Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016210

Physical Location & Seq

Genomic Coordinates Reverse (-)

18797883 .. 18800753

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGGCTACTTCGTCTCCACACATTTACACCACTTGTCCGTCCACCCAACTCCGACCCATGTTGAACAAACCCCATCTAAACCCAGCTCTCCACTTCTTCAAACTCCCTCAAAACCCCACCAAACTCTTCCCTTCATTGAAGCACGTCTGCGACCAAGGCAGCCTCAACGAAGCTTTCAAATCACTCACCACTCTCCTATCCCAACAACATGCACCTGACCTTTCTCTAGACGCGGCCTACTCGCCGCTCCTGGAGCTCTGCGCAAAGAAGAAGGCTCTACCGGAAGGGCAGCAACTCCATGCACACTTGATCAAGTCCTGCGCCGTATGGGACTCCGCGTTTCTGAGCACCAAGCTTGTTTACATGTACGGCAAATGCGGCGCCGTTTTGGATGCACGGAAGGTGTTTGATAAAATGTCTCACAGAACGGTTTTCACTTGGAACGCTATGATTGGGGCATTTGCGGCAAATGGGGAGCCTTTGATGGCTCTTGATATGTATAATGAAATGCGGGTTTTCGGGGTTAGGGTAGATTCGTTTACTTTTCCTTGCGTGCTGAAAGCGTGCGTTGCTGTTGGTAGTCTCTGTTGTGGGGAGGAGGTTCATGGCTTGGCTGTGAAATGTGGGTTTGATGATGTGGGGTTTGTGGTTAACTCTTTGGTTGCGATGTATGCGAGCTGTAATGAACTCGGTGCAGCGAGGAAGTTGTTTGATGGTGTGGGAGATAAGGAGGATGTTGTGTTGTGGAATTGTATTATTTCGGGGTATTCAGCGAGAGGGATGTCGGATGAAGCGTTGGGATTGTTTCGGGAAATGCAGAAGGTGGGAGTTGCCATGAATACGTATACTTTTGTGGCCGCTCTTCAGGCTTGTGAGGAGTCATTTTGTGGGAAACTCGGTATGGAGATTCATGCTGCTGTGTTAAAGTTGAATTATTGTGTTGATATTTATGTGGTGAATTCTTTGCTTGCTATGTATGTGAGGCGTGGTAAAATGGATGAGGCTGCAAGGATTTTTAGTGACTTGGACGACAAGGATATTGTTTCATGGAATACGTTACTGTCTGGTTTTGTCCAAAATGGACTGTATAAGGAGGCTCTGCTGTTGTTCCATGACATGCAGAGGATTGGTCATAGACCTGACCAGGTTTCGTTGTTGAATATTCTTGCAGCATCTGGTCGGTTAAGAAGTTTAATGTCAGGAACGGAAGCCCATGCTTATGCTATTAAAAATGGATTTGATTATGATTTGCAGGTTGGGAACACACTGATAGATATGTATGCTAAGTGTTCTTGTGTGAACTTGATGGGACGTGCTTTTGAGAAGATGCCAAATAAAGACTTCATTTCTTGGACAACAATTATTGCTGGCTATGCTCAGAACAATTGTCACACAGAGGCCTTAGAACTGTGCCGGAAGGTGCAGATGTTGGGGCTGGAAGTGGATGCAATGATGGTAGAAAGTATTTTATCGGCTTGTGGAGCTTTGAAATGTGTTCCTTTGGTAAAAGAAGTTCATGGTTACGCTATAAGGAGAGGTTTATTTGATCTCGTCTTGCAAAATGCAGTTGTCAATGTATATGGCCAGTGTGGTTACATAGACTACGCATATCGGATATTCAACTTGATTGAATCTAAAGATGTTGTGTCTTTAACAAGCATGATATCTTGTTATGTTCATAATGGGCTTGCAAATGAGGCTCTTGAACTTTGTCACTTCATGAAAGAAACAAATGTTGAACCTGACTCCATAGCGCTTGTAAGTATACTGCCTGCTGCCGCTAGTTTATCTGCTTTAATGAAAGGGAAAGAAATTCATGGTTTTCTTACTAGGAAGGGATTCATCTTGGAGGGATCTGTTGCGAGCTCTCTTGTTGATATGTATGCCCGCTGTGGAACTTTGAAGAATGCATACAACATATATAACTCTGTTAGAAACAAAAATCTAATCTTATGGACTACAATGATCAATGCGTATGGGATGCATGGTCACGGCATGGAAGCCATTGATTTATTCAAGAGGATGCAAGACCAACAGATTGTTCCTGATCATATTACGTTTTTGGCTCTTCTATATGCCTGCAGTCATTCGGGATTGATTGATGAGGGTAAAGGATTATTTGAAATCATGAGACATGAGTATCAATTGGAGCCCTGGCCTGAACATTTTGCTTGCATGGTTGATCTTCTTGGACGTGCCAATCGATTGGAAGAGGCGTATCATTTCGTCAATAGCATGGAGAGTCAACCTACTGCTGAAGTATGGTGTGCTCTTCTTGGGGCTTGTCGTGTTCATTCTAACAAAAAATTTGAAGAAATTGCTGCAAAGAAGATCTTAGAGTTGGGCTCCAAGAATCCAGGAAATTATGTACTTGTGTCGAATGTCTTTGCTGCTAGAGGAAGATGGGAACACGTAGAAGAAGTAAGGATGAAAATGAAGGGAATTGGGTTGAAAAAAAATCCAGGATGTAGTTGGATTGAAGCTGGAAACAAAGTTCATACATTCACGGCTAGGGATAAGTCTCATCCTCAGTCCAATGAAATTTACCAAAAGTTGGCTCAAATTACTGAGACATTAGAGAGGGAAGCAGGCTATGTGGTTCAAACCAAATGTGTGTTGCAGAATGTAGAGGAAGAAGAGAAAGTTCAAATGCTTTATGGACATAGTGAAAGGTTAGCCATTGCATATGGTCTACTTAACATTCCCGAGGGAACCCCTATTCGAATTACAAAAAACCTGCGGGTTTGTATGGATTGCCATACTTTCACTAAACTAATTTCCAAAGTTTTTAGGCGGGTGCTTGTAGTTAGGGATGCTAATAGATTTCATCATTTTAAGGATGGGATATGTTCTTGTGGCGATTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

957

Amino Acids

106.72

Weight (kDa)

7.02

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	143 - 190	2.2e-10	PPR repeat family
PPR	PF01535	145 - 175	5.7e-07	PPR repeat
PPR_2	PF13041	245 - 291	7.2e-12	PPR repeat family
PPR	PF01535	247 - 277	1.2e-07	PPR repeat
PPR_2	PF13041	345 - 384	3.3e-09	PPR repeat family
PPR	PF01535	348 - 377	5.3e-08	PPR repeat
PPR_2	PF13041	546 - 584	1.5e-06	PPR repeat family
PPR_2	PF13041	648 - 695	2.3e-09	PPR repeat family
PPR	PF01535	651 - 678	1.5e-06	PPR repeat
E_motif	PF20431	765 - 827	3.3e-24	E motif
Eplus_motif	PF20430	832 - 856	8.7e-11	E+ motif
DYW_deaminase	PF14432	864 - 956	4.5e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63370 AT3G63370
fragaria_vesca	FvH4_2g22910
malus_domestica	MD11G1278400.v1.1
prunus_persica	Prupe.8G234400_v2.0.a1
pyrus_communis	pycom11g24590
rosa_chinensis	RchiOBHm_Chr6g0289871
rosa_laevigata	RLG00000012263
rosa_multiflora	Rmu_ssc0000314.1_g000006
rosa_rugosa	Rorug06G0207400
rosa_samantha	Rh6AG319000 Rh6BG326000 Rh6CG331900 Rh6DG317400
rosa_wichuraiana	Rw6G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	262
Acc36I	ACCTGC	2 cut(s)	1243, 2745
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	2554
AccBSI	CCGCTC	2 cut(s)	247, 860
AccI	GTMKAC	3 cut(s)	845, 1765, 2692
AccII	CGCG	2 cut(s)	233, 338
AclWI	GGATC	1 cut(s)	1861
AcoI	YGGCCR	2 cut(s)	855, 1582
AcsI	RAATTY	4 cut(s)	958, 1812, 2306, 2541
AcuI	CTGAAG	2 cut(s)	848, 2277
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	2 cut(s)	368, 2370
AfeI	AGCGCT	1 cut(s)	1755
AfiI	CCNNNNNNNGG	1 cut(s)	2554
AflIII	ACRYGT	2 cut(s)	363, 2410
AjiI	CACGTC	3 cut(s)	145, 1313, 2195
AjnI	CCWGG	5 cut(s)	249, 1143, 2153, 2356, 2461
AjuI	GAANNNNNNNTTGG	2 cut(s)	2025, 2057
AloI	GAACNNNNNNTCC	2 cut(s)	2478, 2510
AluBI	AGCT	8 cut(s)	86, 173, 256, 355, 678, 1484, 1866, 2483
AluI	AGCT	8 cut(s)	86, 173, 256, 355, 678, 1484, 1866, 2483
Alw21I	GWGCWC	4 cut(s)	258, 350, 1868, 2272
Alw26I	GTCTC	6 cut(s)	18, 423, 587, 2125, 2526, 2564
AlwI	GGATC	1 cut(s)	1861
AlwNI	CAGNNNCTG	1 cut(s)	1175
Ama87I	CYCGRG	1 cut(s)	2705
Aor51HI	AGCGCT	1 cut(s)	1755
AoxI	GGCC	5 cut(s)	234, 855, 1398, 1582, 2156
ApeKI	GCWGC	9 cut(s)	159, 289, 695, 914, 1004, 1169, 1775, 2321, 2390
ApoI	RAATTY	4 cut(s)	958, 1812, 2306, 2541
Asp700I	GAANNNNTTC	1 cut(s)	1838
AspLEI	GCGC	4 cut(s)	263, 323, 383, 1756
AsuHPI	GGTGA	2 cut(s)	178, 967
AsuII	TTCGAA	1 cut(s)	2722
AvaI	CYCGRG	1 cut(s)	2705
BaeI	ACNNNNGTAYC	2 cut(s)	2123, 2156
BalI	TGGCCA	1 cut(s)	1584
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	4 cut(s)	258, 1868, 2154, 2348
BarI	GAAGNNNNNNTAC	2 cut(s)	1895, 1927
Bbv12I	GWGCWC	4 cut(s)	258, 350, 1868, 2272
BbvI	GCAGC	9 cut(s)	171, 301, 707, 901, 991, 1181, 1762, 2308, 2377
BccI	CCATC	7 cut(s)	81, 478, 707, 1300, 1447, 2397, 2834
BceAI	ACGGC	5 cut(s)	308, 368, 385, 2008, 2523
BciT130I	CCWGG	5 cut(s)	251, 1145, 2155, 2358, 2463
BclI	TGATCA	3 cut(s)	309, 1965, 2047
BcoDI	GTCTC	6 cut(s)	18, 423, 587, 2125, 2526, 2564
BfaI	CTAG	5 cut(s)	227, 1782, 1830, 2394, 2511
BfmI	CTRYAG	1 cut(s)	2080
BfoI	RGCGCY	2 cut(s)	384, 1757
BfuAI	ACCTGC	2 cut(s)	1243, 2745
BglII	AGATCT	1 cut(s)	2331
Bme1390I	CCNGG	5 cut(s)	251, 1145, 2155, 2358, 2463
BmeT110I	CYCGRG	1 cut(s)	2705
BmgBI	CACGTC	3 cut(s)	145, 1313, 2195
BmiI	GGNNCC	5 cut(s)	382, 477, 2151, 2347, 2713
BmrFI	CCNGG	5 cut(s)	251, 1145, 2155, 2358, 2463
BmsI	GCATC	7 cut(s)	382, 1181, 1317, 1435, 1971, 2013, 2803
BplI	GAGNNNNNCTC	2 cut(s)	2330, 2362
BpmI	CTGGAG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	2722
Bsa29I	ATCGAT	1 cut(s)	2203
BsaAI	YACGTR	2 cut(s)	843, 2413
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	154, 2153, 2706
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	2554
Bse1I	ACTGG	1 cut(s)	1585
Bse3DI	GCAATG	2 cut(s)	1455, 2679
BseBI	CCWGG	5 cut(s)	251, 1145, 2155, 2358, 2463
BseCI	ATCGAT	1 cut(s)	2203
BseDI	CCNNGG	3 cut(s)	154, 2153, 2706
BseLI	CCNNNNNNNGG	1 cut(s)	2554
BseMI	GCAATG	2 cut(s)	1455, 2679
BseMII	CTCAG	4 cut(s)	335, 1391, 2543, 2559
BseNI	ACTGG	1 cut(s)	1585
BseRI	GAGGAG	2 cut(s)	611, 890
BseXI	GCAGC	9 cut(s)	171, 301, 707, 901, 991, 1181, 1762, 2308, 2377
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	2 cut(s)	714, 1442
Bsh1236I	CGCG	2 cut(s)	233, 338
BshFI	GGCC	5 cut(s)	236, 857, 1400, 1584, 2158
BshNI	GGYRCC	1 cut(s)	380
BshVI	ATCGAT	1 cut(s)	2203
BsiHKAI	GWGCWC	4 cut(s)	258, 350, 1868, 2272
BsiHKCI	CYCGRG	1 cut(s)	2705
BsiSI	CCGG	2 cut(s)	281, 1414
BslFI	GGGAC	2 cut(s)	344, 1323
BslI	CCNNNNNNNGG	1 cut(s)	2554
BsmAI	GTCTC	6 cut(s)	18, 423, 587, 2125, 2526, 2564
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	2 cut(s)	344, 1323
BsmI	GAATGC	1 cut(s)	1912
BsnI	GGCC	5 cut(s)	236, 857, 1400, 1584, 2158
BsoBI	CYCGRG	1 cut(s)	2705
Bsp119I	TTCGAA	1 cut(s)	2722
Bsp1286I	GDGCHC	6 cut(s)	258, 350, 1868, 2154, 2272, 2348
Bsp143I	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
BspANI	GGCC	5 cut(s)	236, 857, 1400, 1584, 2158
BspCNI	CTCAG	4 cut(s)	336, 1390, 2542, 2560
BspDI	ATCGAT	1 cut(s)	2203
BspFNI	CGCG	2 cut(s)	233, 338
BspHI	TCATGA	2 cut(s)	1719, 2127
BspLI	GGNNCC	5 cut(s)	382, 477, 2151, 2347, 2713
BspMAI	CTGCAG	1 cut(s)	2084
BspMI	ACCTGC	2 cut(s)	1243, 2745
BspPI	GGATC	1 cut(s)	1861
BspQI	GCTCTTC	3 cut(s)	867, 2073, 2277
BspT104I	TTCGAA	1 cut(s)	2722
BspT107I	GGYRCC	1 cut(s)	380
BsrBI	CCGCTC	2 cut(s)	247, 860
BsrDI	GCAATG	2 cut(s)	1455, 2679
BsrI	ACTGG	1 cut(s)	1585
BssECI	CCNNGG	3 cut(s)	154, 2153, 2706
BssMI	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
BssNAI	GTATAC	2 cut(s)	846, 1766
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	154
Bst1107I	GTATAC	2 cut(s)	846, 1766
Bst2UI	CCWGG	5 cut(s)	251, 1145, 2155, 2358, 2463
Bst4CI	ACNGT	4 cut(s)	430, 1062, 1086, 1410
Bst6I	CTCTTC	6 cut(s)	131, 867, 2073, 2205, 2277, 2631
BstACI	GRCGYC	1 cut(s)	381
BstBAI	YACGTR	2 cut(s)	843, 2413
BstBI	TTCGAA	1 cut(s)	2722
BstDEI	CTNAG	7 cut(s)	344, 1284, 1377, 1402, 2335, 2529, 2568
BstFNI	CGCG	2 cut(s)	233, 338
BstH2I	RGCGCY	2 cut(s)	384, 1757
BstHHI	GCGC	4 cut(s)	263, 323, 383, 1756
BstKTI	GATC	7 cut(s)	312, 1549, 1856, 1968, 2050, 2185, 2334
BstMAI	GTCTC	6 cut(s)	18, 423, 587, 2125, 2526, 2564
BstMBI	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
BstNI	CCWGG	5 cut(s)	251, 1145, 2155, 2358, 2463
BstNSI	RCATGY	3 cut(s)	212, 367, 1120
BstSCI	CCNGG	5 cut(s)	249, 1143, 2153, 2356, 2461
BstSFI	CTRYAG	1 cut(s)	2080
BstSNI	TACGTA	1 cut(s)	843
BstUI	CGCG	2 cut(s)	233, 338
BstV1I	GCAGC	9 cut(s)	171, 301, 707, 901, 991, 1181, 1762, 2308, 2377
BstX2I	RGATCY	2 cut(s)	1853, 2331
BstXI	CCANNNNNNTGG	1 cut(s)	2206
BstYI	RGATCY	2 cut(s)	1853, 2331
BstZ17I	GTATAC	2 cut(s)	846, 1766
Bsu15I	ATCGAT	1 cut(s)	2203
BsuRI	GGCC	5 cut(s)	236, 857, 1400, 1584, 2158
BsuTUI	ATCGAT	1 cut(s)	2203
BtgZI	GCGATG	1 cut(s)	680
BtrI	CACGTC	3 cut(s)	145, 1313, 2195
BtsIMutI	CAGTG	2 cut(s)	1265, 1592
BveI	ACCTGC	2 cut(s)	1243, 2745
CaiI	CAGNNNCTG	1 cut(s)	1175
CciI	TCATGA	2 cut(s)	1719, 2127
CfoI	GCGC	4 cut(s)	263, 323, 383, 1756
ClaI	ATCGAT	1 cut(s)	2203
CseI	GACGC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	1143
Csp6I	GTAC	2 cut(s)	367, 2369
CviQI	GTAC	2 cut(s)	367, 2369
DdeI	CTNAG	7 cut(s)	344, 1284, 1377, 1402, 2335, 2529, 2568
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	7 cut(s)	311, 1548, 1855, 1967, 2049, 2184, 2333
DpnII	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
EaeI	YGGCCR	2 cut(s)	855, 1582
Eam1104I	CTCTTC	6 cut(s)	131, 867, 2073, 2205, 2277, 2631
EarI	CTCTTC	6 cut(s)	131, 867, 2073, 2205, 2277, 2631
Ecl136II	GAGCTC	2 cut(s)	256, 1866
Eco105I	TACGTA	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	1400
Eco24I	GRGCYC	4 cut(s)	258, 1868, 2154, 2348
Eco32I	GATATC	1 cut(s)	1665
Eco47III	AGCGCT	1 cut(s)	1755
Eco53kI	GAGCTC	2 cut(s)	256, 1866
Eco57I	CTGAAG	2 cut(s)	848, 2277
Eco88I	CYCGRG	1 cut(s)	2705
EcoICRI	GAGCTC	2 cut(s)	256, 1866
EcoRI	GAATTC	1 cut(s)	958
EcoRII	CCWGG	5 cut(s)	249, 1143, 2153, 2356, 2461
EcoRV	GATATC	1 cut(s)	1665
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	2 cut(s)	1912, 1986
EcoT38I	GRGCYC	4 cut(s)	258, 1868, 2154, 2348
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	18
FalI	AAGNNNNNCTT	2 cut(s)	2318, 2350
FaqI	GGGAC	2 cut(s)	344, 1323
FauI	CCCGC	4 cut(s)	504, 1895, 2733, 2787
FauNDI	CATATG	1 cut(s)	2686
FbaI	TGATCA	3 cut(s)	309, 1965, 2047
FblI	GTMKAC	3 cut(s)	845, 1765, 2692
FriOI	GRGCYC	4 cut(s)	258, 1868, 2154, 2348
FspBI	CTAG	5 cut(s)	227, 1782, 1830, 2394, 2511
FspI	TGCGCA	1 cut(s)	262
GlaI	GCGC	4 cut(s)	262, 322, 382, 1755
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	272
HaeII	RGCGCY	2 cut(s)	384, 1757
HaeIII	GGCC	5 cut(s)	236, 857, 1400, 1584, 2158
HapII	CCGG	2 cut(s)	281, 1414
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	4 cut(s)	263, 323, 383, 1756
Hin1I	GRCGYC	1 cut(s)	381
Hin6I	GCGC	4 cut(s)	261, 321, 381, 1754
HinP1I	GCGC	4 cut(s)	261, 321, 381, 1754
HincII	GTYRAC	2 cut(s)	652, 2246
HindII	GTYRAC	2 cut(s)	652, 2246
HindIII	AAGCTT	2 cut(s)	171, 353
HinfI	GANTC	9 cut(s)	332, 533, 878, 907, 1631, 1745, 1839, 2242, 2353
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	2 cut(s)	281, 1414
HphI	GGTGA	2 cut(s)	178, 967
Hpy166II	GTNNAC	9 cut(s)	42, 361, 540, 652, 846, 1300, 1766, 2246, 2693
Hpy188I	TCNGA	5 cut(s)	53, 345, 787, 1380, 1614
Hpy8I	GTNNAC	9 cut(s)	42, 361, 540, 652, 846, 1300, 1766, 2246, 2693
HpyAV	CCTTC	8 cut(s)	141, 265, 278, 394, 814, 1411, 1828, 2431
HpyCH4III	ACNGT	4 cut(s)	430, 1062, 1086, 1410
HpyCH4IV	ACGT	7 cut(s)	144, 842, 1055, 1312, 2057, 2194, 2412
HpyF3I	CTNAG	7 cut(s)	344, 1284, 1377, 1402, 2335, 2529, 2568
HpySE526I	ACGT	7 cut(s)	144, 842, 1055, 1312, 2057, 2194, 2412
Hsp92I	GRCGYC	1 cut(s)	381
HspAI	GCGC	4 cut(s)	261, 321, 381, 1754
KasI	GGCGCC	1 cut(s)	380
Ksp22I	TGATCA	3 cut(s)	309, 1965, 2047
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
LguI	GCTCTTC	3 cut(s)	867, 2073, 2277
LmnI	GCTCC	6 cut(s)	252, 253, 475, 1481, 2149, 2351
Lsp1109I	GCAGC	9 cut(s)	171, 301, 707, 901, 991, 1181, 1762, 2308, 2377
LweI	GCATC	7 cut(s)	382, 1181, 1317, 1435, 1971, 2013, 2803
MabI	ACCWGGT	1 cut(s)	1143
MaeI	CTAG	5 cut(s)	227, 1782, 1830, 2394, 2511
MaeII	ACGT	7 cut(s)	144, 842, 1055, 1312, 2057, 2194, 2412
MaeIII	GTNAC	7 cut(s)	1019, 1056, 1388, 1520, 1592, 1712, 1988
MalI	GATC	7 cut(s)	311, 1548, 1855, 1967, 2049, 2184, 2333
MbiI	CCGCTC	2 cut(s)	247, 860
MboI	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
MfeI	CAATTG	2 cut(s)	1384, 2144
MflI	RGATCY	2 cut(s)	1853, 2331
MhlI	GDGCHC	6 cut(s)	258, 350, 1868, 2154, 2272, 2348
MlsI	TGGCCA	1 cut(s)	1584
MluNI	TGGCCA	1 cut(s)	1584
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	4 cut(s)	326, 887, 1739, 2251
MmeI	TCCRAC	3 cut(s)	76, 765, 2453
Mox20I	TGGCCA	1 cut(s)	1584
Mph1103I	ATGCAT	2 cut(s)	1912, 1986
MroXI	GAANNNNTTC	1 cut(s)	1838
MscI	TGGCCA	1 cut(s)	1584
MseI	TTAA	9 cut(s)	651, 923, 1184, 1193, 1227, 1652, 1796, 2697, 2835
MslI	CAYNNNNRTG	1 cut(s)	1218
Msp20I	TGGCCA	1 cut(s)	1584
MspA1I	CMGCKG	1 cut(s)	1890
MspI	CCGG	2 cut(s)	281, 1414
MspR9I	CCNGG	5 cut(s)	251, 1145, 2155, 2358, 2463
MunI	CAATTG	2 cut(s)	1384, 2144
Mva1269I	GAATGC	1 cut(s)	1912
MvaI	CCWGG	5 cut(s)	251, 1145, 2155, 2358, 2463
MvnI	CGCG	2 cut(s)	233, 338
NarI	GGCGCC	1 cut(s)	381
NdeI	CATATG	1 cut(s)	2686
NdeII	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
NlaIV	GGNNCC	5 cut(s)	382, 477, 2151, 2347, 2713
NmuCI	GTSAC	4 cut(s)	1019, 1388, 1712, 1988
NsbI	TGCGCA	1 cut(s)	262
NsiI	ATGCAT	2 cut(s)	1912, 1986
NspI	RCATGY	3 cut(s)	212, 367, 1120
NspV	TTCGAA	1 cut(s)	2722
PagI	TCATGA	2 cut(s)	1719, 2127
PceI	AGGCCT	1 cut(s)	1400
PciI	ACATGT	1 cut(s)	363
PciSI	GCTCTTC	3 cut(s)	867, 2073, 2277
PcsI	WCGNNNNNNNCGW	2 cut(s)	791, 2200
PctI	GAATGC	1 cut(s)	1912
PdmI	GAANNNNTTC	1 cut(s)	1838
PfeI	GAWTC	5 cut(s)	533, 907, 1631, 1839, 2353
PflMI	CCANNNNNTGG	1 cut(s)	2554
PfoI	TCCNGGA	3 cut(s)	249, 2356, 2461
PleI	GAGTC	4 cut(s)	326, 886, 1739, 2250
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	4 cut(s)	326, 886, 1739, 2250
Ppu21I	YACGTR	2 cut(s)	843, 2413
PscI	ACATGT	1 cut(s)	363
Psp124BI	GAGCTC	2 cut(s)	258, 1868
Psp6I	CCWGG	5 cut(s)	249, 1143, 2153, 2356, 2461
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	5 cut(s)	249, 1143, 2153, 2356, 2461
PspN4I	GGNNCC	5 cut(s)	382, 477, 2151, 2347, 2713
PsrI	GAACNNNNNNTAC	2 cut(s)	1497, 1529
PstI	CTGCAG	1 cut(s)	2084
PstNI	CAGNNNCTG	1 cut(s)	1175
PsuI	RGATCY	2 cut(s)	1853, 2331
RsaI	GTAC	2 cut(s)	368, 2370
RsaNI	GTAC	2 cut(s)	367, 2369
RseI	CAYNNNNRTG	1 cut(s)	1218
SacI	GAGCTC	2 cut(s)	258, 1868
SapI	GCTCTTC	3 cut(s)	867, 2073, 2277
SaqAI	TTAA	9 cut(s)	651, 923, 1184, 1193, 1227, 1652, 1796, 2697, 2835
Sau3AI	GATC	7 cut(s)	309, 1546, 1853, 1965, 2047, 2182, 2331
SchI	GAGTC	4 cut(s)	326, 887, 1739, 2251
ScrFI	CCNGG	5 cut(s)	251, 1145, 2155, 2358, 2463
SduI	GDGCHC	6 cut(s)	258, 350, 1868, 2154, 2272, 2348
SexAI	ACCWGGT	1 cut(s)	1143
SfaNI	GCATC	7 cut(s)	382, 1181, 1317, 1435, 1971, 2013, 2803
SfcI	CTRYAG	1 cut(s)	2080
SfoI	GGCGCC	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	2722
SmiMI	CAYNNNNRTG	1 cut(s)	1218
SnaBI	TACGTA	1 cut(s)	843
SseBI	AGGCCT	1 cut(s)	1400
SspDI	GGCGCC	1 cut(s)	380
SspI	AATATT	1 cut(s)	1162
SspMI	CTAG	5 cut(s)	227, 1782, 1830, 2394, 2511
SstI	GAGCTC	2 cut(s)	258, 1868
StuI	AGGCCT	1 cut(s)	1400
StyD4I	CCNGG	5 cut(s)	249, 1143, 2153, 2356, 2461
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	4 cut(s)	430, 1062, 1086, 1410
TaiI	ACGT	7 cut(s)	147, 845, 1058, 1315, 2060, 2197, 2415
TaqI	TCGA	3 cut(s)	2203, 2378, 2722
TatI	WGTACW	1 cut(s)	2368
TauI	GCSGC	6 cut(s)	236, 247, 381, 467, 860, 1781
TfiI	GAWTC	5 cut(s)	533, 907, 1631, 1839, 2353
Tru1I	TTAA	9 cut(s)	651, 923, 1184, 1193, 1227, 1652, 1796, 2697, 2835
Tru9I	TTAA	9 cut(s)	651, 923, 1184, 1193, 1227, 1652, 1796, 2697, 2835
TscAI	CASTG	2 cut(s)	1272, 1592
TseFI	GTSAC	4 cut(s)	1019, 1388, 1712, 1988
TseI	GCWGC	9 cut(s)	159, 289, 695, 914, 1004, 1169, 1775, 2321, 2390
Tsp45I	GTSAC	4 cut(s)	1019, 1388, 1712, 1988
TspGWI	ACGGA	3 cut(s)	27, 412, 1220
TspRI	CASTG	2 cut(s)	1272, 1592
Van91I	CCANNNNNTGG	1 cut(s)	2554
XapI	RAATTY	4 cut(s)	958, 1812, 2306, 2541
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	3 cut(s)	212, 367, 1120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2469
XmiI	GTMKAC	3 cut(s)	845, 1765, 2692
XmnI	GAANNNNTTC	1 cut(s)	1838
XspI	CTAG	5 cut(s)	227, 1782, 1830, 2394, 2511
Zsp2I	ATGCAT	2 cut(s)	1912, 1986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.