Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0018799

Physical Location & Seq

Genomic Coordinates Forward (+)

36078336 .. 36079058

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1271100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATTCCCGCATCGCCAGGATTTGGATTTTGGTATTGTTATGGGGCTGTATAAACACCCATTTCGGCTCTTACGCCGCCGTGGTCGAAGACGACGTGAGGTGTGTTCAGAGGCTGAAGCAGTTGCTGAATGACCCGCTCAGAAAGCTGGCGTCTAGGGATTTCAGGGACCACACCGTCGGATTCATCTGCGATTTCGTTAGCATCACCTGCTGGAACAATCGAGAAAATCAGATCTTTAGTTTGGAGCTCCAAGACATGGAGATCACCGGCGAGGTCCCAAAGGATATCGAGTACTGCGCCAGCCTCACGAAGCTGGATCTTGGCAGAAATGAGATTTTCGAGCCGATTCCCCCGGATATTTACAATTGGTTGTTGTTTTTTGTGACCCTCGATTTGTCCGGGCACGACTTCTCCGGCGTGATCCCGCGGGACCTGCAGCACTATGAGTATCTGAACGTTCTGATCCTTTCGGACAACAAGCTTTCGGGTTCGATTCCCTATGAATTTTCTAGCTTGGGTAGGCTTAAGACGTTTTCAGTGGCGAATAATAAGTTGAAGGGGTCTATCCCTTCGTTTTTCGACGGGTTTGATAAGGTAGATTTTGCCGGGAACAGCGGGCTTTGCGGCGGGCCTCTCGAGTTGAAGTGTGGTGGTTTGAGCAAGAAATCAACAGGGTCGAGAATGGTGACGGCGATTGGAATCGGAATGGGGTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

26.94

Weight (kDa)

5.55

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica	MD13G1271100.v1.1
prunus_persica	Prupe.4G279200_v2.0.a1
pyrus_communis	pycom17g03900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
AasI	GACNNNNNNGTC	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	218, 444
AccB7I	CCANNNNNTGG	2 cut(s)	24, 259
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	430
AciI	CCGC	8 cut(s)	10, 78, 137, 428, 430, 618, 627, 630
AclI	AACGTT	1 cut(s)	459
AclWI	GGATC	3 cut(s)	327, 418, 460
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	24, 259
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	559, 646
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	5 cut(s)	148, 250, 316, 484, 516
AluI	AGCT	5 cut(s)	148, 250, 316, 484, 516
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	3 cut(s)	327, 418, 460
AlwNI	CAGNNNCTG	2 cut(s)	115, 127
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	4 cut(s)	169, 277, 433, 632
AsuC2I	CCSGG	3 cut(s)	356, 403, 610
AsuHPI	GGTGA	3 cut(s)	199, 259, 700
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	3 cut(s)	169, 277, 433
BaeGI	GKGCMC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	451
BceAI	ACGGC	2 cut(s)	65, 708
BciT130I	CCWGG	1 cut(s)	19
BcnI	CCSGG	3 cut(s)	356, 403, 610
BfaI	CTAG	2 cut(s)	156, 513
BfmI	CTRYAG	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	2 cut(s)	218, 444
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	3 cut(s)	78, 440, 628
BlsI	GCNGC	3 cut(s)	79, 441, 629
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	4 cut(s)	19, 356, 403, 610
Bme18I	GGWCC	3 cut(s)	169, 277, 433
BmeT110I	CYCGRG	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	4 cut(s)	169, 277, 433, 632
BmiI	GGNNCC	3 cut(s)	170, 279, 434
BmrFI	CCNGG	4 cut(s)	19, 356, 403, 610
BmsI	GCATC	2 cut(s)	21, 213
BpiI	GAAGAC	1 cut(s)	96
BpuMI	CCSGG	3 cut(s)	356, 403, 610
BsaBI	GATNNNNATC	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	81, 354, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 259
Bse118I	RCCGGY	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	701
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	81, 354, 428
BseJI	GATNNNNATC	1 cut(s)	701
BseLI	CCNNNNNNNGG	2 cut(s)	24, 259
BseMII	CTCAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	5 cut(s)	270, 356, 402, 417, 609
BslFI	GGGAC	3 cut(s)	182, 263, 446
BslI	CCNNNNNNNGG	2 cut(s)	24, 259
BsmFI	GGGAC	3 cut(s)	182, 263, 446
BsnI	GGCC	1 cut(s)	634
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	2 cut(s)	252, 408
Bsp143I	GATC	5 cut(s)	234, 264, 319, 423, 465
BspACI	CCGC	8 cut(s)	10, 78, 137, 428, 430, 618, 627, 630
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	170, 279, 434
BspMAI	CTGCAG	1 cut(s)	441
BspMI	ACCTGC	2 cut(s)	218, 444
BspPI	GGATC	3 cut(s)	327, 418, 460
BspTI	CTTAAG	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	81, 354, 428
BssMI	GATC	5 cut(s)	234, 264, 319, 423, 465
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstC8I	GCNNGC	4 cut(s)	150, 304, 620, 632
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	2 cut(s)	81, 428
BstFNI	CGCG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	5 cut(s)	237, 267, 322, 426, 468
BstMBI	GATC	5 cut(s)	234, 264, 319, 423, 465
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 210, 436, 624
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	4 cut(s)	17, 354, 401, 608
BstSFI	CTRYAG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	234, 319
BstYI	RGATCY	2 cut(s)	234, 319
BsuRI	GGCC	1 cut(s)	634
BtgI	CCRYGG	2 cut(s)	81, 428
BtrI	CACGTC	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	546
BveI	ACCTGC	2 cut(s)	218, 444
Cac8I	GCNNGC	4 cut(s)	150, 304, 620, 632
CaiI	CAGNNNCTG	2 cut(s)	115, 127
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	4 cut(s)	169, 277, 433, 632
Cfr42I	CCGCGG	1 cut(s)	431
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	5 cut(s)	236, 266, 321, 425, 467
DpnII	GATC	5 cut(s)	234, 264, 319, 423, 465
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	169, 277, 433
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	2 cut(s)	277, 433
EcoRII	CCWGG	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	262
FaiI	YATR	5 cut(s)	43, 53, 260, 447, 504
FaqI	GGGAC	3 cut(s)	182, 263, 446
FatI	CATG	1 cut(s)	258
FauI	CCCGC	6 cut(s)	17, 144, 423, 435, 611, 623
Fnu4HI	GCNGC	3 cut(s)	78, 440, 628
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	78, 440, 628
FspBI	CTAG	2 cut(s)	156, 513
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	78, 440, 628
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	5 cut(s)	270, 356, 402, 417, 609
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	5 cut(s)	5, 183, 349, 496, 702
HpaII	CCGG	5 cut(s)	270, 356, 402, 417, 609
HphI	GGTGA	3 cut(s)	199, 259, 700
Hpy188I	TCNGA	8 cut(s)	111, 143, 182, 234, 456, 465, 475, 707
Hpy188III	TCNNGA	4 cut(s)	224, 310, 638, 681
Hpy99I	CGWCG	3 cut(s)	98, 182, 587
HpyAV	CCTTC	2 cut(s)	553, 582
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	3 cut(s)	96, 459, 533
HpyCH4V	TGCA	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 210, 436, 624
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	3 cut(s)	96, 459, 533
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	300
KspI	CCGCGG	1 cut(s)	431
Kzo9I	GATC	5 cut(s)	234, 264, 319, 423, 465
LmnI	GCTCC	2 cut(s)	247, 255
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	21, 213
MaeI	CTAG	2 cut(s)	156, 513
MaeII	ACGT	3 cut(s)	96, 459, 533
MaeIII	GTNAC	2 cut(s)	385, 688
MalI	GATC	5 cut(s)	236, 266, 321, 425, 467
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	5 cut(s)	234, 264, 319, 423, 465
MboII	GAAGA	1 cut(s)	101
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	2 cut(s)	234, 319
MhlI	GDGCHC	2 cut(s)	252, 408
MluCI	AATT	2 cut(s)	367, 506
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	6 cut(s)	93, 105, 268, 317, 401, 645
MseI	TTAA	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	430, 618
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	5 cut(s)	270, 356, 402, 417, 609
MspR9I	CCNGG	4 cut(s)	19, 356, 403, 610
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	4 cut(s)	145, 210, 436, 624
NciI	CCSGG	3 cut(s)	356, 403, 610
NdeII	GATC	5 cut(s)	234, 264, 319, 423, 465
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	3 cut(s)	170, 279, 434
NmuCI	GTSAC	2 cut(s)	385, 688
PaeR7I	CTCGAG	1 cut(s)	638
PaqCI	CACCTGC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	5 cut(s)	5, 183, 349, 496, 702
PflMI	CCANNNNNTGG	2 cut(s)	24, 259
PkrI	GCNGC	3 cut(s)	79, 441, 629
PpuMI	RGGWCCY	2 cut(s)	277, 433
Psp124BI	GAGCTC	1 cut(s)	252
Psp1406I	AACGTT	1 cut(s)	459
Psp5II	RGGWCCY	2 cut(s)	277, 433
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	170, 279, 434
PspPI	GGNCC	4 cut(s)	169, 277, 433, 632
PspPPI	RGGWCCY	2 cut(s)	277, 433
PstI	CTGCAG	1 cut(s)	441
PstNI	CAGNNNCTG	2 cut(s)	115, 127
PsuI	RGATCY	2 cut(s)	234, 319
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	252
SacII	CCGCGG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	3 cut(s)	78, 440, 628
Sau3AI	GATC	5 cut(s)	234, 264, 319, 423, 465
Sau96I	GGNCC	4 cut(s)	169, 277, 433, 632
ScaI	AGTACT	1 cut(s)	296
ScrFI	CCNGG	4 cut(s)	19, 356, 403, 610
SduI	GDGCHC	2 cut(s)	252, 408
SfaNI	GCATC	2 cut(s)	21, 213
SfcI	CTRYAG	1 cut(s)	437
Sfr274I	CTCGAG	1 cut(s)	638
Sfr303I	CCGCGG	1 cut(s)	431
SgrAI	CRCCGGYG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	431
SinI	GGWCC	3 cut(s)	169, 277, 433
SlaI	CTCGAG	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	527, 638
SmoI	CTYRAG	2 cut(s)	527, 638
Sse9I	AATT	2 cut(s)	367, 506
SsiI	CCGC	8 cut(s)	10, 78, 137, 428, 430, 618, 627, 630
SspMI	CTAG	2 cut(s)	156, 513
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	17, 354, 401, 608
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	3 cut(s)	99, 462, 536
TaqI	TCGA	9 cut(s)	87, 223, 291, 342, 393, 494, 582, 639, 680
TasI	AATT	2 cut(s)	367, 506
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	2 cut(s)	80, 630
TfiI	GAWTC	5 cut(s)	5, 183, 349, 496, 702
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	2 cut(s)	385, 688
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	2 cut(s)	385, 688
TspDTI	ATGAA	3 cut(s)	175, 519, 707
TspRI	CASTG	1 cut(s)	546
Van91I	CCANNNNNTGG	2 cut(s)	24, 259
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	169, 277, 433
XapI	RAATTY	1 cut(s)	506
XhoI	CTCGAG	1 cut(s)	638
XspI	CTAG	2 cut(s)	156, 513
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.