Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016210

Physical Location & Seq

Genomic Coordinates Reverse (-)

55796695 .. 55799578

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG326000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTATGCAAACTGCAATGATCTTGGTGCGGCGAGGAAATTGTTTGATGGTATGAAAGAAAAGGAGGATGTTGTGTCATGGAATTCTATTATTTCAGCATATTCAGCAAAGGGGATGTCCGTTGAAGCGTTGGGATTGTTTCGAGAAATGCAGCAAGTGGGACTTGCCATGAACACGTATACTTTTGTGGCTGCTCTTCAAGCGTGTGAGGATTCTTTTTGTGGAAAACTCGGTATGGAGATTCATGCTGCTGTGTTGAAACTGAATTATTGTTTTGATATTTATGTGGCGAATTCTCTGCTTGCAATGTATGTGAGGTGTGGTAAAATGGATGAGGCTGCAAGGATTTTTAATGACTTGGATGACAAGGATATTGTCTCATGGAATACATTACTCTCTGGTTTTGTCCAAAATGGACTATATGAGGAAGCTCTGCTGTTGTTCCATGATATGCAGAGGATTGGTCATAAACCTGACCAGGTTGGGAACACACTGATAGATATGTATGCTAAGTGTTGTTGTGTGAACTTGATGGGCCGTGCTTTTGACAAGATGCCAAATAAAGACTTCATTTCTTGGACAACAATTATTGCTGGCTATGCTCAGAACAATTGTCACACAAGGGCCTTAGAACTGTGCCGGAAGCTGCTATTCAAGCAGAAGAGTGCGAGAAAGTGTGCGAGAGATGAGTTCCTGAAACAGGTAGATATCAGAGCAGGAAGTAATTTAATTGGTTTTGCTTCAATGTATGTGAGACTAATTGGTAACATTGGGTCTAGTTCAAGACTGCTGATGGTGAATGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

269

Amino Acids

30.13

Weight (kDa)

7.47

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 69	4.1e-11	PPR repeat family
PPR	PF01535	25 - 54	3.1e-08	PPR repeat
PPR_2	PF13041	123 - 160	4.2e-10	PPR repeat family
PPR	PF01535	126 - 155	3.7e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63370 AT3G63370
fragaria_vesca	FvH4_2g22910
malus_domestica	MD11G1278400.v1.1
prunus_persica	Prupe.8G234400_v2.0.a1
pyrus_communis	pycom11g24590
rosa_chinensis	RchiOBHm_Chr6g0289871
rosa_laevigata	RLG00000012263
rosa_multiflora	Rmu_ssc0000314.1_g000006
rosa_rugosa	Rorug06G0207400
rosa_samantha	Rh6AG319000 Rh6BG326000 Rh6CG331900 Rh6DG317400
rosa_wichuraiana	Rw6G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	82, 292
AfiI	CCNNNNNNNGG	1 cut(s)	700
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	6 cut(s)	125, 200, 259, 655, 744, 783
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	2 cut(s)	431, 646
AluI	AGCT	2 cut(s)	431, 646
Alw26I	GTCTC	2 cut(s)	382, 748
AoxI	GGCC	2 cut(s)	535, 624
ApeKI	GCWGC	5 cut(s)	151, 191, 248, 338, 646
ApoI	RAATTY	2 cut(s)	82, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspS9I	GGNCC	2 cut(s)	535, 624
AsuHPI	GGTGA	1 cut(s)	808
BbvI	GCAGC	5 cut(s)	163, 178, 235, 325, 633
BccI	CCATC	4 cut(s)	41, 526, 787, 797
BceAI	ACGGC	1 cut(s)	522
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	382, 748
BfaI	CTAG	1 cut(s)	777
BisI	GCNGC	6 cut(s)	30, 152, 192, 249, 339, 647
BlsI	GCNGC	6 cut(s)	31, 153, 193, 250, 340, 648
Bme1390I	CCNGG	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	535, 624
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse3DI	GCAATG	2 cut(s)	22, 312
BseBI	CCWGG	1 cut(s)	479
BseGI	GGATG	4 cut(s)	73, 120, 337, 367
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	2 cut(s)	22, 312
BseMII	CTCAG	1 cut(s)	617
BseXI	GCAGC	5 cut(s)	163, 178, 235, 325, 633
BshFI	GGCC	2 cut(s)	537, 626
BsiSI	CCGG	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	2 cut(s)	382, 748
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	537, 626
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	537, 626
BspCNI	CTCAG	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	201
BsrDI	GCAATG	2 cut(s)	22, 312
BssMI	GATC	1 cut(s)	19
BssNAI	GTATAC	1 cut(s)	180
Bst1107I	GTATAC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	2 cut(s)	201, 656
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	303, 595
BstDEI	CTNAG	3 cut(s)	510, 603, 628
BstENI	CCTNNNNNAGG	1 cut(s)	698
BstF5I	GGATG	4 cut(s)	73, 120, 337, 367
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	382, 748
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 200, 599, 655
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	5 cut(s)	163, 178, 235, 325, 633
BstZ17I	GTATAC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	537, 626
BtsCI	GGATG	4 cut(s)	73, 120, 337, 367
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	303, 595
Cfr13I	GGNCC	2 cut(s)	535, 624
CsiI	ACCWGGT	1 cut(s)	477
CviAII	CATG	5 cut(s)	78, 169, 245, 381, 446
CviJI	RGCY	7 cut(s)	191, 338, 431, 537, 597, 626, 646
CviKI_1	RGCY	7 cut(s)	191, 338, 431, 537, 597, 626, 646
DdeI	CTNAG	3 cut(s)	510, 603, 628
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	201, 656
EarI	CTCTTC	2 cut(s)	201, 656
Eco32I	GATATC	1 cut(s)	709
EcoNI	CCTNNNNNAGG	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	624
EcoRI	GAATTC	2 cut(s)	82, 292
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	709
FaeI	CATG	5 cut(s)	81, 172, 248, 384, 449
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	5 cut(s)	77, 168, 244, 380, 445
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	6 cut(s)	30, 152, 192, 249, 339, 647
FokI	GGATG	4 cut(s)	80, 127, 344, 374
Fsp4HI	GCNGC	6 cut(s)	30, 152, 192, 249, 339, 647
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	6 cut(s)	30, 152, 192, 249, 339, 647
HaeIII	GGCC	2 cut(s)	537, 626
HapII	CCGG	1 cut(s)	640
Hin1II	CATG	5 cut(s)	81, 172, 248, 384, 449
HinfI	GANTC	2 cut(s)	212, 241
HpaII	CCGG	1 cut(s)	640
HphI	GGTGA	1 cut(s)	808
Hpy166II	GTNNAC	2 cut(s)	180, 526
Hpy188I	TCNGA	2 cut(s)	606, 713
Hpy188III	TCNNGA	3 cut(s)	143, 694, 783
Hpy8I	GTNNAC	2 cut(s)	180, 526
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	6 cut(s)	8, 15, 151, 305, 341, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 200, 599, 655
HpyF3I	CTNAG	3 cut(s)	510, 603, 628
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	5 cut(s)	81, 172, 248, 384, 449
Kzo9I	GATC	1 cut(s)	19
LguI	GCTCTTC	1 cut(s)	201
LpnPI	CCDG	9 cut(s)	384, 464, 486, 491, 579, 653, 686, 702, 707
Lsp1109I	GCAGC	5 cut(s)	163, 178, 235, 325, 633
LweI	GCATC	1 cut(s)	543
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	614, 764
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	188, 673
MfeI	CAATTG	1 cut(s)	610
MluCI	AATT	9 cut(s)	38, 82, 265, 292, 585, 610, 724, 729, 759
MnlI	CCTC	7 cut(s)	27, 58, 202, 309, 328, 418, 450
MseI	TTAA	2 cut(s)	351, 728
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	1 cut(s)	479
MunI	CAATTG	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	4 cut(s)	104, 200, 599, 655
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	5 cut(s)	81, 172, 248, 384, 449
NmuCI	GTSAC	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	212, 241
PkrI	GCNGC	6 cut(s)	31, 153, 193, 250, 340, 648
Ppu21I	YACGTR	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspPI	GGNCC	2 cut(s)	535, 624
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	351, 728
SatI	GCNGC	6 cut(s)	30, 152, 192, 249, 339, 647
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	2 cut(s)	535, 624
ScrFI	CCNGG	1 cut(s)	479
SetI	ASST	7 cut(s)	179, 320, 433, 475, 483, 648, 705
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	543
Sse9I	AATT	9 cut(s)	38, 82, 265, 292, 585, 610, 724, 729, 759
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	142
TasI	AATT	9 cut(s)	38, 82, 265, 292, 585, 610, 724, 729, 759
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	212, 241
Tru1I	TTAA	2 cut(s)	351, 728
Tru9I	TTAA	2 cut(s)	351, 728
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	5 cut(s)	151, 191, 248, 338, 646
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	4 cut(s)	68, 185, 233, 559
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	498
XagI	CCTNNNNNAGG	1 cut(s)	698
XapI	RAATTY	2 cut(s)	82, 292
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.