Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018799

Physical Location & Seq

Genomic Coordinates Forward (+)

18616413 .. 18617059

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTCAGCTCAACTCCCACCTGGGTTCTCACCCTGGTCTTGTTCTTGAGCTTCTTCTCATCCTACCAAGCTGTTGTGGAAGACGACGTCAAGTGCCTTCAGGGGATTAAAGAAGCTTTCAAGGACCCTCTTGGGAAGCTCGAGTCTTGGGACTTCTCCAACTCCTATGTGGTCGTCTGCCACTTTTCGATTGAGTACTGCATTAGCTTGACGAATCTGGATCTTGGAGGGAATGACCTTAATGGACAGATACCTAAAGAGTTGTGTTCCTGGCTGCCGTATTTGGTTACTCTTGATTTGTCCGGGAATGAATTCACGGGTCCAATCCCGGTTGATTTGAGTAAATGTACTTACTTGAATAATTTGATTCTTTCGGATAATAAGCTTTCAAGGAGTATTCCTTGGAGTTGTGAATTTGGTGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

143

Amino Acids

15.93

Weight (kDa)

4.35

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica	MD13G1271100.v1.1
prunus_persica	Prupe.4G279200_v2.0.a1
pyrus_communis	pycom17g03900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	311, 413
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	197, 349
AgsI	TTSAA	3 cut(s)	121, 358, 390
AjnI	CCWGG	3 cut(s)	20, 33, 269
AluBI	AGCT	7 cut(s)	9, 51, 71, 116, 139, 207, 385
AluI	AGCT	7 cut(s)	9, 51, 71, 116, 139, 207, 385
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	311, 413
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	124, 320
AsuC2I	CCSGG	2 cut(s)	304, 329
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	124, 320
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	3 cut(s)	22, 35, 271
BcnI	CCSGG	2 cut(s)	304, 329
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	5 cut(s)	22, 35, 271, 304, 329
Bme18I	GGWCC	2 cut(s)	124, 320
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	124, 320
BmiI	GGNNCC	2 cut(s)	126, 321
BmrFI	CCNGG	5 cut(s)	22, 35, 271, 304, 329
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	304, 329
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	21, 33, 401
BseBI	CCWGG	3 cut(s)	22, 35, 271
BseDI	CCNNGG	3 cut(s)	21, 33, 401
BseGI	GGATG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	303, 329
BslFI	GGGAC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	126, 321
BspPI	GGATC	1 cut(s)	228
BssECI	CCNNGG	3 cut(s)	21, 33, 401
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	3 cut(s)	22, 35, 271
BstACI	GRCGYC	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstNI	CCWGG	3 cut(s)	22, 35, 271
BstSCI	CCNGG	5 cut(s)	20, 33, 269, 302, 327
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	124, 320
Csp6I	GTAC	2 cut(s)	196, 348
CviJI	RGCY	8 cut(s)	9, 51, 71, 116, 139, 207, 274, 385
CviKI_1	RGCY	8 cut(s)	9, 51, 71, 116, 139, 207, 274, 385
CviQI	GTAC	2 cut(s)	196, 348
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	124, 320
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	3 cut(s)	20, 33, 269
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaiI	YATR	1 cut(s)	168
FaqI	GGGAC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	275
HapII	CCGG	2 cut(s)	303, 329
Hin1I	GRCGYC	1 cut(s)	87
HindIII	AAGCTT	2 cut(s)	114, 383
HinfI	GANTC	3 cut(s)	143, 214, 367
HpaII	CCGG	2 cut(s)	303, 329
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	3 cut(s)	46, 218, 293
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	261
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	46, 92
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	3 cut(s)	311, 361, 413
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	138, 221
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	3 cut(s)	108, 240, 427
MspI	CCGG	2 cut(s)	303, 329
MspR9I	CCNGG	5 cut(s)	22, 35, 271, 304, 329
MvaI	CCWGG	3 cut(s)	22, 35, 271
NciI	CCSGG	2 cut(s)	304, 329
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	126, 321
PaeR7I	CTCGAG	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	214, 367
PflFI	GACNNNGTC	1 cut(s)	86
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	20, 33, 269
PspGI	CCWGG	3 cut(s)	20, 33, 269
PspN4I	GGNNCC	2 cut(s)	126, 321
PspPI	GGNCC	2 cut(s)	124, 320
PspPPI	RGGWCCY	1 cut(s)	124
PspXI	VCTCGAGB	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	197, 349
RsaNI	GTAC	2 cut(s)	196, 348
SaqAI	TTAA	3 cut(s)	108, 240, 427
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	124, 320
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	5 cut(s)	22, 35, 271, 304, 329
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	124, 320
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	46, 140
SmoI	CTYRAG	2 cut(s)	46, 140
Sse9I	AATT	3 cut(s)	311, 361, 413
StyD4I	CCNGG	5 cut(s)	20, 33, 269, 302, 327
StyI	CCWWGG	1 cut(s)	401
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	141, 188
TasI	AATT	3 cut(s)	311, 361, 413
TatI	WGTACW	2 cut(s)	195, 347
TfiI	GAWTC	2 cut(s)	214, 367
Tru1I	TTAA	3 cut(s)	108, 240, 427
Tru9I	TTAA	3 cut(s)	108, 240, 427
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	124, 320
XapI	RAATTY	2 cut(s)	311, 413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	88
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.