Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016210

Physical Location & Seq

Genomic Coordinates Reverse (-)

51982164 .. 51985022

Gene Structure 2859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG317400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2859 bp

ATGGCACACAGTTACACCACTTCTTCTGCCGTCCAATTCCGACCCATGTTGAACAAAGCCCAGCTAAACCCAGCTCTCCATTTCTTCAAATTCTCCGAAAAGCCCACCAAATTATTACCTTCCTTGAAGCAGGTTTGCGATGAAGGCAGCCTCAGGGAAGCTTTTAAATCACTCAGCAACTTGCTAACTCTTGATGGTTCACTCGAGCTTTCTTTAGATGGAGCTTACTCGCCGCTCCTTGAGCTCTGTGCAAAGAAGAAGGCTCTATCAGAAGGGCAGCAAATCCATGCCCATTTGATTAAATCCTGTGCTGTATGGGACTCCGCGTTTCTGAGTACCAAACTTGTTTACATGTACGGGAAATGTGGCTCCGTTATGAATGCACAGAAGGTGTTTGATAAAATGTCTCACAGAACGATTTTCACTTGGAACGCAATGATCGGTGCTTGTGCGACAAATGGGGAGCCTTTAAAGGCTCTTGAGATGTATAGTGACATGAGGGTTTTCGGGGTTCCTCTTGATTCGTTTACTTTCCCTTGTGTCCTGAAAGCGTGTGTTGCGGTTGATAGTCTCTGTTGTGGGGAAGAAATTCATGGCTTGGCTATCAAATGTGGGTATGATGATGTAGCATTTGTGGTTAACTCGCTAGTTGCAATGTATGCAAACTGCAATGATCTTGGTGTGGCGAGGAAATTGTTTGATGGTATGAAAGAAAAGGAGGATGTTGTGTCATGGAATTCTATTATTTCGGCATATTCAGCAAAGGGGATGTCCGTTGAAGCGTTGGGATTGTTTCGAGAAATGCAGCAGGTGGGACTTGCCATGAACACGTATACTTTTGTGGCTGCCCTTCAAGCGTGTGAGGATTCTTTTTGTGGAAAACTCGGTATGGAGATTCATGCTGCTGTGTTGAAACTGAATTATTGTTTTGATATTTATGTGGCAAATTCTCTGCTTGCAATGTATGTGAGGTGTGGTAAAATGGATGAGGCTGCAAGGATTTTTAATGACTTGGATGACAAGGATATTGTCTCATGGAATACATTACTCTCTGGTTTTGTCCAAAATGGACTATATGAGGAAGCTCTGCTGTTGTTCCATGATATGCAGAGGATTGGTCATAAACCTGACCAGGTTTCTTTGTTGAATATCCTTGCAGCATCTGGTCGGTTAGGAAGTTTATTGTCAGGAATGGAAGCTCATGCTTATGCGATAAAAAATGGATTCGATTCTGATTTGCAGGTTGGGAACACACTGATAGATATGTATGCTAAGTGTTGTTGTGTGAACTTGATGGGCCGTGCTTTTGACAAGATGCCAAATAAAGACTTCATTTCTTGGACAACAATTATTGCTGGCTATGCTCAGAACAATTGTCACACAAGGGCCTTAGAACTGTGCCGGAAGGTGCAAATGTTAGGGCTGGAAGTGGATGCAATGATGGTAGAAAGCATTTTACTGGCTTGCGAATCTTTGAAATGTGTTTCTTTGGTAAAAGAAGTTCATGGTTACGCTACGAGGAGAGGTTTATTTGATCTCGTCTTGCAAAATGCAGTTGTCAATGTATATGGCCAGTGTGGTTACATAGATTATGCATATCAGATGTTCAAATTGATTGAATCTAAAGATGTTGTGTCTTGGACAAGTATGATATCTTGTTATGTTCATAATGGGCTTGCAAATGAGGCTCTTGAACTTTGTCACTTCATGAAAGAAACAAATGTTGAACCTGATGCCATAGCGCTTGTAAGTATACTATCTGCTGCCGCTAGTTTGTCTGCTTTGATGAAAGGGAAAGAAATTCACGGTTTTCTTACTAGGAAGGGCTTCATCTTGGAGGGATCTGTTGCGAGCTCTCTTGTTGATATGTATGCCCGCTGTGGAAATCTGAAGAATGCATACAACATATATAATTGTGTTAGAAACAAAAGTCTAATTTTATGGACTACCATGATCAATGCTTATGGGATGCATGGTCATGGCAAGGAAGCCATTGATTTCTTCAGAAGGATGCAAAACCAAGAGATTGTTCCTGATCATATTACGTTTTTGGCTCTTCTATATGCCTGCAGTCATTCAGGCTTGATTGATGAGGGTAAAGGACTATTTGAAATCATGATACATGAGTATCAATTAGACCCCTGGCCAGAACATTTTGCTTGCATGGTTGATCTTCTTGGACGTGCCAATCGATTGGAAGAGGCGTATCATTTTGTCAATAGCATGGAAAGTCAACCTACTGCTGAAGTATGGTGTGCTCTTCTTGGGGCTTGCCGAGTTCATTCTAACAAAGGATTAGAAGAAATTGCTGCAAAGAAGATCTTAGAGTTGGGCACCAAGAATCCAGGAAATTATGTGCTTGTGTCGAATATCTTTGCTGCTAGGGGAAGATGGGAACATGTAGAAGAAGTGAGGATCAAAATGAAGGTAATTGGGTTGAAGAAAAATCCAGGATGTAGTTGGATTGAGGCAGGAAAAAAAGTTCATACATTCACGGCTAGGGATAAGTCTCATCCTCAGTCCAATGAAATTTACCAAAAGTTAGCTCAAATAACTGAGACATTAGAAAGGGAAGCAGGCTATGTGGCTCAAACTAAATGTGTGTTGCAGAATGTAGAAGAAGAAGAGAAAGTTCAGATGCTTTATGGACATAGCGAAAGGTTAGCCATTGCATATGGTCTACTTAAGATTCCTGAGGGAACTCCTATTCGAATCACAAAGAACCTGCGGGTTTGTATGGATTGCCATACTTTTACTAAACTAGTTTCCAAAGTTTTTAGGCGGGTGCTTGTAGTTAGGGATGCTAATAGATTTCATCATTTCAAGGATGGAAAATGTTCTTGTGGCGATTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

952

Amino Acids

106.31

Weight (kDa)

6.76

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	139 - 186	1.1e-09	PPR repeat family
PPR	PF01535	141 - 171	1.6e-06	PPR repeat
PPR_2	PF13041	241 - 287	2.2e-10	PPR repeat family
PPR	PF01535	243 - 272	1.5e-07	PPR repeat
PPR_2	PF13041	341 - 380	7.9e-10	PPR repeat family
PPR	PF01535	344 - 373	1.8e-08	PPR repeat
PPR_2	PF13041	542 - 587	3.2e-08	PPR repeat family
PPR	PF01535	545 - 572	2.6e-06	PPR repeat
PPR_2	PF13041	645 - 691	5e-09	PPR repeat family
PPR	PF01535	647 - 673	3.2e-06	PPR repeat
E_motif	PF20431	761 - 823	3.2e-24	E motif
Eplus_motif	PF20430	828 - 852	8.7e-11	E+ motif
DYW_deaminase	PF14432	860 - 952	1.6e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63370 AT3G63370
fragaria_vesca	FvH4_2g22910
malus_domestica	MD11G1278400.v1.1
prunus_persica	Prupe.8G234400_v2.0.a1
pyrus_communis	pycom11g24590
rosa_chinensis	RchiOBHm_Chr6g0289871
rosa_laevigata	RLG00000012263
rosa_multiflora	Rmu_ssc0000314.1_g000006
rosa_rugosa	Rorug06G0207400
rosa_samantha	Rh6AG319000 Rh6BG326000 Rh6CG331900 Rh6DG317400
rosa_wichuraiana	Rw6G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	799
Acc36I	ACCTGC	4 cut(s)	121, 799, 1231, 2733
AccB1I	GGYRCC	1 cut(s)	2333
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	3 cut(s)	833, 1753, 2680
AccII	CGCG	1 cut(s)	326
AciI	CCGC	7 cut(s)	233, 324, 560, 1767, 1876, 2728, 2782
AclWI	GGATC	2 cut(s)	1849, 2423
AcoI	YGGCCR	2 cut(s)	1570, 2144
AcsI	RAATTY	6 cut(s)	89, 588, 736, 946, 1800, 2529
AcuI	CTGAAG	3 cut(s)	1910, 1987, 2265
AfaI	GTAC	2 cut(s)	337, 356
AfeI	AGCGCT	1 cut(s)	1743
AflII	CTTAAG	1 cut(s)	2684
AflIII	ACRYGT	3 cut(s)	351, 828, 2398
AhlI	ACTAGT	1 cut(s)	2761
AjiI	CACGTC	1 cut(s)	2183
AjnI	CCWGG	4 cut(s)	1131, 2141, 2344, 2449
AjuI	GAANNNNNNNTTGG	2 cut(s)	2013, 2045
AloI	GAACNNNNNNTCC	2 cut(s)	2466, 2498
Alw21I	GWGCWC	3 cut(s)	246, 1856, 2260
Alw26I	GTCTC	5 cut(s)	411, 575, 1036, 2514, 2552
AlwI	GGATC	2 cut(s)	1849, 2423
AlwNI	CAGNNNCTG	1 cut(s)	1163
Ama87I	CYCGRG	1 cut(s)	203
Aor51HI	AGCGCT	1 cut(s)	1743
AoxI	GGCC	4 cut(s)	1297, 1386, 1570, 2144
ApoI	RAATTY	6 cut(s)	89, 588, 736, 946, 1800, 2529
ArsI	GACNNNNNNTTYG	2 cut(s)	755, 787
Asp700I	GAANNNNTTC	3 cut(s)	588, 1826, 2836
AspLEI	GCGC	1 cut(s)	1744
AspS9I	GGNCC	2 cut(s)	1297, 1386
AsuII	TTCGAA	1 cut(s)	2710
AvaI	CYCGRG	1 cut(s)	203
AxyI	CCTNAGG	2 cut(s)	152, 2694
BaeGI	GKGCMC	1 cut(s)	2336
BaeI	ACNNNNGTAYC	4 cut(s)	2111, 2111, 2144, 2144
BalI	TGGCCA	2 cut(s)	1572, 2146
BanI	GGYRCC	1 cut(s)	2333
BanII	GRGCYC	2 cut(s)	246, 1856
BarI	GAAGNNNNNNTAC	2 cut(s)	1883, 1915
Bbv12I	GWGCWC	3 cut(s)	246, 1856, 2260
BccI	CCATC	7 cut(s)	188, 212, 695, 1288, 1435, 2385, 2822
BceAI	ACGGC	3 cut(s)	14, 1284, 2511
BciT130I	CCWGG	4 cut(s)	1133, 2143, 2346, 2451
BclI	TGATCA	2 cut(s)	1953, 2035
BcoDI	GTCTC	5 cut(s)	411, 575, 1036, 2514, 2552
BcuI	ACTAGT	1 cut(s)	2761
BfaI	CTAG	6 cut(s)	647, 1770, 1818, 2382, 2499, 2762
BfmI	CTRYAG	1 cut(s)	2068
BfoI	RGCGCY	1 cut(s)	1745
BfrI	CTTAAG	1 cut(s)	2684
BfuAI	ACCTGC	4 cut(s)	121, 799, 1231, 2733
BglII	AGATCT	1 cut(s)	2319
Bme1390I	CCNGG	4 cut(s)	1133, 2143, 2346, 2451
BmeT110I	CYCGRG	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	2183
BmgT120I	GGNCC	2 cut(s)	1297, 1386
BmiI	GGNNCC	4 cut(s)	370, 465, 513, 2335
BmrFI	CCNGG	4 cut(s)	1133, 2143, 2346, 2451
BmsI	GCATC	8 cut(s)	1169, 1305, 1423, 1723, 1959, 2001, 2628, 2791
Bpu14I	TTCGAA	1 cut(s)	2710
BpuEI	CTTGAG	2 cut(s)	260, 500
Bsa29I	ATCGAT	1 cut(s)	2191
BsaAI	YACGTR	1 cut(s)	831
BsaJI	CCNNGG	1 cut(s)	2141
Bse1I	ACTGG	2 cut(s)	1464, 1573
Bse21I	CCTNAGG	2 cut(s)	152, 2694
Bse3DI	GCAATG	6 cut(s)	441, 660, 676, 966, 1443, 2667
BseBI	CCWGG	4 cut(s)	1133, 2143, 2346, 2451
BseCI	ATCGAT	1 cut(s)	2191
BseDI	CCNNGG	1 cut(s)	2141
BseMI	GCAATG	6 cut(s)	441, 660, 676, 966, 1443, 2667
BseMII	CTCAG	7 cut(s)	166, 187, 323, 1379, 2531, 2547, 2685
BseNI	ACTGG	2 cut(s)	1464, 1573
BseRI	GAGGAG	1 cut(s)	1534
BseSI	GKGCMC	1 cut(s)	2336
BseYI	CCCAGC	2 cut(s)	60, 70
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	4 cut(s)	1299, 1388, 1572, 2146
BshNI	GGYRCC	1 cut(s)	2333
BshVI	ATCGAT	1 cut(s)	2191
BsiHKAI	GWGCWC	3 cut(s)	246, 1856, 2260
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	1402
BslFI	GGGAC	2 cut(s)	332, 828
BsmAI	GTCTC	5 cut(s)	411, 575, 1036, 2514, 2552
BsmFI	GGGAC	2 cut(s)	332, 828
BsmI	GAATGC	2 cut(s)	385, 1900
BsnI	GGCC	4 cut(s)	1299, 1388, 1572, 2146
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	2710
Bsp1286I	GDGCHC	4 cut(s)	246, 1856, 2260, 2336
Bsp143I	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
BspACI	CCGC	7 cut(s)	233, 324, 560, 1767, 1876, 2728, 2782
BspANI	GGCC	4 cut(s)	1299, 1388, 1572, 2146
BspCNI	CTCAG	7 cut(s)	165, 186, 324, 1378, 2530, 2548, 2686
BspDI	ATCGAT	1 cut(s)	2191
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	2 cut(s)	1707, 2115
BspLI	GGNNCC	4 cut(s)	370, 465, 513, 2335
BspMAI	CTGCAG	1 cut(s)	2072
BspMI	ACCTGC	4 cut(s)	121, 799, 1231, 2733
BspPI	GGATC	2 cut(s)	1849, 2423
BspQI	GCTCTTC	2 cut(s)	2061, 2265
BspT104I	TTCGAA	1 cut(s)	2710
BspT107I	GGYRCC	1 cut(s)	2333
BspTI	CTTAAG	1 cut(s)	2684
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	6 cut(s)	441, 660, 676, 966, 1443, 2667
BsrI	ACTGG	2 cut(s)	1464, 1573
BssECI	CCNNGG	1 cut(s)	2141
BssMI	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
BssNAI	GTATAC	2 cut(s)	834, 1754
Bst1107I	GTATAC	2 cut(s)	834, 1754
Bst2UI	CCWGG	4 cut(s)	1133, 2143, 2346, 2451
Bst4CI	ACNGT	3 cut(s)	11, 1398, 1808
Bst6I	CTCTTC	4 cut(s)	2061, 2193, 2265, 2619
BstAFI	CTTAAG	1 cut(s)	2684
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	831
BstBI	TTCGAA	1 cut(s)	2710
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	1745
BstHHI	GCGC	1 cut(s)	1744
BstKTI	GATC	9 cut(s)	441, 676, 1537, 1844, 1956, 2038, 2173, 2322, 2418
BstMAI	GTCTC	5 cut(s)	411, 575, 1036, 2514, 2552
BstMBI	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
BstMWI	GCNNNNNNNGC	8 cut(s)	144, 241, 557, 659, 758, 854, 1361, 1685
BstNI	CCWGG	4 cut(s)	1133, 2143, 2346, 2451
BstNSI	RCATGY	2 cut(s)	355, 2402
BstSCI	CCNGG	4 cut(s)	1131, 2141, 2344, 2449
BstSFI	CTRYAG	1 cut(s)	2068
BstSLI	GKGCMC	1 cut(s)	2336
BstUI	CGCG	1 cut(s)	326
BstX2I	RGATCY	2 cut(s)	1841, 2319
BstXI	CCANNNNNNTGG	1 cut(s)	2194
BstYI	RGATCY	2 cut(s)	1841, 2319
BstZ17I	GTATAC	2 cut(s)	834, 1754
Bsu15I	ATCGAT	1 cut(s)	2191
Bsu36I	CCTNAGG	2 cut(s)	152, 2694
BsuRI	GGCC	4 cut(s)	1299, 1388, 1572, 2146
BsuTUI	ATCGAT	1 cut(s)	2191
BtgZI	GCGATG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	2183
BtsIMutI	CAGTG	2 cut(s)	1253, 1580
BveI	ACCTGC	4 cut(s)	121, 799, 1231, 2733
CaiI	CAGNNNCTG	1 cut(s)	1163
CciI	TCATGA	2 cut(s)	1707, 2115
CfoI	GCGC	1 cut(s)	1744
Cfr13I	GGNCC	2 cut(s)	1297, 1386
ClaI	ATCGAT	1 cut(s)	2191
CsiI	ACCWGGT	1 cut(s)	1131
Csp6I	GTAC	2 cut(s)	336, 355
CviQI	GTAC	2 cut(s)	336, 355
DpnI	GATC	9 cut(s)	440, 675, 1536, 1843, 1955, 2037, 2172, 2321, 2417
DpnII	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
DraI	TTTAAA	2 cut(s)	166, 471
EaeI	YGGCCR	2 cut(s)	1570, 2144
Eam1104I	CTCTTC	4 cut(s)	2061, 2193, 2265, 2619
EarI	CTCTTC	4 cut(s)	2061, 2193, 2265, 2619
Ecl136II	GAGCTC	2 cut(s)	244, 1854
Eco24I	GRGCYC	2 cut(s)	246, 1856
Eco32I	GATATC	1 cut(s)	1653
Eco47III	AGCGCT	1 cut(s)	1743
Eco53kI	GAGCTC	2 cut(s)	244, 1854
Eco57I	CTGAAG	3 cut(s)	1910, 1987, 2265
Eco81I	CCTNAGG	2 cut(s)	152, 2694
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	2 cut(s)	244, 1854
EcoO109I	RGGNCCY	1 cut(s)	1386
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	4 cut(s)	1131, 2141, 2344, 2449
EcoRV	GATATC	1 cut(s)	1653
EcoT22I	ATGCAT	3 cut(s)	1597, 1900, 1974
EcoT38I	GRGCYC	2 cut(s)	246, 1856
FalI	AAGNNNNNCTT	2 cut(s)	2306, 2338
FaqI	GGGAC	2 cut(s)	332, 828
FauI	CCCGC	3 cut(s)	1883, 2721, 2775
FauNDI	CATATG	1 cut(s)	2674
FbaI	TGATCA	2 cut(s)	1953, 2035
FblI	GTMKAC	3 cut(s)	833, 1753, 2680
FriOI	GRGCYC	2 cut(s)	246, 1856
FspBI	CTAG	6 cut(s)	647, 1770, 1818, 2382, 2499, 2762
GlaI	GCGC	1 cut(s)	1743
GsaI	CCCAGC	2 cut(s)	64, 74
HaeII	RGCGCY	1 cut(s)	1745
HaeIII	GGCC	4 cut(s)	1299, 1388, 1572, 2146
HapII	CCGG	1 cut(s)	1402
HhaI	GCGC	1 cut(s)	1744
Hin6I	GCGC	1 cut(s)	1742
HinP1I	GCGC	1 cut(s)	1742
HincII	GTYRAC	2 cut(s)	640, 2234
HindII	GTYRAC	2 cut(s)	640, 2234
HindIII	AAGCTT	1 cut(s)	159
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	1 cut(s)	1402
Hpy166II	GTNNAC	9 cut(s)	200, 349, 528, 640, 834, 1288, 1754, 2234, 2681
Hpy8I	GTNNAC	9 cut(s)	200, 349, 528, 640, 834, 1288, 1754, 2234, 2681
HpyCH4III	ACNGT	3 cut(s)	11, 1398, 1808
HpyCH4IV	ACGT	3 cut(s)	830, 2045, 2182
HpyF10VI	GCNNNNNNNGC	8 cut(s)	144, 241, 557, 659, 758, 854, 1361, 1685
HpySE526I	ACGT	3 cut(s)	830, 2045, 2182
HspAI	GCGC	1 cut(s)	1742
Ksp22I	TGATCA	2 cut(s)	1953, 2035
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
LguI	GCTCTTC	2 cut(s)	2061, 2265
LmnI	GCTCC	4 cut(s)	221, 240, 374, 463
LweI	GCATC	8 cut(s)	1169, 1305, 1423, 1723, 1959, 2001, 2628, 2791
MabI	ACCWGGT	1 cut(s)	1131
MaeI	CTAG	6 cut(s)	647, 1770, 1818, 2382, 2499, 2762
MaeII	ACGT	3 cut(s)	830, 2045, 2182
MaeIII	GTNAC	6 cut(s)	11, 491, 1376, 1508, 1580, 1700
MalI	GATC	9 cut(s)	440, 675, 1536, 1843, 1955, 2037, 2172, 2321, 2417
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
MfeI	CAATTG	1 cut(s)	1372
MflI	RGATCY	2 cut(s)	1841, 2319
MhlI	GDGCHC	4 cut(s)	246, 1856, 2260, 2336
MlsI	TGGCCA	2 cut(s)	1572, 2146
MluNI	TGGCCA	2 cut(s)	1572, 2146
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	64, 2441
Mox20I	TGGCCA	2 cut(s)	1572, 2146
Mph1103I	ATGCAT	3 cut(s)	1597, 1900, 1974
MroXI	GAANNNNTTC	3 cut(s)	588, 1826, 2836
MscI	TGGCCA	2 cut(s)	1572, 2146
MseI	TTAA	6 cut(s)	165, 300, 470, 639, 1005, 2685
MslI	CAYNNNNRTG	2 cut(s)	1206, 1977
Msp20I	TGGCCA	2 cut(s)	1572, 2146
MspA1I	CMGCKG	1 cut(s)	1878
MspCI	CTTAAG	1 cut(s)	2684
MspI	CCGG	1 cut(s)	1402
MspR9I	CCNGG	4 cut(s)	1133, 2143, 2346, 2451
MunI	CAATTG	1 cut(s)	1372
Mva1269I	GAATGC	2 cut(s)	385, 1900
MvaI	CCWGG	4 cut(s)	1133, 2143, 2346, 2451
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	8 cut(s)	144, 241, 557, 659, 758, 854, 1361, 1685
NdeI	CATATG	1 cut(s)	2674
NdeII	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
NlaIV	GGNNCC	4 cut(s)	370, 465, 513, 2335
NmeAIII	GCCGAG	1 cut(s)	2300
NmuCI	GTSAC	3 cut(s)	491, 1376, 1700
NsiI	ATGCAT	3 cut(s)	1597, 1900, 1974
NspI	RCATGY	2 cut(s)	355, 2402
NspV	TTCGAA	1 cut(s)	2710
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	2 cut(s)	1707, 2115
PaqCI	CACCTGC	1 cut(s)	799
PciI	ACATGT	2 cut(s)	351, 2398
PciSI	GCTCTTC	2 cut(s)	2061, 2265
PcsI	WCGNNNNNNNCGW	1 cut(s)	2188
PctI	GAATGC	2 cut(s)	385, 1900
PdmI	GAANNNNTTC	3 cut(s)	588, 1826, 2836
PfoI	TCCNGGA	2 cut(s)	2344, 2449
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Ppu21I	YACGTR	1 cut(s)	831
PscI	ACATGT	2 cut(s)	351, 2398
Psp124BI	GAGCTC	2 cut(s)	246, 1856
Psp6I	CCWGG	4 cut(s)	1131, 2141, 2344, 2449
PspFI	CCCAGC	2 cut(s)	60, 70
PspGI	CCWGG	4 cut(s)	1131, 2141, 2344, 2449
PspN4I	GGNNCC	4 cut(s)	370, 465, 513, 2335
PspPI	GGNCC	2 cut(s)	1297, 1386
PspXI	VCTCGAGB	1 cut(s)	203
PsrI	GAACNNNNNNTAC	2 cut(s)	1485, 1517
PstI	CTGCAG	1 cut(s)	2072
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	2 cut(s)	1841, 2319
RsaI	GTAC	2 cut(s)	337, 356
RsaNI	GTAC	2 cut(s)	336, 355
RseI	CAYNNNNRTG	2 cut(s)	1206, 1977
SacI	GAGCTC	2 cut(s)	246, 1856
SapI	GCTCTTC	2 cut(s)	2061, 2265
SaqAI	TTAA	6 cut(s)	165, 300, 470, 639, 1005, 2685
Sau3AI	GATC	9 cut(s)	438, 673, 1534, 1841, 1953, 2035, 2170, 2319, 2415
Sau96I	GGNCC	2 cut(s)	1297, 1386
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	4 cut(s)	1133, 2143, 2346, 2451
SduI	GDGCHC	4 cut(s)	246, 1856, 2260, 2336
SexAI	ACCWGGT	1 cut(s)	1131
SfaNI	GCATC	8 cut(s)	1169, 1305, 1423, 1723, 1959, 2001, 2628, 2791
SfcI	CTRYAG	1 cut(s)	2068
Sfr274I	CTCGAG	1 cut(s)	203
SfuI	TTCGAA	1 cut(s)	2710
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	1206, 1977
SmlI	CTYRAG	4 cut(s)	203, 239, 479, 2684
SmoI	CTYRAG	4 cut(s)	203, 239, 479, 2684
SpeI	ACTAGT	1 cut(s)	2761
SsiI	CCGC	7 cut(s)	233, 324, 560, 1767, 1876, 2728, 2782
SspMI	CTAG	6 cut(s)	647, 1770, 1818, 2382, 2499, 2762
SstI	GAGCTC	2 cut(s)	246, 1856
StyD4I	CCNGG	4 cut(s)	1131, 2141, 2344, 2449
TaaI	ACNGT	3 cut(s)	11, 1398, 1808
TaiI	ACGT	3 cut(s)	833, 2048, 2185
TaqI	TCGA	6 cut(s)	204, 796, 1227, 2191, 2366, 2710
TauI	GCSGC	2 cut(s)	235, 1769
Tru1I	TTAA	6 cut(s)	165, 300, 470, 639, 1005, 2685
Tru9I	TTAA	6 cut(s)	165, 300, 470, 639, 1005, 2685
TscAI	CASTG	2 cut(s)	1260, 1580
TseFI	GTSAC	3 cut(s)	491, 1376, 1700
Tsp45I	GTSAC	3 cut(s)	491, 1376, 1700
TspGWI	ACGGA	2 cut(s)	361, 763
TspRI	CASTG	2 cut(s)	1260, 1580
Vha464I	CTTAAG	1 cut(s)	2684
XapI	RAATTY	6 cut(s)	89, 588, 736, 946, 1800, 2529
XceI	RCATGY	2 cut(s)	355, 2402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2457
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	3 cut(s)	833, 1753, 2680
XmnI	GAANNNNTTC	3 cut(s)	588, 1826, 2836
XspI	CTAG	6 cut(s)	647, 1770, 1818, 2382, 2499, 2762
Zsp2I	ATGCAT	3 cut(s)	1597, 1900, 1974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.