Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015546

Physical Location & Seq

Genomic Coordinates Reverse (-)

19445695 .. 19446183

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATCGATCAAGATTCAAAGACCTCCAGTACTGAGGAAGAGGCTGATCATCAACCGGATGCGAACGATGACATGGGCACAGGGCGGTCGTACGAGTGTGTATTTTGCAAGAGAGGTTTCACAACGGCGCAGGCCTTGGGAGGACACATGAATATTCACCGGAAAGAGAGAGCCAAGACCAGACCTAGTTCAGCTCCTACAAGTTTGGCTTCGTCGATTAGCACGGCAGTAGAAGATCAGAATCATCCCAGGGCAGCATTATACCGGGCAATTCAAAGCTACCGGCCAGGGCCGCCACATTATTTTATAGCTCTTCCGGATGACCATATGAACTATAGAACAGATGTGCCTGCATCTAATACATCAGGGGTGTTAAGGCCCCCACATGCAAATCATATTAGTGATGAGGACTTGTGTGCAAGAAATTATATTCCGAGGCACCGGAATCTGCTAAGAGATGATCGATCGGGATTGGAGATCAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

163

Amino Acids

18.17

Weight (kDa)

6.29

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	31 - 56	7.1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22030
malus_domestica	MD05G1201300.v1.1 MD10G1188100.v1.1
prunus_persica	Prupe.8G227900_v2.0.a1
pyrus_communis	pycom05g18810 pycom10g16260
rosa_chinensis	RchiOBHm_Chr6g0288891
rosa_laevigata	RLG00000012352
rosa_multiflora	Rmu_sc0005314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00179790
rosa_rugosa	Rorug06G0199000
rosa_samantha	Rh6AG310500 Rh6BG317000 Rh6CG323700 Rh6DG309400
rosa_wichuraiana	Rw6G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	2 cut(s)	85, 293
AcoI	YGGCCR	1 cut(s)	284
AfaI	GTAC	2 cut(s)	31, 92
AgsI	TTSAA	2 cut(s)	18, 275
AjnI	CCWGG	2 cut(s)	248, 286
AluBI	AGCT	3 cut(s)	194, 279, 311
AluI	AGCT	3 cut(s)	194, 279, 311
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	4 cut(s)	132, 284, 290, 377
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	290, 378
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	141, 240
BciT130I	CCWGG	2 cut(s)	250, 288
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	2 cut(s)	255, 293
BlsI	GCNGC	2 cut(s)	256, 294
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	250, 266, 288
BmgT120I	GGNCC	2 cut(s)	290, 378
BmiI	GGNNCC	2 cut(s)	380, 440
BmrFI	CCNGG	3 cut(s)	250, 266, 288
BmsI	GCATC	2 cut(s)	49, 362
BpmI	CTGGAG	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	266
Bsa29I	ATCGAT	2 cut(s)	6, 463
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	5 cut(s)	135, 248, 249, 287, 434
BsaWI	WCCGGW	4 cut(s)	55, 159, 316, 441
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	250, 288
BseCI	ATCGAT	2 cut(s)	6, 463
BseDI	CCNNGG	5 cut(s)	135, 248, 249, 287, 434
BseGI	GGATG	3 cut(s)	64, 244, 325
BseJI	GATNNNNATC	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	2 cut(s)	89, 467
BshFI	GGCC	4 cut(s)	134, 286, 292, 379
BshNI	GGYRCC	1 cut(s)	438
BshVI	ATCGAT	2 cut(s)	6, 463
BsiEI	CGRYCG	2 cut(s)	89, 467
BsiSI	CCGG	6 cut(s)	56, 160, 265, 283, 317, 442
BsiWI	CGTACG	1 cut(s)	90
BsnI	GGCC	4 cut(s)	134, 286, 292, 379
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
BspACI	CCGC	2 cut(s)	85, 293
BspANI	GGCC	4 cut(s)	134, 286, 292, 379
BspCNI	CTCAG	1 cut(s)	25
BspDI	ATCGAT	2 cut(s)	6, 463
BspEI	TCCGGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	380, 440
BspQI	GCTCTTC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	5 cut(s)	135, 248, 249, 287, 434
BssMI	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	250, 288
Bst6I	CTCTTC	2 cut(s)	33, 318
BstC8I	GCNNGC	2 cut(s)	132, 351
BstDEI	CTNAG	2 cut(s)	33, 452
BstF5I	GGATG	3 cut(s)	64, 244, 325
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	7 cut(s)	6, 10, 49, 238, 463, 467, 480
BstMBI	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
BstMCI	CGRYCG	2 cut(s)	89, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	250, 288
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	248, 264, 286
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	266
Bsu15I	ATCGAT	2 cut(s)	6, 463
BsuRI	GGCC	4 cut(s)	134, 286, 292, 379
BsuTUI	ATCGAT	2 cut(s)	6, 463
BtsCI	GGATG	3 cut(s)	64, 244, 325
Cac8I	GCNNGC	2 cut(s)	132, 351
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	290, 378
ClaI	ATCGAT	2 cut(s)	6, 463
Csp6I	GTAC	2 cut(s)	30, 91
CviAII	CATG	3 cut(s)	73, 148, 386
CviQI	GTAC	2 cut(s)	30, 91
DdeI	CTNAG	2 cut(s)	33, 452
DpnI	GATC	7 cut(s)	5, 9, 48, 237, 462, 466, 479
DpnII	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	33, 318
EarI	CTCTTC	2 cut(s)	33, 318
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	248, 286
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	76, 151, 389
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FatI	CATG	3 cut(s)	72, 147, 385
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	255, 293
FokI	GGATG	3 cut(s)	71, 231, 332
Fsp4HI	GCNGC	2 cut(s)	255, 293
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	255, 293
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	4 cut(s)	134, 286, 292, 379
HapII	CCGG	6 cut(s)	56, 160, 265, 283, 317, 442
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	76, 151, 389
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	3 cut(s)	14, 241, 445
HpaII	CCGG	6 cut(s)	56, 160, 265, 283, 317, 442
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	240, 435
Hpy188III	TCNNGA	3 cut(s)	11, 317, 468
Hpy99I	CGWCG	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	108, 353, 389, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	33, 452
Hsp92II	CATG	3 cut(s)	76, 151, 389
HspAI	GCGC	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	49, 362
MaeI	CTAG	1 cut(s)	186
MalI	GATC	7 cut(s)	5, 9, 48, 237, 462, 466, 479
MboI	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
MboII	GAAGA	3 cut(s)	50, 245, 305
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	2 cut(s)	270, 424
MnlI	CCTC	7 cut(s)	28, 34, 34, 107, 134, 400, 429
MroI	TCCGGA	1 cut(s)	316
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	6 cut(s)	56, 160, 265, 283, 317, 442
MspR9I	CCNGG	3 cut(s)	250, 266, 288
MvaI	CCWGG	2 cut(s)	250, 288
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	266
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
NlaIII	CATG	3 cut(s)	76, 151, 389
NlaIV	GGNNCC	2 cut(s)	380, 440
NspI	RCATGY	1 cut(s)	389
PasI	CCCWGGG	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	14, 241, 445
Pfl23II	CGTACG	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	256, 294
Ple19I	CGATCG	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	248, 286
PspGI	CCWGG	2 cut(s)	248, 286
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	380, 440
PspPI	GGNCC	2 cut(s)	290, 378
PvuI	CGATCG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	31, 92
RsaNI	GTAC	2 cut(s)	30, 91
RseI	CAYNNNNRTG	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	2 cut(s)	255, 293
Sau3AI	GATC	7 cut(s)	3, 7, 46, 235, 460, 464, 477
Sau96I	GGNCC	2 cut(s)	290, 378
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	3 cut(s)	250, 266, 288
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	6 cut(s)	26, 118, 187, 196, 281, 313
SfaNI	GCATC	2 cut(s)	49, 362
SfcI	CTRYAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	2 cut(s)	270, 424
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	85, 293
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	3 cut(s)	248, 264, 286
StyI	CCWWGG	1 cut(s)	135
TaqI	TCGA	3 cut(s)	6, 215, 463
TasI	AATT	2 cut(s)	270, 424
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	3 cut(s)	14, 241, 445
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	164, 344
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.