Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015546

Physical Location & Seq

Genomic Coordinates Reverse (-)

20410617 .. 20411264

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAACATCATAATCATCAAGATTCAAAGAGCTCTAGCACTGATGAAGAAGCTGATCAACGATCCGATGCGAACGATGGTGTGGGCACCGGGCGGTCCTATGAGTGTGTGTTCTGCAAGAGAGGGTTCACAACAGCGCAGGCCTTGGGTGGACACATGAATATCCACCGCAGAGAGAGAGCGCCCAGGACCAGGCCTAGCTCAGCTCCTAATCTGAGTTCATCCATCAGCAAATCAGTAGATGATCATAACCATCCGGGTTTGAGATCCTACCGTGAGATTCAAAGCTACCCTCCACATTATTCAACGGCTCCTGATCATGATCAGGTGGTGGTAGATCACCATGTGAACTATAGAACATTTATGCCGGCACCTACGGGATCATGGGTTGTGAGGCCTTCTCCACATGCAAATTATGTTAGTGAAGAGGACTTGTGTGCAAGAAATTATATTCCAAGGCACCGGAATCTGTTGACAGATGATCATCGGGATTGGAGATCGGGGAGCAGTTTGAGCTTGGGAATTGGCAGGCCATCGCATGATTTAGACAACAACAAAGACAGAGTGGCTAATGGTGCAGGCAGTGATGAAGAATTGGATTTGGAGCTTCGACTTGGTCACGATCCCTTGTATAATATCAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

216

Amino Acids

24.21

Weight (kDa)

6.12

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22030
malus_domestica	MD05G1201300.v1.1 MD10G1188100.v1.1
prunus_persica	Prupe.8G227900_v2.0.a1
pyrus_communis	pycom05g18810 pycom10g16260
rosa_chinensis	RchiOBHm_Chr6g0288891
rosa_laevigata	RLG00000012352
rosa_multiflora	Rmu_sc0005314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00179790
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310500 Rh6BG317000 Rh6CG323700 Rh6DG309400
rosa_wichuraiana	Rw6G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	86, 370, 459
AciI	CCGC	2 cut(s)	94, 169
AclWI	GGATC	4 cut(s)	57, 261, 388, 617
AdeI	CACNNNGTG	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	27, 284, 306
AjnI	CCWGG	2 cut(s)	185, 191
AluBI	AGCT	7 cut(s)	33, 53, 201, 206, 288, 516, 607
AluI	AGCT	7 cut(s)	33, 53, 201, 206, 288, 516, 607
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	4 cut(s)	57, 261, 388, 617
AoxI	GGCC	4 cut(s)	141, 194, 395, 530
AspLEI	GCGC	2 cut(s)	139, 184
AspS9I	GGNCC	2 cut(s)	96, 189
AsuC2I	CCSGG	2 cut(s)	91, 258
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	96, 189
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	3 cut(s)	86, 370, 459
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BccI	CCATC	4 cut(s)	71, 233, 261, 541
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	2 cut(s)	187, 193
BclI	TGATCA	5 cut(s)	55, 244, 316, 322, 481
BcnI	CCSGG	2 cut(s)	91, 258
BfaI	CTAG	2 cut(s)	36, 198
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	185
BlpI	GCTNAGC	1 cut(s)	202
Bme1390I	CCNGG	4 cut(s)	91, 187, 193, 258
Bme18I	GGWCC	2 cut(s)	96, 189
BmgT120I	GGNCC	2 cut(s)	96, 189
BmiI	GGNNCC	4 cut(s)	88, 312, 372, 461
BmrFI	CCNGG	4 cut(s)	91, 187, 193, 258
BmsI	GCATC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu1102I	GCTNAGC	1 cut(s)	202
BpuMI	CCSGG	2 cut(s)	91, 258
BsaBI	GATNNNNATC	2 cut(s)	321, 483
BsaJI	CCNNGG	3 cut(s)	144, 185, 455
BsaWI	WCCGGW	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	367
Bse8I	GATNNNNATC	2 cut(s)	321, 483
BseBI	CCWGG	2 cut(s)	187, 193
BseDI	CCNNGG	3 cut(s)	144, 185, 455
BseGI	GGATG	2 cut(s)	221, 253
BseJI	GATNNNNATC	2 cut(s)	321, 483
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	206, 216
BseSI	GKGCMC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	4 cut(s)	143, 196, 397, 532
BshNI	GGYRCC	3 cut(s)	86, 370, 459
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	90, 257, 368, 463
BslI	CCNNNNNNNGG	1 cut(s)	192
BsnI	GGCC	4 cut(s)	143, 196, 397, 532
Bsp1286I	GDGCHC	2 cut(s)	35, 89
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	94, 169
BspANI	GGCC	4 cut(s)	143, 196, 397, 532
BspCNI	CTCAG	2 cut(s)	207, 215
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	88, 312, 372, 461
BspPI	GGATC	4 cut(s)	57, 261, 388, 617
BspT107I	GGYRCC	3 cut(s)	86, 370, 459
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	144, 185, 455
BssT1I	CCWWGG	2 cut(s)	144, 455
Bst2UI	CCWGG	2 cut(s)	187, 193
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	141, 369, 530, 580
BstDEI	CTNAG	2 cut(s)	202, 215
BstF5I	GGATG	2 cut(s)	221, 253
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	139, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 575
BstNI	CCWGG	2 cut(s)	187, 193
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	4 cut(s)	89, 185, 191, 256
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	143, 196, 397, 532
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	221, 253
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	2 cut(s)	39, 589
Cac8I	GCNNGC	4 cut(s)	141, 369, 530, 580
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	2 cut(s)	139, 184
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	96, 189
CviAII	CATG	6 cut(s)	157, 320, 344, 384, 407, 539
DdeI	CTNAG	2 cut(s)	202, 215
DraIII	CACNNNGTG	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	144, 455
Eco147I	AGGCCT	3 cut(s)	143, 196, 397
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	96, 189
Eco53kI	GAGCTC	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	185, 191
EcoT14I	CCWWGG	2 cut(s)	144, 455
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	2 cut(s)	144, 455
FaeI	CATG	6 cut(s)	160, 323, 347, 387, 410, 542
FatI	CATG	6 cut(s)	156, 319, 343, 383, 406, 538
FbaI	TGATCA	5 cut(s)	55, 244, 316, 322, 481
FokI	GGATG	2 cut(s)	208, 240
FriOI	GRGCYC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	36, 198
GlaI	GCGC	2 cut(s)	138, 183
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	4 cut(s)	143, 196, 397, 532
HapII	CCGG	4 cut(s)	90, 257, 368, 463
HhaI	GCGC	2 cut(s)	139, 184
Hin1II	CATG	6 cut(s)	160, 323, 347, 387, 410, 542
Hin6I	GCGC	2 cut(s)	137, 182
HinP1I	GCGC	2 cut(s)	137, 182
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	3 cut(s)	23, 280, 466
HpaII	CCGG	4 cut(s)	90, 257, 368, 463
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	4 cut(s)	129, 152, 349, 474
Hpy188I	TCNGA	2 cut(s)	67, 216
Hpy188III	TCNNGA	5 cut(s)	20, 314, 320, 488, 620
Hpy8I	GTNNAC	4 cut(s)	129, 152, 349, 474
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	4 cut(s)	117, 410, 440, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 575
HpyF3I	CTNAG	2 cut(s)	202, 215
Hsp92II	CATG	6 cut(s)	160, 323, 347, 387, 410, 542
HspAI	GCGC	2 cut(s)	137, 182
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	5 cut(s)	55, 244, 316, 322, 481
LmnI	GCTCC	4 cut(s)	211, 316, 504, 604
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	36, 198
MaeIII	GTNAC	1 cut(s)	617
MboII	GAAGA	3 cut(s)	59, 437, 602
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	35, 89
MluCI	AATT	4 cut(s)	412, 445, 522, 593
MnlI	CCTC	4 cut(s)	116, 303, 387, 421
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	1 cut(s)	646
MspI	CCGG	4 cut(s)	90, 257, 368, 463
MspR9I	CCNGG	4 cut(s)	91, 187, 193, 258
MvaI	CCWGG	2 cut(s)	187, 193
MwoI	GCNNNNNNNGC	2 cut(s)	513, 575
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	2 cut(s)	91, 258
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	6 cut(s)	160, 323, 347, 387, 410, 542
NlaIV	GGNNCC	4 cut(s)	88, 312, 372, 461
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	319
PceI	AGGCCT	3 cut(s)	143, 196, 397
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	23, 280, 466
PflFI	GACNNNGTC	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	185, 191
PspGI	CCWGG	2 cut(s)	185, 191
PspN4I	GGNNCC	4 cut(s)	88, 312, 372, 461
PspPI	GGNCC	2 cut(s)	96, 189
PsuI	RGATCY	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	615
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	646
Sau96I	GGNCC	2 cut(s)	96, 189
ScrFI	CCNGG	4 cut(s)	91, 187, 193, 258
SduI	GDGCHC	2 cut(s)	35, 89
SetI	ASST	9 cut(s)	35, 55, 203, 208, 290, 330, 376, 518, 609
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	96, 189
Sse9I	AATT	4 cut(s)	412, 445, 522, 593
SseBI	AGGCCT	3 cut(s)	143, 196, 397
SsiI	CCGC	2 cut(s)	94, 169
SspMI	CTAG	2 cut(s)	36, 198
SstI	GAGCTC	1 cut(s)	35
StuI	AGGCCT	3 cut(s)	143, 196, 397
StyD4I	CCNGG	4 cut(s)	89, 185, 191, 256
StyI	CCWWGG	2 cut(s)	144, 455
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	610
TasI	AATT	4 cut(s)	412, 445, 522, 593
TfiI	GAWTC	3 cut(s)	23, 280, 466
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	2 cut(s)	46, 589
TseFI	GTSAC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	4 cut(s)	60, 173, 210, 603
TspRI	CASTG	2 cut(s)	46, 589
Tth111I	GACNNNGTC	1 cut(s)	615
VpaK11BI	GGWCC	2 cut(s)	96, 189
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	2 cut(s)	36, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.