Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015546

Physical Location & Seq

Genomic Coordinates Reverse (-)

21650130 .. 21650741

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAATCCAACCATCCGGATCATCAAGATTCGAAGACCTCTAGTACTGATGAAGAAGCTGAATACCGACGGGATGTGAACGATGACATGGGCACAGGGCGGTCTTACGAGTGTGTGTTTTGCAAGAGAGGTTTCACAACGGCGCAGGCCTTGGGAGGACACATGAATATTCACCGGAGAGAGAGAGCCAAGACCAGACCTAGTTCGGATCCTACTAATTTGGCTTCGTCGACTAGCAAGGCAGTAGAAGATCAGAGTCATCCGAGGGCAGCGGTATACCATGCAATTCAAAGCTACCCGCCACATTATTTTATAGCTCCTCCGGATGACCATATGAACTATAGAACATATGTGCCTGCACCTAATACATCAGGGGTGTTAAGGCCCCCGCATGCAAATCATATTAGTGATGAGGACTTGTGTGCAAGAAATTATTTCCCGAGGCATCGGAATTTGCTAAGAGATGATCATCAGGATTGGAGATCAGGGAGTAGTTCGAGCTTGGGAATGGGCCGGCCATCAGATGATTACAAGGAGAGAGTGTTTAACGGTGGCAGTGAAGAAGCGGATGATGAATTGGATTTGGAGCTTCGACTCGGTCATGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

204

Amino Acids

23.01

Weight (kDa)

5.66

Isoelectric Point (pI)

62.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22030
malus_domestica	MD05G1201300.v1.1 MD10G1188100.v1.1
prunus_persica	Prupe.8G227900_v2.0.a1
pyrus_communis	pycom05g18810 pycom10g16260
rosa_chinensis	RchiOBHm_Chr6g0288891
rosa_laevigata	RLG00000012352
rosa_multiflora	Rmu_sc0005314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00179790
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310500 Rh6BG317000 Rh6CG323700 Rh6DG309400
rosa_wichuraiana	Rw6G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	230, 276
AccIII	TCCGGA	2 cut(s)	16, 322
AciI	CCGC	5 cut(s)	100, 272, 299, 389, 566
AclWI	GGATC	4 cut(s)	27, 203, 216, 599
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	451
AfaI	GTAC	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	290
AluBI	AGCT	5 cut(s)	59, 294, 317, 501, 589
AluI	AGCT	5 cut(s)	59, 294, 317, 501, 589
AlwI	GGATC	4 cut(s)	27, 203, 216, 599
Ama87I	CYCGRG	1 cut(s)	439
Aor13HI	TCCGGA	2 cut(s)	16, 322
AoxI	GGCC	4 cut(s)	147, 383, 511, 515
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	384, 511
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	2 cut(s)	21, 526
BceAI	ACGGC	1 cut(s)	156
BclI	TGATCA	1 cut(s)	466
BfaI	CTAG	3 cut(s)	42, 201, 234
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	384, 511
BmiI	GGNNCC	2 cut(s)	210, 386
BmsI	GCATC	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	150, 263, 440
BsaWI	WCCGGW	3 cut(s)	16, 174, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bse118I	RCCGGY	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	468
BseAI	TCCGGA	2 cut(s)	16, 322
BseDI	CCNNGG	3 cut(s)	150, 263, 440
BseGI	GGATG	5 cut(s)	13, 79, 259, 331, 574
BseJI	GATNNNNATC	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	149, 385, 513, 517
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	4 cut(s)	17, 175, 323, 514
BsnI	GGCC	4 cut(s)	149, 385, 513, 517
BsoBI	CYCGRG	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp13I	TCCGGA	2 cut(s)	16, 322
Bsp143I	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
BspACI	CCGC	5 cut(s)	100, 272, 299, 389, 566
BspANI	GGCC	4 cut(s)	149, 385, 513, 517
BspEI	TCCGGA	2 cut(s)	16, 322
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	210, 386
BspPI	GGATC	4 cut(s)	27, 203, 216, 599
BspT104I	TTCGAA	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	3 cut(s)	150, 263, 440
BssMI	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
BssNAI	GTATAC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	4 cut(s)	147, 357, 393, 515
BstDEI	CTNAG	1 cut(s)	458
BstF5I	GGATG	5 cut(s)	13, 79, 259, 331, 574
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	6 cut(s)	22, 211, 253, 469, 485, 607
BstMBI	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
BstNSI	RCATGY	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZ17I	GTATAC	1 cut(s)	277
BsuRI	GGCC	4 cut(s)	149, 385, 513, 517
BtsCI	GGATG	5 cut(s)	13, 79, 259, 331, 574
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	4 cut(s)	147, 357, 393, 515
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	384, 511
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	5 cut(s)	88, 163, 281, 392, 602
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	6 cut(s)	21, 210, 252, 468, 484, 606
DpnII	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
EaeI	YGGCCR	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	91, 166, 284, 395, 605
FatI	CATG	5 cut(s)	87, 162, 280, 391, 601
FauI	CCCGC	2 cut(s)	306, 396
FauNDI	CATATG	2 cut(s)	333, 349
FbaI	TGATCA	1 cut(s)	466
FblI	GTMKAC	2 cut(s)	230, 276
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	4 cut(s)	86, 246, 338, 581
FseI	GGCCGGCC	1 cut(s)	517
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	3 cut(s)	42, 201, 234
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	149, 385, 513, 517
HapII	CCGG	4 cut(s)	17, 175, 323, 514
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	91, 166, 284, 395, 605
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	4 cut(s)	5, 29, 256, 594
HpaII	CCGG	4 cut(s)	17, 175, 323, 514
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	79, 231, 277
Hpy188I	TCNGA	5 cut(s)	208, 255, 264, 450, 523
Hpy188III	TCNNGA	6 cut(s)	17, 26, 323, 439, 473, 602
Hpy8I	GTNNAC	3 cut(s)	79, 231, 277
Hpy99I	CGWCG	2 cut(s)	72, 232
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4V	TGCA	5 cut(s)	123, 284, 359, 395, 425
HpyF3I	CTNAG	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	91, 166, 284, 395, 605
HspAI	GCGC	1 cut(s)	143
Kpn2I	TCCGGA	2 cut(s)	16, 322
KroI	GCCGGC	1 cut(s)	513
KroNI	GCCGGC	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
LmnI	GCTCC	2 cut(s)	322, 586
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	3 cut(s)	42, 201, 234
MalI	GATC	6 cut(s)	21, 210, 252, 468, 484, 606
MboI	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
MboII	GAAGA	4 cut(s)	46, 65, 260, 572
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	5 cut(s)	217, 285, 430, 451, 575
MlyI	GAGTC	2 cut(s)	265, 588
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	49, 122, 149, 258, 330, 406, 435
MroI	TCCGGA	2 cut(s)	16, 322
MroNI	GCCGGC	1 cut(s)	513
MseI	TTAA	2 cut(s)	380, 546
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	4 cut(s)	17, 175, 323, 514
NaeI	GCCGGC	1 cut(s)	515
NdeI	CATATG	2 cut(s)	333, 349
NdeII	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
NgoMIV	GCCGGC	1 cut(s)	513
NlaIII	CATG	5 cut(s)	91, 166, 284, 395, 605
NlaIV	GGNNCC	2 cut(s)	210, 386
NspI	RCATGY	1 cut(s)	395
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	395
PagI	TCATGA	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	5, 29
PflFI	GACNNNGTC	1 cut(s)	597
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	264, 588
PpsI	GAGTC	2 cut(s)	264, 588
PspN4I	GGNNCC	2 cut(s)	210, 386
PspPI	GGNCC	2 cut(s)	384, 511
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	597
RigI	GGCCGGCC	1 cut(s)	517
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	405
SalI	GTCGAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	380, 546
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	6 cut(s)	19, 208, 250, 466, 482, 604
Sau96I	GGNCC	2 cut(s)	384, 511
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	265, 588
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	9 cut(s)	41, 61, 133, 202, 296, 319, 364, 503, 591
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	405
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	5 cut(s)	217, 285, 430, 451, 575
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	5 cut(s)	100, 272, 299, 389, 566
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	3 cut(s)	42, 201, 234
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	551
TaqI	TCGA	4 cut(s)	32, 230, 497, 592
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	5 cut(s)	217, 285, 430, 451, 575
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	5, 29
Tru1I	TTAA	2 cut(s)	380, 546
Tru9I	TTAA	2 cut(s)	380, 546
TscAI	CASTG	1 cut(s)	562
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	66, 179, 350, 588
TspRI	CASTG	1 cut(s)	562
Tth111I	GACNNNGTC	1 cut(s)	597
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	1 cut(s)	395
XmiI	GTMKAC	2 cut(s)	230, 276
XspI	CTAG	3 cut(s)	42, 201, 234
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.