Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0018799

Physical Location & Seq

Genomic Coordinates Forward (+)

23551652 .. 23562166

Gene Structure 10515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G279200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCTAGCGTAACTGTTAGGATATGGATTGCCATATTGTTCTTGAGCTGTGCTTGTTATTGTTCTTATGGGGCTGTGGTTGAGGACGATGTGAAGTGTCTTCAGAGCCTTAAGCAATCTCTGAAAGACCCACTTGGAAAGCTGGTCTCTTGGGATTTCAGGAACACGTCTGTGGTTTCCATGTGCAAGTTTGTGGGAGTTACCTGCTGGAACGATCGAGAGAACCGCATATTAAACCTTGAGCTCAGAGACATGGAGCTTTCTGGTGCTATTGCGAAGGACATAGAGTACTGTTCTAGCCTTCAGAATCTGGATCTTGGAGGCAACAAGCTTTCTGGGTCGATCCCTCCTGATATTTGTACTTGGTTGCCGTTTTTGGTGACCTTGGACTTTTCCAACAATGATTTCTCAGGCTCAATCCCAACTGATCTGCAGACCGAGAGGTTTACTCTGCGGCCAAGGCGGTCGGGTTCGGTGACGTCGACTTGGTGGCGGCCGAGACCGGTTGGCCTTCGTCTTGCGAGTTCTCTGTCTGCTCGGTTCAGAACAGCCGTGGAATTCCAAGAACCAGCTCTGGTTGGCTTTGGAATCTGGTTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

201

Amino Acids

22.45

Weight (kDa)

7.45

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica	MD13G1271100.v1.1
prunus_persica	Prupe.4G279200_v2.0.a1
pyrus_communis	pycom17g03900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	482
AciI	CCGC	4 cut(s)	226, 454, 463, 493
AclWI	GGATC	2 cut(s)	321, 337
AcoI	YGGCCR	2 cut(s)	455, 494
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	2 cut(s)	86, 287
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	2 cut(s)	290, 361
AflII	CTTAAG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	165
AgeI	ACCGGT	1 cut(s)	502
AjiI	CACGTC	1 cut(s)	168
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	48, 142, 244, 259, 331, 572
AluI	AGCT	6 cut(s)	48, 142, 244, 259, 331, 572
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	151, 243, 493
AlwI	GGATC	2 cut(s)	321, 337
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	3 cut(s)	455, 494, 508
ApoI	RAATTY	1 cut(s)	557
AsiGI	ACCGGT	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	391, 487
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	246
BceAI	ACGGC	2 cut(s)	355, 536
BcoDI	GTCTC	3 cut(s)	151, 243, 493
BfaI	CTAG	2 cut(s)	6, 297
BfmI	CTRYAG	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	455, 494
BlsI	GCNGC	2 cut(s)	456, 495
BmcAI	AGTACT	1 cut(s)	290
BmgBI	CACGTC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpuEI	CTTGAG	2 cut(s)	64, 260
BsaHI	GRCGYC	1 cut(s)	479
BsaI	GGTCTC	2 cut(s)	151, 493
BsaJI	CCNNGG	3 cut(s)	384, 458, 552
BsaWI	WCCGGW	1 cut(s)	502
Bse118I	RCCGGY	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	384, 458, 552
BseMII	CTCAG	2 cut(s)	259, 423
BseX3I	CGGCCG	1 cut(s)	494
Bsh1285I	CGRYCG	3 cut(s)	217, 467, 497
BshFI	GGCC	3 cut(s)	457, 496, 510
BshTI	ACCGGT	1 cut(s)	502
BsiEI	CGRYCG	3 cut(s)	217, 467, 497
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	503
BsmAI	GTCTC	3 cut(s)	151, 243, 493
BsnI	GGCC	3 cut(s)	457, 496, 510
Bso31I	GGTCTC	2 cut(s)	151, 493
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	214, 313, 342, 427
BspACI	CCGC	4 cut(s)	226, 454, 463, 493
BspANI	GGCC	3 cut(s)	457, 496, 510
BspCNI	CTCAG	2 cut(s)	258, 422
BspMAI	CTGCAG	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	321, 337
BspTI	CTTAAG	1 cut(s)	110
BspTNI	GGTCTC	2 cut(s)	151, 493
BsrFI	RCCGGY	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	384, 458, 552
BssMI	GATC	4 cut(s)	214, 313, 342, 427
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	2 cut(s)	384, 458
Bst4CI	ACNGT	2 cut(s)	16, 293
BstACI	GRCGYC	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	245, 409
BstDSI	CCRYGG	1 cut(s)	552
BstEII	GGTNACC	1 cut(s)	379
BstKTI	GATC	4 cut(s)	217, 316, 345, 430
BstMAI	GTCTC	3 cut(s)	151, 243, 493
BstMBI	GATC	4 cut(s)	214, 313, 342, 427
BstMCI	CGRYCG	3 cut(s)	217, 467, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstPI	GGTNACC	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BstZI	CGGCCG	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	457, 496, 510
BtgI	CCRYGG	1 cut(s)	552
BtrI	CACGTC	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	502
Csp6I	GTAC	2 cut(s)	289, 360
CspAI	ACCGGT	1 cut(s)	502
CviAII	CATG	2 cut(s)	181, 253
CviQI	GTAC	2 cut(s)	289, 360
DdeI	CTNAG	2 cut(s)	245, 409
DpnI	GATC	4 cut(s)	216, 315, 344, 429
DpnII	GATC	4 cut(s)	214, 313, 342, 427
EaeI	YGGCCR	2 cut(s)	455, 494
EagI	CGGCCG	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	494
Eco130I	CCWWGG	2 cut(s)	384, 458
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	2 cut(s)	151, 493
Eco52I	CGGCCG	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	86, 287
Eco91I	GGTNACC	1 cut(s)	379
EcoICRI	GAGCTC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	557
EcoT14I	CCWWGG	2 cut(s)	384, 458
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	384, 458
FaeI	CATG	2 cut(s)	184, 256
FaiI	YATR	7 cut(s)	25, 35, 69, 182, 230, 254, 284
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	180, 252
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	2 cut(s)	455, 494
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	455, 494
FspBI	CTAG	2 cut(s)	6, 297
GluI	GCNGC	2 cut(s)	455, 494
HaeIII	GGCC	3 cut(s)	457, 496, 510
HapII	CCGG	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	184, 256
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	307, 588
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	391, 487
Hpy166II	GTNNAC	2 cut(s)	447, 483
Hpy188I	TCNGA	5 cut(s)	105, 123, 248, 306, 545
Hpy188III	TCNNGA	5 cut(s)	43, 160, 218, 311, 350
Hpy8I	GTNNAC	2 cut(s)	447, 483
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	3 cut(s)	271, 311, 521
HpyCH4III	ACNGT	2 cut(s)	16, 293
HpyCH4IV	ACGT	2 cut(s)	167, 479
HpyCH4V	TGCA	2 cut(s)	186, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	2 cut(s)	245, 409
HpySE526I	ACGT	2 cut(s)	167, 479
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	2 cut(s)	184, 256
Kzo9I	GATC	4 cut(s)	214, 313, 342, 427
LmnI	GCTCC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	6, 297
MaeII	ACGT	2 cut(s)	167, 479
MaeIII	GTNAC	4 cut(s)	10, 199, 379, 475
MalI	GATC	4 cut(s)	216, 315, 344, 429
MboI	GATC	4 cut(s)	214, 313, 342, 427
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	4 cut(s)	76, 314, 357, 435
MseI	TTAA	2 cut(s)	111, 233
MslI	CAYNNNNRTG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	110
MspI	CCGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	4 cut(s)	214, 313, 342, 427
NlaIII	CATG	2 cut(s)	184, 256
NmeAIII	GCCGAG	1 cut(s)	522
NmuCI	GTSAC	2 cut(s)	379, 475
OliI	CACNNNNGTG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	307, 588
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	456, 495
Ple19I	CGATCG	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	313
PvuI	CGATCG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	290, 361
RsaNI	GTAC	2 cut(s)	289, 360
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	111, 233
SatI	GCNGC	2 cut(s)	455, 494
Sau3AI	GATC	4 cut(s)	214, 313, 342, 427
ScaI	AGTACT	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	3 cut(s)	43, 110, 239
SmoI	CTYRAG	3 cut(s)	43, 110, 239
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	4 cut(s)	226, 454, 463, 493
SspMI	CTAG	2 cut(s)	6, 297
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	384, 458
TaaI	ACNGT	2 cut(s)	16, 293
TaiI	ACGT	2 cut(s)	170, 482
TaqI	TCGA	3 cut(s)	217, 341, 482
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	557
TatI	WGTACW	2 cut(s)	288, 359
TauI	GCSGC	2 cut(s)	457, 496
TfiI	GAWTC	2 cut(s)	307, 588
Tru1I	TTAA	2 cut(s)	111, 233
Tru9I	TTAA	2 cut(s)	111, 233
TseFI	GTSAC	2 cut(s)	379, 475
Tsp45I	GTSAC	2 cut(s)	379, 475
Vha464I	CTTAAG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	482
XspI	CTAG	2 cut(s)	6, 297
ZraI	GACGTC	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.