Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0018799

Physical Location & Seq

Genomic Coordinates Forward (+)

21517995 .. 21521941

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTCTATCAGGTACGATTCCCCAGTCGATTGAGTACTGCATTAGCTTGACGAATCTGGATCTTGGAGGGAATGACCTTAATGGACAGATACCTAAAGAGTTGTGTTCCTGGTTGTCGTATTTGGTTACTCTTGATTTGTCCGGGAATGAATTCACGGGTCCAATCCCGGTTGATTTGAGTAACTGTACTTACTTGAATAATTTGATTCTTTCGGATAATAAGCTTTCAAGGAGTATTCCTTGGAGTTGTGAATTTGGTGGGCTACATTGTGTTGAATCAATCATGGCAATTAAACAGAAGATAGGGTCGGACAAGCCGTTTCTTGATATCAGAATTCCAGCCAAAACCTTGTCCTTTAGTGTGGTACTGACTTTGAGCTCTCTACATCGACTAACTTTGCAAATGAACTCTACACAGCTGGGTCTGAATGGAGAGCTCTCAGGATGCATGATCCTTGATTGGCTCAATTCACCTGTTGGAGTTGCCTTTCTCAGGATTGTATATATGGATTATTTGATAGAGTTTGCATTCATTGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

182

Amino Acids

19.97

Weight (kDa)

4.69

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22700 FvH4_3g20310 FvH4_3g31310 FvH4_3g40760 FvH4_5g30630 FvH4_5g30640
malus_domestica	MD13G1271100.v1.1
prunus_persica	Prupe.4G279200_v2.0.a1
pyrus_communis	pycom17g03900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	69, 448
AcsI	RAATTY	3 cut(s)	152, 254, 336
AfaI	GTAC	4 cut(s)	16, 38, 190, 369
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	199, 231, 278
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	5 cut(s)	48, 226, 381, 421, 439
AluI	AGCT	5 cut(s)	48, 226, 381, 421, 439
Alw21I	GWGCWC	2 cut(s)	383, 441
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	69, 448
ApoI	RAATTY	3 cut(s)	152, 254, 336
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	145, 170
AsuHPI	GGTGA	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	383, 441
Bbv12I	GWGCWC	2 cut(s)	383, 441
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	145, 170
BcoDI	GTCTC	1 cut(s)	9
BmcAI	AGTACT	1 cut(s)	38
Bme1390I	CCNGG	3 cut(s)	112, 145, 170
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	3 cut(s)	112, 145, 170
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	437
BmuI	ACTGGG	1 cut(s)	19
BpuMI	CCSGG	2 cut(s)	145, 170
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	452
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	456, 508
BseNI	ACTGG	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	421
BsiHKAI	GWGCWC	2 cut(s)	383, 441
BsiSI	CCGG	2 cut(s)	144, 170
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	383, 441
Bsp143I	GATC	2 cut(s)	61, 453
BspCNI	CTCAG	2 cut(s)	455, 507
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	69, 448
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	61, 453
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	442, 494
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	452
BstKTI	GATC	2 cut(s)	64, 456
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	61, 453
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	3 cut(s)	110, 143, 168
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	4 cut(s)	15, 37, 189, 368
CviAII	CATG	2 cut(s)	286, 451
CviJI	RGCY	9 cut(s)	48, 226, 265, 319, 344, 381, 421, 439, 466
CviKI_1	RGCY	9 cut(s)	48, 226, 265, 319, 344, 381, 421, 439, 466
CviQI	GTAC	4 cut(s)	15, 37, 189, 368
DdeI	CTNAG	2 cut(s)	442, 494
DpnI	GATC	2 cut(s)	63, 455
DpnII	GATC	2 cut(s)	61, 453
Ecl136II	GAGCTC	2 cut(s)	381, 439
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	2 cut(s)	383, 441
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	2 cut(s)	381, 439
EcoICRI	GAGCTC	2 cut(s)	381, 439
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoRI	GAATTC	2 cut(s)	152, 336
EcoRII	CCWGG	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	452
EcoT38I	GRGCYC	2 cut(s)	383, 441
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	289, 454
FaiI	YATR	5 cut(s)	287, 452, 505, 507, 509
FatI	CATG	2 cut(s)	285, 450
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	2 cut(s)	383, 441
GsaI	CCCAGC	1 cut(s)	425
HapII	CCGG	2 cut(s)	144, 170
Hin1II	CATG	2 cut(s)	289, 454
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	4 cut(s)	19, 55, 208, 278
HpaII	CCGG	2 cut(s)	144, 170
HphI	GGTGA	1 cut(s)	465
Hpy188I	TCNGA	4 cut(s)	217, 313, 335, 429
Hpy188III	TCNNGA	5 cut(s)	59, 134, 326, 444, 496
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	42, 403, 450, 530
HpyF3I	CTNAG	2 cut(s)	442, 494
Hsp92II	CATG	2 cut(s)	289, 454
Kzo9I	GATC	2 cut(s)	61, 453
LweI	GCATC	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	127, 182
MalI	GATC	2 cut(s)	63, 455
MboI	GATC	2 cut(s)	61, 453
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	383, 441
MluCI	AATT	6 cut(s)	152, 202, 254, 291, 336, 469
MmeI	TCCRAC	2 cut(s)	291, 460
MnlI	CCTC	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	2 cut(s)	81, 294
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	2 cut(s)	144, 170
MspR9I	CCNGG	3 cut(s)	112, 145, 170
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	112
NciI	CCSGG	2 cut(s)	145, 170
NdeII	GATC	2 cut(s)	61, 453
NlaIII	CATG	2 cut(s)	289, 454
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PctI	GAATGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	4 cut(s)	19, 55, 208, 278
PfoI	TCCNGGA	1 cut(s)	143
Psp124BI	GAGCTC	2 cut(s)	383, 441
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	4 cut(s)	16, 38, 190, 369
RsaNI	GTAC	4 cut(s)	15, 37, 189, 368
SacI	GAGCTC	2 cut(s)	383, 441
SaqAI	TTAA	2 cut(s)	81, 294
Sau3AI	GATC	2 cut(s)	61, 453
Sau96I	GGNCC	1 cut(s)	161
ScaI	AGTACT	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	112, 145, 170
SduI	GDGCHC	2 cut(s)	383, 441
SfaNI	GCATC	1 cut(s)	437
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	6 cut(s)	152, 202, 254, 291, 336, 469
SstI	GAGCTC	2 cut(s)	383, 441
StyD4I	CCNGG	3 cut(s)	110, 143, 168
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	2 cut(s)	29, 391
TasI	AATT	6 cut(s)	152, 202, 254, 291, 336, 469
TatI	WGTACW	2 cut(s)	36, 188
TfiI	GAWTC	4 cut(s)	19, 55, 208, 278
Tru1I	TTAA	2 cut(s)	81, 294
Tru9I	TTAA	2 cut(s)	81, 294
TspDTI	ATGAA	3 cut(s)	165, 422, 523
VpaK11BI	GGWCC	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	3 cut(s)	152, 254, 336
XmnI	GAANNNNTTC	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.