Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0018799

Physical Location & Seq

Genomic Coordinates Forward (+)

25259468 .. 25261037

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGCCGATAATGTCAAGAGTTTATCCGATGTGCAAGGTGAATGGCGTGCAATTTATATGCGAACAAAAAGAGACAGCAGAAGGAGACCACAGAATTCTGGGGTCATGGCACATGGTGGGCGGAATGGAGTTGACTATTACGGTGTTCTCCATTCAGTGCTCAACTCCCACCTGGGTTCTCACCCTGGTCTTGTTCTTGAGCTTCTTCTCATCCTACCAAGCTGTTGTGGAAGACGACGTCAAGTGCCTTCAGGGGATTAAAGAAGCTTTCAAGGACCCTCTTGGGAAGCTCGAGTCTTGGGACTTCTCCAACTCCTCTGTGGTCGTCTGCCACTTTGTGGGTGTTTCTTGCTGGAACGATTGCGAGAATCGAATCTACAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

5.25

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	78 - 119	2.6e-10	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica	MD13G1271100.v1.1
prunus_persica	Prupe.4G279200_v2.0.a1
pyrus_communis	pycom17g03900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	340
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	240
AdeI	CACNNNGTG	2 cut(s)	118, 340
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	173, 186
AluBI	AGCT	4 cut(s)	204, 224, 269, 292
AluI	AGCT	4 cut(s)	204, 224, 269, 292
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	2 cut(s)	68, 81
Ama87I	CYCGRG	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	52, 175
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	175, 188
BcoDI	GTCTC	2 cut(s)	68, 81
BfaI	CTAG	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	175, 188
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	175, 188
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	174, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	175, 188
BseDI	CCNNGG	2 cut(s)	174, 186
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	68, 81
BsmFI	GGGAC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	174, 186
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	175, 188
Bst4CI	ACNGT	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	212
BstMAI	GTCTC	2 cut(s)	68, 81
BstNI	CCWGG	2 cut(s)	175, 188
BstSCI	CCNGG	2 cut(s)	173, 186
BstV2I	GAAGAC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	2 cut(s)	108, 115
CviJI	RGCY	5 cut(s)	7, 204, 224, 269, 292
CviKI_1	RGCY	5 cut(s)	7, 204, 224, 269, 292
DraIII	CACNNNGTG	2 cut(s)	118, 340
EciI	GGCGGA	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	173, 186
FaeI	CATG	2 cut(s)	111, 118
FaiI	YATR	4 cut(s)	59, 61, 109, 116
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	107, 114
FokI	GGATG	1 cut(s)	199
FspBI	CTAG	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	111, 118
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	3 cut(s)	296, 370, 375
HphI	GGTGA	2 cut(s)	52, 175
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	18, 199
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	77, 260
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	2 cut(s)	36, 52
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	111, 118
LpnPI	CCDG	7 cut(s)	86, 160, 173, 187, 200, 239, 340
MaeI	CTAG	1 cut(s)	388
MaeII	ACGT	1 cut(s)	240
MboII	GAAGA	2 cut(s)	199, 245
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	2 cut(s)	53, 96
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	2 cut(s)	291, 328
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	175, 188
MvaI	CCWGG	2 cut(s)	175, 188
NlaIII	CATG	2 cut(s)	111, 118
NlaIV	GGNNCC	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	370, 375
PflFI	GACNNNGTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	340
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	173, 186
PspGI	CCWGG	2 cut(s)	173, 186
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	175, 188
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	7 cut(s)	42, 176, 206, 226, 243, 271, 294
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	199, 293
SmoI	CTYRAG	2 cut(s)	199, 293
Sse9I	AATT	2 cut(s)	53, 96
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	173, 186
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	294, 373
TasI	AATT	2 cut(s)	53, 96
TfiI	GAWTC	2 cut(s)	370, 375
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	164
Tth111I	GACNNNGTC	1 cut(s)	239
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	1 cut(s)	388
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.