 cut(s)	502, 587
BciT130I	CCWGG	1 cut(s)	482
BclI	TGATCA	2 cut(s)	379, 538
BfaI	CTAG	3 cut(s)	51, 210, 530
BfmI	CTRYAG	1 cut(s)	577
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	348, 574
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	66, 147, 191, 481
BsaWI	WCCGGW	3 cut(s)	310, 330, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	4 cut(s)	66, 147, 191, 481
BseGI	GGATG	2 cut(s)	445, 598
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	3 cut(s)	146, 196, 493
BshNI	GGYRCC	2 cut(s)	346, 572
BsiEI	CGRYCG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	4 cut(s)	311, 331, 344, 407
BsiWI	CGTACG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	146, 196, 493
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
BspACI	CCGC	2 cut(s)	97, 172
BspANI	GGCC	3 cut(s)	146, 196, 493
BspCNI	CTCAG	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	310
BspHI	TCATGA	3 cut(s)	255, 382, 622
BspLI	GGNNCC	2 cut(s)	348, 574
BspMAI	CTGCAG	1 cut(s)	581
BspPI	GGATC	5 cut(s)	78, 255, 302, 531, 620
BspT107I	GGYRCC	2 cut(s)	346, 572
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	4 cut(s)	66, 147, 191, 481
BssMI	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	269, 377
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	223, 577
BstDEI	CTNAG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	445, 598
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	9 cut(s)	73, 253, 263, 310, 382, 464, 526, 541, 628
BstMBI	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	70, 260
BstYI	RGATCY	2 cut(s)	70, 260
BsuRI	GGCC	3 cut(s)	146, 196, 493
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	445, 598
BtsIMutI	CAGTG	2 cut(s)	303, 382
Cac8I	GCNNGC	2 cut(s)	223, 577
CciI	TCATGA	3 cut(s)	255, 382, 622
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	5 cut(s)	160, 242, 256, 383, 623
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	476
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	9 cut(s)	72, 252, 262, 309, 381, 463, 525, 540, 627
DpnII	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	2 cut(s)	146, 196
Eco24I	GRGCYC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	5 cut(s)	163, 245, 259, 386, 626
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	5 cut(s)	159, 241, 255, 382, 622
FbaI	TGATCA	2 cut(s)	379, 538
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	2 cut(s)	452, 605
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	3 cut(s)	51, 210, 530
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	146, 196, 493
HapII	CCGG	4 cut(s)	311, 331, 344, 407
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	5 cut(s)	163, 245, 259, 386, 626
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	5 cut(s)	5, 38, 129, 289, 615
HpaII	CCGG	4 cut(s)	311, 331, 344, 407
HphI	GGTGA	2 cut(s)	161, 328
Hpy166II	GTNNAC	2 cut(s)	155, 293
Hpy188I	TCNGA	3 cut(s)	423, 453, 477
Hpy188III	TCNNGA	6 cut(s)	29, 256, 311, 383, 536, 623
Hpy8I	GTNNAC	2 cut(s)	155, 293
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	2 cut(s)	269, 377
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	4 cut(s)	120, 221, 277, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	1 cut(s)	335
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	163, 245, 259, 386, 626
HspAI	GCGC	1 cut(s)	347
KasI	GGCGCC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	379, 538
Kzo9I	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
LmnI	GCTCC	2 cut(s)	211, 607
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	51, 210, 530
MaeII	ACGT	1 cut(s)	335
MalI	GATC	9 cut(s)	72, 252, 262, 309, 381, 463, 525, 540, 627
MboI	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
MboII	GAAGA	3 cut(s)	44, 47, 71
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	2 cut(s)	70, 260
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	7 cut(s)	216, 325, 400, 424, 454, 486, 555
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	298, 609
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	5 cut(s)	61, 119, 186, 307, 514
MroI	TCCGGA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	2 cut(s)	233, 500
MspI	CCGG	4 cut(s)	311, 331, 344, 407
MspR9I	CCNGG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	227
NarI	GGCGCC	1 cut(s)	347
NdeII	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
NlaIII	CATG	5 cut(s)	163, 245, 259, 386, 626
NlaIV	GGNNCC	2 cut(s)	348, 574
NmeAIII	GCCGAG	2 cut(s)	91, 216
NspI	RCATGY	1 cut(s)	245
PagI	TCATGA	3 cut(s)	255, 382, 622
PceI	AGGCCT	2 cut(s)	146, 196
PciI	ACATGT	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	5, 38, 129
Pfl23II	CGTACG	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	618
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	297, 609
PluTI	GGCGCC	1 cut(s)	350
PpsI	GAGTC	2 cut(s)	297, 609
PscI	ACATGT	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspLI	CGTACG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	348, 574
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	70, 260
PsyI	GACNNNGTC	1 cut(s)	618
PvuII	CAGCTG	2 cut(s)	233, 500
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	9 cut(s)	70, 250, 260, 307, 379, 461, 523, 538, 625
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	2 cut(s)	298, 609
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	9 cut(s)	50, 235, 284, 318, 338, 373, 502, 535, 612
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	577
SfoI	GGCGCC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	7 cut(s)	216, 325, 400, 424, 454, 486, 555
SseBI	AGGCCT	2 cut(s)	146, 196
SsiI	CCGC	2 cut(s)	97, 172
SspDI	GGCGCC	1 cut(s)	346
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	3 cut(s)	51, 210, 530
SstI	GAGCTC	1 cut(s)	50
StuI	AGGCCT	2 cut(s)	146, 196
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	269, 377
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	1 cut(s)	613
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	7 cut(s)	216, 325, 400, 424, 454, 486, 555
TfiI	GAWTC	3 cut(s)	5, 38, 129
TscAI	CASTG	2 cut(s)	310, 382
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	72, 176, 252
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	310, 382
Tth111I	GACNNNGTC	1 cut(s)	618
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	245
XspI	CTAG	3 cut(s)	51, 210, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.