Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015546

Physical Location & Seq

Genomic Coordinates Reverse (-)

28295377 .. 28295919

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1188100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAGTCCAACCATCAGGATCATCAAGATTCAAAGACCTCCAGTACTGATGAAGAGGCTGATCATCAACCGCATGCGAACGATGACATGGGCACAGGGCGGTCGTACGAGTGTGTATTTTGCAAGAGAGGTTTCACAACGGCGCAGGCCTTGGGAGGACACATGAATATTCACCGGAAAGAGAGAGCCAAGACCAGACCTAGTTCAATTCCTACAAGTTTGGCTTCGTCGATTAGCACGGCAGTAGAAGATCAGAATCATCCGAGGGCAGCATTATACCGTGCAATTCAAAGCTACCGGCCAGGGGTGTTAAGGCCCCCACATGCAAATCATATTAGTGATGAGGACTTGTGTGCAAGAAATTATATTCCCAGGCACCGGAATCTGCTAAGAGATGATCATCGGGATTGGAGATCAGGGAGTAGTTTGAGCTTGGGAATGGGCCAGCCATCGGATGATTACAAGGAGAGAGTGATTAATGGTGGCCTTGAAGAAACGGACGATGAATTGGATTTGGAGCTTCGACTTGGTCATGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

181

Amino Acids

20.28

Weight (kDa)

6.03

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	36 - 61	8.3e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22030
malus_domestica	MD05G1201300.v1.1 MD10G1188100.v1.1
prunus_persica	Prupe.8G227900_v2.0.a1
pyrus_communis	pycom05g18810 pycom10g16260
rosa_chinensis	RchiOBHm_Chr6g0288891
rosa_laevigata	RLG00000012352
rosa_multiflora	Rmu_sc0005314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00179790
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310500 Rh6BG317000 Rh6CG323700 Rh6DG309400
rosa_wichuraiana	Rw6G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	375
AciI	CCGC	2 cut(s)	71, 100
AclWI	GGATC	2 cut(s)	27, 530
AcoI	YGGCCR	1 cut(s)	299
AfaI	GTAC	2 cut(s)	46, 107
AfiI	CCNNNNNNNGG	3 cut(s)	304, 378, 451
AgsI	TTSAA	4 cut(s)	33, 207, 290, 491
AjnI	CCWGG	2 cut(s)	301, 371
AluBI	AGCT	3 cut(s)	294, 432, 520
AluI	AGCT	3 cut(s)	294, 432, 520
AlwI	GGATC	2 cut(s)	27, 530
AoxI	GGCC	5 cut(s)	147, 299, 314, 442, 484
ApeKI	GCWGC	1 cut(s)	269
AseI	ATTAAT	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	315, 442
AsuHPI	GGTGA	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	2 cut(s)	21, 457
BceAI	ACGGC	2 cut(s)	156, 255
BciT130I	CCWGG	2 cut(s)	303, 373
BclI	TGATCA	2 cut(s)	61, 397
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	303, 373
BmgT120I	GGNCC	2 cut(s)	315, 442
BmiI	GGNNCC	2 cut(s)	317, 377
BmrFI	CCNGG	2 cut(s)	303, 373
BpmI	CTGGAG	1 cut(s)	25
BsaBI	GATNNNNATC	2 cut(s)	255, 399
BsaJI	CCNNGG	4 cut(s)	150, 263, 302, 371
BsaWI	WCCGGW	2 cut(s)	174, 378
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 378, 451
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	42
Bse8I	GATNNNNATC	2 cut(s)	255, 399
BseBI	CCWGG	2 cut(s)	303, 373
BseDI	CCNNGG	4 cut(s)	150, 263, 302, 371
BseGI	GGATG	2 cut(s)	259, 460
BseJI	GATNNNNATC	2 cut(s)	255, 399
BseLI	CCNNNNNNNGG	3 cut(s)	304, 378, 451
BseNI	ACTGG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	5 cut(s)	149, 301, 316, 444, 486
BshNI	GGYRCC	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	175, 298, 379
BsiWI	CGTACG	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	304, 378, 451
BsnI	GGCC	5 cut(s)	149, 301, 316, 444, 486
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
BspACI	CCGC	2 cut(s)	71, 100
BspANI	GGCC	5 cut(s)	149, 301, 316, 444, 486
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	317, 377
BspPI	GGATC	2 cut(s)	27, 530
BspT107I	GGYRCC	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	4 cut(s)	150, 263, 302, 371
BssMI	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	303, 373
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	75, 147, 446
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	259, 460
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	6 cut(s)	22, 64, 253, 400, 416, 538
BstMBI	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
BstMCI	CGRYCG	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	303, 373
BstNSI	RCATGY	2 cut(s)	77, 326
BstSCI	CCNGG	2 cut(s)	301, 371
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	281
BsuRI	GGCC	5 cut(s)	149, 301, 316, 444, 486
BtsCI	GGATG	2 cut(s)	259, 460
Cac8I	GCNNGC	3 cut(s)	75, 147, 446
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	315, 442
Csp6I	GTAC	2 cut(s)	45, 106
CviAII	CATG	5 cut(s)	74, 88, 163, 323, 533
CviQI	GTAC	2 cut(s)	45, 106
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	6 cut(s)	21, 63, 252, 399, 415, 537
DpnII	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
EaeI	YGGCCR	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	301, 371
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	77, 91, 166, 326, 536
FaiI	YATR	8 cut(s)	75, 89, 164, 277, 324, 333, 366, 534
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	5 cut(s)	73, 87, 162, 322, 532
FbaI	TGATCA	2 cut(s)	61, 397
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	246, 467
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	5 cut(s)	149, 301, 316, 444, 486
HapII	CCGG	3 cut(s)	175, 298, 379
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	77, 91, 166, 326, 536
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	3 cut(s)	29, 256, 382
HpaII	CCGG	3 cut(s)	175, 298, 379
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	255, 264, 454
Hpy188III	TCNNGA	4 cut(s)	17, 26, 404, 533
Hpy99I	CGWCG	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	4 cut(s)	123, 284, 326, 356
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	5 cut(s)	77, 91, 166, 326, 536
HspAI	GCGC	1 cut(s)	143
Ksp22I	TGATCA	2 cut(s)	61, 397
Kzo9I	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	201
MalI	GATC	6 cut(s)	21, 63, 252, 399, 415, 537
MboI	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
MboII	GAAGA	3 cut(s)	65, 260, 503
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	4 cut(s)	207, 285, 361, 506
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	49, 49, 122, 149, 258, 337
MseI	TTAA	2 cut(s)	311, 477
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	3 cut(s)	175, 298, 379
MspR9I	CCNGG	2 cut(s)	303, 373
MvaI	CCWGG	2 cut(s)	303, 373
NdeII	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
NlaIII	CATG	5 cut(s)	77, 91, 166, 326, 536
NlaIV	GGNNCC	2 cut(s)	317, 377
NspI	RCATGY	2 cut(s)	77, 326
PaeI	GCATGC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	29, 256, 382
Pfl23II	CGTACG	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	528
PkrI	GCNGC	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	301, 371
PspGI	CCWGG	2 cut(s)	301, 371
PspLI	CGTACG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	317, 377
PspPI	GGNCC	2 cut(s)	315, 442
PsyI	GACNNNGTC	1 cut(s)	528
RsaI	GTAC	2 cut(s)	46, 107
RsaNI	GTAC	2 cut(s)	45, 106
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	311, 477
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	6 cut(s)	19, 61, 250, 397, 413, 535
Sau96I	GGNCC	2 cut(s)	315, 442
ScaI	AGTACT	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	303, 373
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	6 cut(s)	41, 133, 202, 296, 434, 522
SmiMI	CAYNNNNRTG	1 cut(s)	336
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	4 cut(s)	207, 285, 361, 506
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	71, 100
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	301, 371
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	230, 523
TasI	AATT	4 cut(s)	207, 285, 361, 506
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	29, 256, 382
Tru1I	TTAA	2 cut(s)	311, 477
Tru9I	TTAA	2 cut(s)	311, 477
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	17, 66, 179, 519
TspGWI	ACGGA	1 cut(s)	512
Tth111I	GACNNNGTC	1 cut(s)	528
VspI	ATTAAT	1 cut(s)	477
XceI	RCATGY	2 cut(s)	77, 326
XspI	CTAG	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.