Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0018799

Physical Location & Seq

Genomic Coordinates Forward (+)

13340456 .. 13340974

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTCAGCTCAACTCCCACCTGGGTTCTCACCTTGGTCTTGTTCTTGAGCTTCTTCTCATCCTACCAAGCTGTTGTGGAAGACGACTTCAAGTGCCTTCAGGGGATTAAAGAAGCTTTCAAGGACCCTCTTGGGAAGCTCGAGTCTTGGGACTTCTCCAACTCCTCTGTGGGCTTCGTCTGCCACTTTGTGGATGTTTCTTGCTGGAACGATCGCGAGAATCGAATCTACAATCTCGAGCTCAGGGACATGTCTCTATCAAGTACGATTCCCCAGTCGATTGAGTACTGCATTAGCTTGACGAATCTGGATCTTGGAGGGAATGACCTTAATAGACAGATACCTAAAGATTTGTGTTCCTGGTTGCCGTATTTGGTTACTCTTGATTTGTCCGGGAATGAAATCACGGGTCCAATCCCAGTTGATTTGAGTAACTGTACTCTCTTGAATAATTTGATTCTTTCAGATAATAAGCTTTCGGGGAGTATTCCTTGGAGTTGTGAATTTGGTGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.33

Weight (kDa)

4.26

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 69	1e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	99 - 159	6.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica	MD13G1271100.v1.1
prunus_persica	Prupe.4G279200_v2.0.a1
pyrus_communis	pycom17g03900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccII	CGCG	1 cut(s)	216
AclWI	GGATC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	190
AfaI	GTAC	3 cut(s)	265, 287, 439
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	91, 121, 448
AjnI	CCWGG	2 cut(s)	20, 359
AluBI	AGCT	8 cut(s)	9, 51, 71, 116, 139, 241, 297, 475
AluI	AGCT	8 cut(s)	9, 51, 71, 116, 139, 241, 297, 475
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	2 cut(s)	140, 236
ApoI	RAATTY	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	124, 410
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	2 cut(s)	140, 236
AvaII	GGWCC	2 cut(s)	124, 410
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	2 cut(s)	22, 361
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	258
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	3 cut(s)	22, 361, 394
Bme18I	GGWCC	2 cut(s)	124, 410
BmeT110I	CYCGRG	2 cut(s)	140, 236
BmgT120I	GGNCC	2 cut(s)	124, 410
BmiI	GGNNCC	2 cut(s)	126, 411
BmrFI	CCNGG	3 cut(s)	22, 361, 394
BmrI	ACTGGG	2 cut(s)	268, 413
BmuI	ACTGGG	2 cut(s)	268, 413
BpiI	GAAGAC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	394
BsaJI	CCNNGG	3 cut(s)	21, 33, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	274, 419
BseBI	CCWGG	2 cut(s)	22, 361
BseDI	CCNNGG	3 cut(s)	21, 33, 491
BseGI	GGATG	2 cut(s)	59, 199
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	274, 419
BseRI	GAGGAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	2 cut(s)	140, 236
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	164, 260
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	164, 260
BsoBI	CYCGRG	2 cut(s)	140, 236
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	211, 310
Bsp68I	TCGCGA	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	126, 411
BspPI	GGATC	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	274, 419
BssECI	CCNNGG	3 cut(s)	21, 33, 491
BssMI	GATC	2 cut(s)	211, 310
BssT1I	CCWWGG	2 cut(s)	33, 491
Bst2UI	CCWGG	2 cut(s)	22, 361
Bst4CI	ACNGT	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	59, 199
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	214, 313
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	211, 310
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	2 cut(s)	22, 361
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	3 cut(s)	20, 359, 392
BstUI	CGCG	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	59, 199
BtuMI	TCGCGA	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	124, 410
Csp6I	GTAC	3 cut(s)	264, 286, 438
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	9 cut(s)	9, 51, 71, 116, 139, 174, 241, 297, 475
CviKI_1	RGCY	9 cut(s)	9, 51, 71, 116, 139, 174, 241, 297, 475
CviQI	GTAC	3 cut(s)	264, 286, 438
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	213, 312
DpnII	GATC	2 cut(s)	211, 310
DraIII	CACNNNGTG	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	33, 491
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	124, 410
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	2 cut(s)	140, 236
EcoICRI	GAGCTC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	20, 359
EcoT14I	CCWWGG	2 cut(s)	33, 491
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	33, 491
FaeI	CATG	1 cut(s)	253
FaiI	YATR	1 cut(s)	251
FaqI	GGGAC	2 cut(s)	164, 260
FatI	CATG	1 cut(s)	249
FokI	GGATG	2 cut(s)	46, 206
FriOI	GRGCYC	1 cut(s)	243
HapII	CCGG	1 cut(s)	393
Hin1II	CATG	1 cut(s)	253
HindIII	AAGCTT	2 cut(s)	114, 473
HinfI	GANTC	6 cut(s)	143, 220, 225, 268, 304, 457
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	6 cut(s)	46, 215, 236, 308, 383, 445
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	211, 310
MaeIII	GTNAC	2 cut(s)	376, 431
MalI	GATC	2 cut(s)	213, 312
MboI	GATC	2 cut(s)	211, 310
MboII	GAAGA	2 cut(s)	46, 92
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	451, 503
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	138, 175, 311
MseI	TTAA	3 cut(s)	108, 330, 517
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	3 cut(s)	22, 361, 394
MvaI	CCWGG	2 cut(s)	22, 361
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	211, 310
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	126, 411
NruI	TCGCGA	1 cut(s)	216
NspI	RCATGY	1 cut(s)	253
PaeR7I	CTCGAG	2 cut(s)	140, 236
PciI	ACATGT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PfeI	GAWTC	5 cut(s)	220, 225, 268, 304, 457
PflMI	CCANNNNNTGG	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	392
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	124
PscI	ACATGT	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	20, 359
PspGI	CCWGG	2 cut(s)	20, 359
PspN4I	GGNNCC	2 cut(s)	126, 411
PspPI	GGNCC	2 cut(s)	124, 410
PspPPI	RGGWCCY	1 cut(s)	124
PspXI	VCTCGAGB	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	310
PvuI	CGATCG	1 cut(s)	214
RruI	TCGCGA	1 cut(s)	216
RsaI	GTAC	3 cut(s)	265, 287, 439
RsaNI	GTAC	3 cut(s)	264, 286, 438
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	108, 330, 517
Sau3AI	GATC	2 cut(s)	211, 310
Sau96I	GGNCC	2 cut(s)	124, 410
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	22, 361, 394
SduI	GDGCHC	1 cut(s)	243
Sfr274I	CTCGAG	2 cut(s)	140, 236
SinI	GGWCC	2 cut(s)	124, 410
SlaI	CTCGAG	2 cut(s)	140, 236
SmlI	CTYRAG	3 cut(s)	46, 140, 236
SmoI	CTYRAG	3 cut(s)	46, 140, 236
Sse9I	AATT	2 cut(s)	451, 503
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	20, 359, 392
StyI	CCWWGG	2 cut(s)	33, 491
TaaI	ACNGT	1 cut(s)	437
TaqI	TCGA	4 cut(s)	141, 223, 237, 278
TasI	AATT	2 cut(s)	451, 503
TatI	WGTACW	2 cut(s)	285, 437
TfiI	GAWTC	5 cut(s)	220, 225, 268, 304, 457
Tru1I	TTAA	3 cut(s)	108, 330, 517
Tru9I	TTAA	3 cut(s)	108, 330, 517
TspDTI	ATGAA	1 cut(s)	414
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	124, 410
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XhoI	CTCGAG	2 cut(s)	140, 236
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.