FvH4_3g40760
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018799
Physical Location & Seq
Forward (+)
34301734 .. 34302249
516 bp
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UTR
Exon/CDS
Intron
FvH4_3g40760.t1

Sequence Viewer

Length: 429 bp
ATGTTCAGCTCAACTCCCACCTGGGTTCTCACCCTGGTCTTGTTCTTGAGCTTCTTCTCATCCTACCAAGCTGTTGTGGAAGACGACGTCAAGTGCCTTCAGGGGATTAAAGAAGCTTTCAAGGACCCTCTTGGGAAGCTCGAGTCTTGGGACTTCTCCAACTCCTCTGTGGTCGTCTGCCACTTTTCGATTGAGTACTGCATTAGCTTGACGAATTTGGATCTTGGAGGGAATGACCTTAATGGACATATACCTAAAGATTTGTGTTCCTGGTTGCCGTATTTGGTTACTCTTGATTTGTCCGGGAATGAATTCACGGGTCCAATCTCGGTTGATTTGAGTAACTATACTTACTTGAATAATTTGATTCTTTCGGATAATAAGCTTTCAGGGAGTATTCCTTGGAGTTGTGAATTTGGTGGGTATTAA

Protein Analysis

143

Amino Acids

15.78

Weight (kDa)

4.21

Isoelectric Point (pI)

23.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 27 - 62 2.3e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018799)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica MD13G1271100.v1.1
prunus_persica Prupe.4G279200_v2.0.a1
pyrus_communis pycom17g03900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AclWI GGATC 1 cut(s) 228
AcsI RAATTY 3 cut(s) 214, 311, 413
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 2 cut(s) 121, 358
AjnI CCWGG 3 cut(s) 20, 33, 269
AluBI AGCT 7 cut(s) 9, 51, 71, 116, 139, 207, 385
AluI AGCT 7 cut(s) 9, 51, 71, 116, 139, 207, 385
AlwI GGATC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 140
ApoI RAATTY 3 cut(s) 214, 311, 413
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 124, 320
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 2 cut(s) 124, 320
BbsI GAAGAC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 3 cut(s) 22, 35, 271
BcnI CCSGG 1 cut(s) 304
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 4 cut(s) 22, 35, 271, 304
Bme18I GGWCC 2 cut(s) 124, 320
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 124, 320
BmiI GGNNCC 2 cut(s) 126, 321
BmrFI CCNGG 4 cut(s) 22, 35, 271, 304
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 21, 33, 401
BseBI CCWGG 3 cut(s) 22, 35, 271
BseDI CCNNGG 3 cut(s) 21, 33, 401
BseGI GGATG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 126, 321
BspPI GGATC 1 cut(s) 228
BssECI CCNNGG 3 cut(s) 21, 33, 401
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 22, 35, 271
BstACI GRCGYC 1 cut(s) 87
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstNI CCWGG 3 cut(s) 22, 35, 271
BstSCI CCNGG 4 cut(s) 20, 33, 269, 302
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BtsCI GGATG 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 124, 320
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 7 cut(s) 9, 51, 71, 116, 139, 207, 385
CviKI_1 RGCY 7 cut(s) 9, 51, 71, 116, 139, 207, 385
CviQI GTAC 1 cut(s) 196
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 124, 320
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 3 cut(s) 20, 33, 269
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaiI YATR 3 cut(s) 249, 251, 348
FaqI GGGAC 1 cut(s) 164
FokI GGATG 1 cut(s) 46
HapII CCGG 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 87
HindIII AAGCTT 2 cut(s) 114, 383
HinfI GANTC 2 cut(s) 143, 367
HpaII CCGG 1 cut(s) 303
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 46, 293
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 9 cut(s) 7, 20, 34, 47, 86, 256, 283, 316, 375
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 286, 341
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 46, 92
MflI RGATCY 1 cut(s) 220
MluCI AATT 4 cut(s) 214, 311, 361, 413
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 3 cut(s) 138, 175, 221
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 3 cut(s) 108, 240, 427
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 4 cut(s) 22, 35, 271, 304
MvaI CCWGG 3 cut(s) 22, 35, 271
NciI CCSGG 1 cut(s) 304
NdeII GATC 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 126, 321
PaeR7I CTCGAG 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 367
PflFI GACNNNGTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 302
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 3 cut(s) 20, 33, 269
PspGI CCWGG 3 cut(s) 20, 33, 269
PspN4I GGNNCC 2 cut(s) 126, 321
PspPI GGNCC 2 cut(s) 124, 320
PspPPI RGGWCCY 1 cut(s) 124
PspXI VCTCGAGB 1 cut(s) 140
PsuI RGATCY 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 3 cut(s) 108, 240, 427
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 124, 320
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 4 cut(s) 22, 35, 271, 304
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 2 cut(s) 124, 320
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 46, 140
SmoI CTYRAG 2 cut(s) 46, 140
Sse9I AATT 4 cut(s) 214, 311, 361, 413
StyD4I CCNGG 4 cut(s) 20, 33, 269, 302
StyI CCWWGG 1 cut(s) 401
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 141, 188
TasI AATT 4 cut(s) 214, 311, 361, 413
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 108, 240, 427
Tru9I TTAA 3 cut(s) 108, 240, 427
TspDTI ATGAA 1 cut(s) 324
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 124, 320
XapI RAATTY 3 cut(s) 214, 311, 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 311
ZraI GACGTC 1 cut(s) 88
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.