Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015546

Physical Location & Seq

Genomic Coordinates Forward (+)

17755873 .. 17756505

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAATCTCAATCTAACCATCGTCAGGATGAAGAAGATTCGAAGAGCTCTAGCGATGAAGAAGCTGAGGATCTCAACGATGACTTGGGAACAGGGCGGTCATATGAGTGTGTGTTTTGCAAGAGAGGATTCACAACAGCACAGGCCTTGGGTGGACACATGAATATTCACCGCAAGGAGAGAGCCAAGCCGAGGCCTACTTCTGCTCCTACTTCAATTGCAAGCAAAGCAGCTGATGAACACGTGAGTGATCTCATGAGATCCTACCGTTCGTTGCAAAGCTACACGGGTCCACATTTTTCCACAGCTCCGGAGGTGGATGTGAATTACCGGACGTATATTCCGGCGCCTACGTGGATTGTGGGACAAGCTTACAGTGATCATGAGGAGTTATGTGCGAGGAATTATCAGCCACGGCATCATCAGAATTTATTTGCTACAGATGGTGATTGTCGGAATTGGAGATCGGGGAGTGGTCTGAGCTTGGGAATTGGGCCATCAGCTCATGATGATGATGATGAGGATCAAGTAGGTCATGATCATCATAAAAAAGAAATTGAACGAATTAATGGTGCCTGCAGTAGTGAAGGGGATGGATTGGATTTGGAGCTTCGACTCGGTCATGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

211

Amino Acids

23.39

Weight (kDa)

5.13

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	35 - 60	1e-05	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22030
malus_domestica	MD05G1201300.v1.1 MD10G1188100.v1.1
prunus_persica	Prupe.8G227900_v2.0.a1
pyrus_communis	pycom05g18810 pycom10g16260
rosa_chinensis	RchiOBHm_Chr6g0288891
rosa_laevigata	RLG00000012352
rosa_multiflora	Rmu_sc0005314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00179790
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310500 Rh6BG317000 Rh6CG323700 Rh6DG309400
rosa_wichuraiana	Rw6G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 572
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	2 cut(s)	97, 172
AclWI	GGATC	4 cut(s)	78, 255, 531, 620
AcsI	RAATTY	1 cut(s)	427
AcvI	CACGTG	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	25, 192
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	216, 560
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	9 cut(s)	48, 65, 233, 282, 308, 371, 483, 503, 610
AluI	AGCT	9 cut(s)	48, 65, 233, 282, 308, 371, 483, 503, 610
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	78, 255, 531, 620
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	3 cut(s)	144, 194, 494
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	427
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	290, 494
AsuHPI	GGTGA	2 cut(s)	161, 458
AsuII	TTCGAA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	290
BanI	GGYRCC	2 cut(s)	346, 572
BanII	GRGCYC	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	4 cut(s)	27, 437, 505, 587
BceAI	ACGGC	1 cut(s)	431
BclI	TGATCA	2 cut(s)	379, 538
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	438, 577
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 494
BmiI	GGNNCC	3 cut(s)	291, 348, 574
BmsI	GCATC	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	41
BsaAI	YACGTR	2 cut(s)	244, 354
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	147, 191, 413
BsaWI	WCCGGW	2 cut(s)	310, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 192
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	147, 191, 413
BseGI	GGATG	3 cut(s)	34, 325, 598
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	25, 192
BseMII	CTCAG	2 cut(s)	57, 470
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	3 cut(s)	146, 196, 496
BshNI	GGYRCC	2 cut(s)	346, 572
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	311, 331, 344
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	25, 192
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	146, 196, 496
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
BspACI	CCGC	2 cut(s)	97, 172
BspANI	GGCC	3 cut(s)	146, 196, 496
BspCNI	CTCAG	2 cut(s)	58, 471
BspEI	TCCGGA	1 cut(s)	310
BspHI	TCATGA	5 cut(s)	255, 382, 505, 535, 622
BspLI	GGNNCC	3 cut(s)	291, 348, 574
BspMAI	CTGCAG	1 cut(s)	581
BspPI	GGATC	4 cut(s)	78, 255, 531, 620
BspQI	GCTCTTC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	41
BspT107I	GGYRCC	2 cut(s)	346, 572
BssECI	CCNNGG	3 cut(s)	147, 191, 413
BssMI	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	269, 377
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	347
BstBAI	YACGTR	2 cut(s)	244, 354
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	223, 577
BstDEI	CTNAG	2 cut(s)	66, 479
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	3 cut(s)	34, 325, 598
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	8 cut(s)	73, 253, 263, 382, 467, 526, 541, 628
BstMBI	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstSFI	CTRYAG	2 cut(s)	438, 577
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	70, 260
BstYI	RGATCY	2 cut(s)	70, 260
BsuRI	GGCC	3 cut(s)	146, 196, 496
BtgI	CCRYGG	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	34, 325, 598
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	223, 577
CciI	TCATGA	5 cut(s)	255, 382, 505, 535, 622
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	290, 494
CviAII	CATG	6 cut(s)	160, 256, 383, 506, 536, 623
DdeI	CTNAG	2 cut(s)	66, 479
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	8 cut(s)	72, 252, 262, 381, 466, 525, 540, 627
DpnII	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	2 cut(s)	146, 196
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	48
Eco72I	CACGTG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	163, 259, 386, 509, 539, 626
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	6 cut(s)	159, 255, 382, 505, 535, 622
FauNDI	CATATG	1 cut(s)	103
FbaI	TGATCA	2 cut(s)	379, 538
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	3 cut(s)	41, 332, 605
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	146, 196, 496
HapII	CCGG	3 cut(s)	311, 331, 344
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	6 cut(s)	163, 259, 386, 509, 539, 626
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	4 cut(s)	5, 38, 129, 615
HpaII	CCGG	3 cut(s)	311, 331, 344
HphI	GGTGA	2 cut(s)	161, 458
Hpy166II	GTNNAC	2 cut(s)	155, 293
Hpy188I	TCNGA	3 cut(s)	426, 456, 480
Hpy188III	TCNNGA	7 cut(s)	26, 256, 311, 383, 506, 536, 623
Hpy8I	GTNNAC	2 cut(s)	155, 293
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	2 cut(s)	269, 377
HpyCH4IV	ACGT	3 cut(s)	243, 335, 353
HpyCH4V	TGCA	4 cut(s)	120, 221, 277, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	66, 479
HpySE526I	ACGT	3 cut(s)	243, 335, 353
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	6 cut(s)	163, 259, 386, 509, 539, 626
HspAI	GCGC	1 cut(s)	347
KasI	GGCGCC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	379, 538
Kzo9I	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	211, 313, 607
LpnPI	CCDG	7 cut(s)	11, 78, 128, 324, 344, 357, 589
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	3 cut(s)	243, 335, 353
MalI	GATC	8 cut(s)	72, 252, 262, 381, 466, 525, 540, 627
MboI	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
MboII	GAAGA	4 cut(s)	44, 47, 55, 71
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	2 cut(s)	70, 260
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	8 cut(s)	216, 325, 403, 427, 457, 489, 555, 564
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	609
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	7 cut(s)	61, 119, 186, 307, 379, 393, 514
MroI	TCCGGA	1 cut(s)	310
MseI	TTAA	2 cut(s)	567, 631
MslI	CAYNNNNRTG	3 cut(s)	106, 246, 510
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	3 cut(s)	311, 331, 344
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	227
NarI	GGCGCC	1 cut(s)	347
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
NlaIII	CATG	6 cut(s)	163, 259, 386, 509, 539, 626
NlaIV	GGNNCC	3 cut(s)	291, 348, 574
NmeAIII	GCCGAG	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	246
PagI	TCATGA	5 cut(s)	255, 382, 505, 535, 622
PceI	AGGCCT	2 cut(s)	146, 196
PciSI	GCTCTTC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	5, 38, 129
PflFI	GACNNNGTC	1 cut(s)	618
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	609
PluTI	GGCGCC	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	609
Ppu21I	YACGTR	2 cut(s)	244, 354
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	291, 348, 574
PspPI	GGNCC	2 cut(s)	290, 494
PstI	CTGCAG	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	70, 260
PsyI	GACNNNGTC	1 cut(s)	618
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	3 cut(s)	106, 246, 510
SacI	GAGCTC	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	567, 631
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	8 cut(s)	70, 250, 260, 379, 464, 523, 538, 625
Sau96I	GGNCC	2 cut(s)	290, 494
SchI	GAGTC	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	2 cut(s)	438, 577
SfoI	GGCGCC	1 cut(s)	348
SfuI	TTCGAA	1 cut(s)	41
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	3 cut(s)	106, 246, 510
Sse9I	AATT	8 cut(s)	216, 325, 403, 427, 457, 489, 555, 564
SseBI	AGGCCT	2 cut(s)	146, 196
SsiI	CCGC	2 cut(s)	97, 172
SspDI	GGCGCC	1 cut(s)	346
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	50
StuI	AGGCCT	2 cut(s)	146, 196
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	269, 377
TaiI	ACGT	3 cut(s)	246, 338, 356
TaqI	TCGA	2 cut(s)	41, 613
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	8 cut(s)	216, 325, 403, 427, 457, 489, 555, 564
TfiI	GAWTC	3 cut(s)	5, 38, 129
Tru1I	TTAA	2 cut(s)	567, 631
Tru9I	TTAA	2 cut(s)	567, 631
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	45, 72, 176, 252
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	618
VpaK11BI	GGWCC	1 cut(s)	290
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	427
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.