Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0018799

Physical Location & Seq

Genomic Coordinates Forward (+)

21517749 .. 21517985

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTTCAGCTCAACTCCCACCTGGATTCTCACCTTGGTCTTGTTCTTGAGCTTCTTCTCATCCTACCAAGCTGTTGTGGAAGACGACGTCAAGTGCCTTCAGGGGATTAAAGAAGCTTTCAAGGACCCTCTTGGGAAGCTCAAGTCTTGGGACTTCTCCAACTCCTCTGTGGTCGTCTGCCACTTTGTGGGTGTTTCTTGCTGGAACGATTGCGAGAATCGAATCTACAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

79

Amino Acids

8.91

Weight (kDa)

5.04

Isoelectric Point (pI)

28.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 68	1.2e-10	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica	MD13G1271100.v1.1
prunus_persica	Prupe.4G279200_v2.0.a1
pyrus_communis	pycom17g03900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	5 cut(s)	9, 51, 71, 116, 139
AluI	AGCT	5 cut(s)	9, 51, 71, 116, 139
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	22
BfaI	CTAG	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	67, 125
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	33
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	124
CviJI	RGCY	5 cut(s)	9, 51, 71, 116, 139
CviKI_1	RGCY	5 cut(s)	9, 51, 71, 116, 139
DraIII	CACNNNGTG	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	164
FokI	GGATG	1 cut(s)	46
FspBI	CTAG	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	3 cut(s)	25, 217, 222
HphI	GGTGA	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
LpnPI	CCDG	4 cut(s)	7, 34, 86, 187
MaeI	CTAG	1 cut(s)	235
MaeII	ACGT	1 cut(s)	87
MboII	GAAGA	2 cut(s)	46, 92
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	138, 175
MseI	TTAA	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	25, 217, 222
PflFI	GACNNNGTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	124
PspPPI	RGGWCCY	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	8 cut(s)	11, 23, 35, 53, 73, 90, 118, 141
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	46, 140
SmoI	CTYRAG	2 cut(s)	46, 140
SspMI	CTAG	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	25, 217, 222
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
Tth111I	GACNNNGTC	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XspI	CTAG	1 cut(s)	235
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.