Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016210

Physical Location & Seq

Genomic Coordinates Reverse (-)

51932038 .. 51935424

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG331900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGCTACGTCGTCTCCACACAGTTACACCACTCCTGCCGTCCAATTCCGACCCATGTTGAACAAAGCCCAGCTAAACCCAGCTCTCCATTTCTTCAAATTCTCCGAAAAGCCCACCAAATTATTACCTTCCTTGAAGCAGGTTTGCGATGAAGGCAGCCTCAGGGAAGCTTTTACATCACTCGGCAATTTGCTAACCCATCAAGACTCACTCGAGCTTTCTTTAGATGGAGCTTACTCGCCGCTCCTTGAGCTCTGTGCAAAGAGGAAGGCTCTATCAGAAGGGCAGCAAATCCATGCCCACTTGATTAAATCCGGTGCCGTATGGGATTCCGCGTTTCTGAGTACCAAGCTTGTTTACATGTACGGGAAATGTGGCTCCGTTATGAATGCACAGAAGGTGTTTGATAAAATGTCTCACAGAACGATTTTCACTTGGAACGCAATGATTGGTGCTTGTGCGTCAAACGGGGAGCCTCTAAAGGCTCTTGAGATGTACTGTGACATGCGGGTTCTCGGGGTTCCTCTTGATTCGTTTACTTTCCCTTGTGTACTGAAAGCATGTGTTGCAATTAATAGTCTCTGTTGTGGGGAAGAAATTCATGGCCTGGCTATCAAATGTGGGTATGATGATGTAGCATTTGTGGTTAACTCGCTAGTTGCAATGTATGCAAACTGCAATGATCTTGGTGCGGCGAGGAAATTGTTTGATGGTATGAAAGAAAAGGAGGATGTTGTGTCATGGAATTCTATTATTTCAGCATATTCAGCAAAGGGGATGTCCGTTGAAGCGTTGGGATTGTTTCGAGAAATGCAGCAGGTGGGACTTGCCATGAACACGTATACTTTTGTGGCTGCCCTTCAAGCGTGTGAGGATTCTTTTTGTGGAAAACTCGGTATGGAGATTCATGCTGCTGTGTTGAAACTGAATTATTGTTTTGATATTTATGTGGCGAATTCTCTGCTTGCAATGTATGTGAGGTGTGGTAAAATGGATGAGGCTGCAAGGATTTTTAATGACTTGGATGACAAGGATATTGTCTCATGGAATACATTACTCTCTGGTTTTGTCCAAAATGGACTATATGAGGAAGCCCTGCTGTTGTTCCATGATATGCAGAGGATTGGTCATAAACCTGACCAGGTTTCGTTGTTGAATATCCTTGCAGCATCTGGTCGGTTAGGAAGTTTGTTGTCAGGAATGGAAGCTCATGCTTATGCGATAAAAAATGGATTCGATTCTGATTTGCAGGTTGGGAACACACTGATAGATATGTATGCTAAATGTTGTTGTGTGAACTTGATGGGCCGTGCTTTTGACAAGATGCCAGATAAAGACTTCATTTCTTGGACAACAATTATTGCTGGCTATGCTCAGAACAATTGTCACATAAGGGCCTTAAAACTGTGCCAGAAGGTGCAAATGTTAGGGCTGGAAGTGGATGCGATGATGGTAGAAAGCATTTTACTCGCTTGCGAATCTTTAAAATGTGTTTCTTTGGTAAAAGAAGTTCATGGTTACGCTATGAGGAGAGGTTTATTTGATCTCGTCTTGCAAAATGCAGTTGTCAATGTATATGGCCAGTGTGGTTACATAGATTACGCATATCGGATGTTCAAGTTGATTGAATCTAAAGATGTTGTGTCTTGGACGAGTATGATATCTTGTTATGTTCATAATGGGCTTGCAAATGAGGCTCTTGAACTTTGTCACTTCATGAAAGAAACAAATGTTGAACCTGATGCCATAGCACTTGTAAGTATACTATCTGCTGCCGCTAGTTTGTCTGCTTTGATGAAAGGGAAAGAAATTCACGGTTTTCTTACTAGGAAGGGCTTCATCTTGGAGGGATCTGTTGCGAGCTCTCTTGTTGATATGTATGCCCGCTGTGGAAATCTGAAGAATGCATACAACATATATAACTGTGTTAGAAACAAAAGTCTAATTTTATGGACTACCATGATCAATGCTTATGGGATGCATGGTCATGGCAAGGAAGCCATTGATTTCTTCAGAAGGATGCAAAACCAAGAGATTGTTCCTGATCATATTACGTTTTTGGCTCTTCTATATGCCTGTAGTCATTCAGGCTTGATTGATGAGGGTAAAGGACTATTTGAAATCATGATACATGAGTATCAATTAGACCCCTGGCCAGAACATTTTGCTTGCATGGTTGATCTTCTTGGACGTGCCAATCGATTGGAAGAGGCGTATCATTTTGTCAATAGCATGGAGAGTCAACCTACTGCTGAAGTATGGTGTGCTCTTCTTGGGGCTTGCCGAGTTCATTCTAACAAAGGATTAGAAGAAATTGCTGCAAAGAAGATCTTAGAGTTGGGCACCAAGAATCCAGGAAATTATGTGCTTGTGTCGAATATCTTTGCTGCTAGGGGAAGATGGGAACATGTAGAAAAAGTGAGGATCAAAATGAAGGTAATTGGGTTGAAGAAAAATCCAGGATGTAGTTGGATTGAGGCAGGAAAAAAAGTTCATACATTCACGGCTAGGGATAAGTCTCATCCTCAGTCCAATGAAATTTACCAAAAGTTAGCTCAAATAACTGAGACATTAGAAAGGGAAGCAGGCTATGTGGCTCAAACTAAATGTGTGTTGCAGAATGTAGAGGAAGAAGAGAAAGTTCAGATGCTTTATGGACACAGTGAAAGGTTAGCCATTGCATATGGTCTACTTAAGATTCCTGAGGGAACTCCTATTCGAATCACAAAGAACCTGCGGGTTTGTATGGATTGCCATACTTTTACTAAACTAGTTTCCAAAGTTTTTAGGCGGGTGCTTGTAGTTAGGGATGCTAATAGATTCCATCATTTCGAGGATGGAAAATGTTCTTGTGGCGATTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

955

Amino Acids

106.62

Weight (kDa)

6.88

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	142 - 189	7.3e-10	PPR repeat family
PPR	PF01535	144 - 174	2.7e-07	PPR repeat
PPR_2	PF13041	244 - 290	2.2e-10	PPR repeat family
PPR	PF01535	246 - 275	1.5e-07	PPR repeat
PPR_2	PF13041	344 - 383	7.9e-10	PPR repeat family
PPR	PF01535	347 - 376	1.8e-08	PPR repeat
PPR_2	PF13041	545 - 590	3.2e-08	PPR repeat family
PPR	PF01535	548 - 575	2.6e-06	PPR repeat
PPR_2	PF13041	648 - 694	5e-09	PPR repeat family
PPR	PF01535	650 - 676	3.2e-06	PPR repeat
E_motif	PF20431	764 - 826	7.7e-25	E motif
Eplus_motif	PF20430	831 - 855	8.7e-11	E+ motif
DYW_deaminase	PF14432	863 - 955	2.5e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63370 AT3G63370
fragaria_vesca	FvH4_2g22910
malus_domestica	MD11G1278400.v1.1
prunus_persica	Prupe.8G234400_v2.0.a1
pyrus_communis	pycom11g24590
rosa_chinensis	RchiOBHm_Chr6g0289871
rosa_laevigata	RLG00000012263
rosa_multiflora	Rmu_ssc0000314.1_g000006
rosa_rugosa	Rorug06G0207400
rosa_samantha	Rh6AG319000 Rh6BG326000 Rh6CG331900 Rh6DG317400
rosa_wichuraiana	Rw6G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	808
Acc36I	ACCTGC	4 cut(s)	130, 808, 1240, 2742
AccB1I	GGYRCC	2 cut(s)	317, 2342
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	3 cut(s)	842, 1762, 2689
AccII	CGCG	1 cut(s)	335
AciI	CCGC	8 cut(s)	242, 333, 508, 692, 1776, 1885, 2737, 2791
AclWI	GGATC	2 cut(s)	1858, 2432
AcoI	YGGCCR	2 cut(s)	1579, 2153
AcsI	RAATTY	6 cut(s)	98, 597, 745, 955, 1809, 2538
AcuI	CTGAAG	3 cut(s)	1919, 1996, 2274
AfaI	GTAC	4 cut(s)	346, 365, 497, 552
AflII	CTTAAG	1 cut(s)	2693
AflIII	ACRYGT	3 cut(s)	360, 837, 2407
AhlI	ACTAGT	1 cut(s)	2770
AjiI	CACGTC	1 cut(s)	2192
AjnI	CCWGG	5 cut(s)	606, 1140, 2150, 2353, 2458
AjuI	GAANNNNNNNTTGG	2 cut(s)	2022, 2054
AloI	GAACNNNNNNTCC	2 cut(s)	2475, 2507
Alw21I	GWGCWC	3 cut(s)	255, 1865, 2269
Alw26I	GTCTC	6 cut(s)	18, 420, 584, 1045, 2523, 2561
AlwI	GGATC	2 cut(s)	1858, 2432
AlwNI	CAGNNNCTG	1 cut(s)	1172
Ama87I	CYCGRG	2 cut(s)	212, 515
AoxI	GGCC	5 cut(s)	604, 1306, 1395, 1579, 2153
ApoI	RAATTY	6 cut(s)	98, 597, 745, 955, 1809, 2538
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AseI	ATTAAT	1 cut(s)	573
Asp700I	GAANNNNTTC	3 cut(s)	597, 1835, 2845
AspS9I	GGNCC	2 cut(s)	1306, 1395
AsuII	TTCGAA	1 cut(s)	2719
AvaI	CYCGRG	2 cut(s)	212, 515
AxyI	CCTNAGG	2 cut(s)	161, 2703
BaeGI	GKGCMC	1 cut(s)	2345
BaeI	ACNNNNGTAYC	4 cut(s)	2120, 2120, 2153, 2153
BalI	TGGCCA	2 cut(s)	1581, 2155
BanI	GGYRCC	2 cut(s)	317, 2342
BanII	GRGCYC	2 cut(s)	255, 1865
BarI	GAAGNNNNNNTAC	2 cut(s)	1892, 1924
Bbv12I	GWGCWC	3 cut(s)	255, 1865, 2269
BccI	CCATC	8 cut(s)	207, 221, 704, 1297, 1444, 2394, 2831, 2832
BceAI	ACGGC	4 cut(s)	23, 305, 1293, 2520
BcgI	CGANNNNNNTGC	4 cut(s)	943, 977, 1450, 1484
BciT130I	CCWGG	5 cut(s)	608, 1142, 2152, 2355, 2460
BclI	TGATCA	2 cut(s)	1962, 2044
BcoDI	GTCTC	6 cut(s)	18, 420, 584, 1045, 2523, 2561
BcuI	ACTAGT	1 cut(s)	2770
BfaI	CTAG	6 cut(s)	656, 1779, 1827, 2391, 2508, 2771
BfmI	CTRYAG	1 cut(s)	2077
BfrI	CTTAAG	1 cut(s)	2693
BfuAI	ACCTGC	4 cut(s)	130, 808, 1240, 2742
BglII	AGATCT	1 cut(s)	2328
Bme1390I	CCNGG	5 cut(s)	608, 1142, 2152, 2355, 2460
BmeT110I	CYCGRG	2 cut(s)	212, 515
BmgBI	CACGTC	1 cut(s)	2192
BmgT120I	GGNCC	2 cut(s)	1306, 1395
BmiI	GGNNCC	5 cut(s)	319, 379, 474, 522, 2344
BmrFI	CCNGG	5 cut(s)	608, 1142, 2152, 2355, 2460
BmsI	GCATC	8 cut(s)	1178, 1314, 1432, 1732, 1968, 2010, 2637, 2800
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
Bpu14I	TTCGAA	1 cut(s)	2719
BpuEI	CTTGAG	2 cut(s)	269, 509
Bsa29I	ATCGAT	1 cut(s)	2200
BsaAI	YACGTR	1 cut(s)	840
BsaJI	CCNNGG	1 cut(s)	2150
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	1582
Bse21I	CCTNAGG	2 cut(s)	161, 2703
Bse3DI	GCAATG	5 cut(s)	450, 669, 685, 975, 2676
BseBI	CCWGG	5 cut(s)	608, 1142, 2152, 2355, 2460
BseCI	ATCGAT	1 cut(s)	2200
BseDI	CCNNGG	1 cut(s)	2150
BseMI	GCAATG	5 cut(s)	450, 669, 685, 975, 2676
BseMII	CTCAG	6 cut(s)	175, 332, 1388, 2540, 2556, 2694
BseNI	ACTGG	1 cut(s)	1582
BseRI	GAGGAG	1 cut(s)	1543
BseSI	GKGCMC	1 cut(s)	2345
BseYI	CCCAGC	2 cut(s)	69, 79
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	5 cut(s)	606, 1308, 1397, 1581, 2155
BshNI	GGYRCC	2 cut(s)	317, 2342
BshVI	ATCGAT	1 cut(s)	2200
BsiHKAI	GWGCWC	3 cut(s)	255, 1865, 2269
BsiHKCI	CYCGRG	2 cut(s)	212, 515
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	837
BsmAI	GTCTC	6 cut(s)	18, 420, 584, 1045, 2523, 2561
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	837
BsmI	GAATGC	2 cut(s)	394, 1909
BsnI	GGCC	5 cut(s)	606, 1308, 1397, 1581, 2155
BsoBI	CYCGRG	2 cut(s)	212, 515
Bsp119I	TTCGAA	1 cut(s)	2719
Bsp1286I	GDGCHC	4 cut(s)	255, 1865, 2269, 2345
Bsp143I	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
BspACI	CCGC	8 cut(s)	242, 333, 508, 692, 1776, 1885, 2737, 2791
BspANI	GGCC	5 cut(s)	606, 1308, 1397, 1581, 2155
BspCNI	CTCAG	6 cut(s)	174, 333, 1387, 2539, 2557, 2695
BspDI	ATCGAT	1 cut(s)	2200
BspFNI	CGCG	1 cut(s)	335
BspHI	TCATGA	2 cut(s)	1716, 2124
BspLI	GGNNCC	5 cut(s)	319, 379, 474, 522, 2344
BspMI	ACCTGC	4 cut(s)	130, 808, 1240, 2742
BspPI	GGATC	2 cut(s)	1858, 2432
BspQI	GCTCTTC	2 cut(s)	2070, 2274
BspT104I	TTCGAA	1 cut(s)	2719
BspT107I	GGYRCC	2 cut(s)	317, 2342
BspTI	CTTAAG	1 cut(s)	2693
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	5 cut(s)	450, 669, 685, 975, 2676
BsrI	ACTGG	1 cut(s)	1582
BssECI	CCNNGG	1 cut(s)	2150
BssMI	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
BssNAI	GTATAC	2 cut(s)	843, 1763
Bst1107I	GTATAC	2 cut(s)	843, 1763
Bst2UI	CCWGG	5 cut(s)	608, 1142, 2152, 2355, 2460
Bst4CI	ACNGT	6 cut(s)	23, 500, 1407, 1817, 1925, 2663
Bst6I	CTCTTC	4 cut(s)	2070, 2202, 2274, 2628
BstAFI	CTTAAG	1 cut(s)	2693
BstAPI	GCANNNNNTGC	2 cut(s)	566, 668
BstBAI	YACGTR	1 cut(s)	840
BstBI	TTCGAA	1 cut(s)	2719
BstC8I	GCNNGC	9 cut(s)	966, 1366, 1474, 1686, 1861, 1885, 2170, 2281, 2587
BstDEI	CTNAG	7 cut(s)	161, 341, 1374, 2332, 2526, 2565, 2703
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	8 cut(s)	685, 1546, 1853, 1965, 2047, 2182, 2331, 2427
BstMAI	GTCTC	6 cut(s)	18, 420, 584, 1045, 2523, 2561
BstMBI	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
BstMWI	GCNNNNNNNGC	8 cut(s)	153, 250, 566, 668, 767, 863, 1370, 1694
BstNI	CCWGG	5 cut(s)	608, 1142, 2152, 2355, 2460
BstNSI	RCATGY	4 cut(s)	364, 508, 564, 2411
BstSCI	CCNGG	5 cut(s)	606, 1140, 2150, 2353, 2458
BstSFI	CTRYAG	1 cut(s)	2077
BstSLI	GKGCMC	1 cut(s)	2345
BstUI	CGCG	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	1850, 2328
BstXI	CCANNNNNNTGG	1 cut(s)	2203
BstYI	RGATCY	2 cut(s)	1850, 2328
BstZ17I	GTATAC	2 cut(s)	843, 1763
Bsu15I	ATCGAT	1 cut(s)	2200
Bsu36I	CCTNAGG	2 cut(s)	161, 2703
BsuRI	GGCC	5 cut(s)	606, 1308, 1397, 1581, 2155
BsuTUI	ATCGAT	1 cut(s)	2200
BtgZI	GCGATG	2 cut(s)	162, 1460
BtrI	CACGTC	1 cut(s)	2192
BtsIMutI	CAGTG	3 cut(s)	1262, 1589, 2668
BveI	ACCTGC	4 cut(s)	130, 808, 1240, 2742
Cac8I	GCNNGC	9 cut(s)	966, 1366, 1474, 1686, 1861, 1885, 2170, 2281, 2587
CaiI	CAGNNNCTG	1 cut(s)	1172
CciI	TCATGA	2 cut(s)	1716, 2124
Cfr13I	GGNCC	2 cut(s)	1306, 1395
ClaI	ATCGAT	1 cut(s)	2200
CseI	GACGC	1 cut(s)	450
CsiI	ACCWGGT	1 cut(s)	1140
Csp6I	GTAC	4 cut(s)	345, 364, 496, 551
CviQI	GTAC	4 cut(s)	345, 364, 496, 551
DdeI	CTNAG	7 cut(s)	161, 341, 1374, 2332, 2526, 2565, 2703
DpnI	GATC	8 cut(s)	684, 1545, 1852, 1964, 2046, 2181, 2330, 2426
DpnII	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
DraI	TTTAAA	1 cut(s)	1485
EaeI	YGGCCR	2 cut(s)	1579, 2153
Eam1104I	CTCTTC	4 cut(s)	2070, 2202, 2274, 2628
EarI	CTCTTC	4 cut(s)	2070, 2202, 2274, 2628
Ecl136II	GAGCTC	2 cut(s)	253, 1863
Eco24I	GRGCYC	2 cut(s)	255, 1865
Eco32I	GATATC	1 cut(s)	1662
Eco53kI	GAGCTC	2 cut(s)	253, 1863
Eco57I	CTGAAG	3 cut(s)	1919, 1996, 2274
Eco81I	CCTNAGG	2 cut(s)	161, 2703
Eco88I	CYCGRG	2 cut(s)	212, 515
EcoICRI	GAGCTC	2 cut(s)	253, 1863
EcoO109I	RGGNCCY	1 cut(s)	1395
EcoRI	GAATTC	2 cut(s)	745, 955
EcoRII	CCWGG	5 cut(s)	606, 1140, 2150, 2353, 2458
EcoRV	GATATC	1 cut(s)	1662
EcoT22I	ATGCAT	2 cut(s)	1909, 1983
EcoT38I	GRGCYC	2 cut(s)	255, 1865
Esp3I	CGTCTC	1 cut(s)	18
FalI	AAGNNNNNCTT	2 cut(s)	2315, 2347
FaqI	GGGAC	1 cut(s)	837
FauI	CCCGC	4 cut(s)	501, 1892, 2730, 2784
FauNDI	CATATG	1 cut(s)	2683
FbaI	TGATCA	2 cut(s)	1962, 2044
FblI	GTMKAC	3 cut(s)	842, 1762, 2689
FriOI	GRGCYC	2 cut(s)	255, 1865
FspBI	CTAG	6 cut(s)	656, 1779, 1827, 2391, 2508, 2771
GsaI	CCCAGC	2 cut(s)	73, 83
HaeIII	GGCC	5 cut(s)	606, 1308, 1397, 1581, 2155
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	450
HincII	GTYRAC	2 cut(s)	649, 2243
HindII	GTYRAC	2 cut(s)	649, 2243
HindIII	AAGCTT	2 cut(s)	168, 350
HpaI	GTTAAC	1 cut(s)	649
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	9 cut(s)	358, 537, 551, 649, 843, 1297, 1763, 2243, 2690
Hpy8I	GTNNAC	9 cut(s)	358, 537, 551, 649, 843, 1297, 1763, 2243, 2690
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4III	ACNGT	6 cut(s)	23, 500, 1407, 1817, 1925, 2663
HpyCH4IV	ACGT	4 cut(s)	8, 839, 2054, 2191
HpyF10VI	GCNNNNNNNGC	8 cut(s)	153, 250, 566, 668, 767, 863, 1370, 1694
HpyF3I	CTNAG	7 cut(s)	161, 341, 1374, 2332, 2526, 2565, 2703
HpySE526I	ACGT	4 cut(s)	8, 839, 2054, 2191
Ksp22I	TGATCA	2 cut(s)	1962, 2044
KspAI	GTTAAC	1 cut(s)	649
Kzo9I	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
LguI	GCTCTTC	2 cut(s)	2070, 2274
LmnI	GCTCC	4 cut(s)	230, 249, 383, 472
LweI	GCATC	8 cut(s)	1178, 1314, 1432, 1732, 1968, 2010, 2637, 2800
MabI	ACCWGGT	1 cut(s)	1140
MaeI	CTAG	6 cut(s)	656, 1779, 1827, 2391, 2508, 2771
MaeII	ACGT	4 cut(s)	8, 839, 2054, 2191
MaeIII	GTNAC	6 cut(s)	23, 500, 1385, 1517, 1589, 1709
MalI	GATC	8 cut(s)	684, 1545, 1852, 1964, 2046, 2181, 2330, 2426
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
MfeI	CAATTG	1 cut(s)	1381
MflI	RGATCY	2 cut(s)	1850, 2328
MhlI	GDGCHC	4 cut(s)	255, 1865, 2269, 2345
MlsI	TGGCCA	2 cut(s)	1581, 2155
MluNI	TGGCCA	2 cut(s)	1581, 2155
MlyI	GAGTC	2 cut(s)	200, 2248
MmeI	TCCRAC	2 cut(s)	73, 2450
Mox20I	TGGCCA	2 cut(s)	1581, 2155
Mph1103I	ATGCAT	2 cut(s)	1909, 1983
MroXI	GAANNNNTTC	3 cut(s)	597, 1835, 2845
MscI	TGGCCA	2 cut(s)	1581, 2155
MseI	TTAA	7 cut(s)	309, 573, 648, 1014, 1400, 1484, 2694
MslI	CAYNNNNRTG	2 cut(s)	1215, 1986
Msp20I	TGGCCA	2 cut(s)	1581, 2155
MspA1I	CMGCKG	1 cut(s)	1887
MspCI	CTTAAG	1 cut(s)	2693
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	5 cut(s)	608, 1142, 2152, 2355, 2460
MunI	CAATTG	1 cut(s)	1381
Mva1269I	GAATGC	2 cut(s)	394, 1909
MvaI	CCWGG	5 cut(s)	608, 1142, 2152, 2355, 2460
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	8 cut(s)	153, 250, 566, 668, 767, 863, 1370, 1694
NdeI	CATATG	1 cut(s)	2683
NdeII	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
NlaIV	GGNNCC	5 cut(s)	319, 379, 474, 522, 2344
NmeAIII	GCCGAG	2 cut(s)	162, 2309
NmuCI	GTSAC	3 cut(s)	500, 1385, 1709
NsiI	ATGCAT	2 cut(s)	1909, 1983
NspI	RCATGY	4 cut(s)	364, 508, 564, 2411
NspV	TTCGAA	1 cut(s)	2719
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	2 cut(s)	1716, 2124
PaqCI	CACCTGC	1 cut(s)	808
PciI	ACATGT	2 cut(s)	360, 2407
PciSI	GCTCTTC	2 cut(s)	2070, 2274
PcsI	WCGNNNNNNNCGW	1 cut(s)	2197
PctI	GAATGC	2 cut(s)	394, 1909
PdmI	GAANNNNTTC	3 cut(s)	597, 1835, 2845
PfoI	TCCNGGA	2 cut(s)	2353, 2458
PleI	GAGTC	2 cut(s)	200, 2247
PpsI	GAGTC	2 cut(s)	200, 2247
Ppu21I	YACGTR	1 cut(s)	840
PscI	ACATGT	2 cut(s)	360, 2407
PshBI	ATTAAT	1 cut(s)	573
Psp124BI	GAGCTC	2 cut(s)	255, 1865
Psp6I	CCWGG	5 cut(s)	606, 1140, 2150, 2353, 2458
PspFI	CCCAGC	2 cut(s)	69, 79
PspGI	CCWGG	5 cut(s)	606, 1140, 2150, 2353, 2458
PspN4I	GGNNCC	5 cut(s)	319, 379, 474, 522, 2344
PspPI	GGNCC	2 cut(s)	1306, 1395
PspXI	VCTCGAGB	1 cut(s)	212
PsrI	GAACNNNNNNTAC	2 cut(s)	1494, 1526
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	2 cut(s)	1850, 2328
RsaI	GTAC	4 cut(s)	346, 365, 497, 552
RsaNI	GTAC	4 cut(s)	345, 364, 496, 551
RseI	CAYNNNNRTG	2 cut(s)	1215, 1986
SacI	GAGCTC	2 cut(s)	255, 1865
SapI	GCTCTTC	2 cut(s)	2070, 2274
SaqAI	TTAA	7 cut(s)	309, 573, 648, 1014, 1400, 1484, 2694
Sau3AI	GATC	8 cut(s)	682, 1543, 1850, 1962, 2044, 2179, 2328, 2424
Sau96I	GGNCC	2 cut(s)	1306, 1395
SchI	GAGTC	2 cut(s)	200, 2248
ScrFI	CCNGG	5 cut(s)	608, 1142, 2152, 2355, 2460
SduI	GDGCHC	4 cut(s)	255, 1865, 2269, 2345
SexAI	ACCWGGT	1 cut(s)	1140
SfaNI	GCATC	8 cut(s)	1178, 1314, 1432, 1732, 1968, 2010, 2637, 2800
SfcI	CTRYAG	1 cut(s)	2077
Sfr274I	CTCGAG	1 cut(s)	212
SfuI	TTCGAA	1 cut(s)	2719
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	2 cut(s)	1215, 1986
SmlI	CTYRAG	4 cut(s)	212, 248, 488, 2693
SmoI	CTYRAG	4 cut(s)	212, 248, 488, 2693
SpeI	ACTAGT	1 cut(s)	2770
SsiI	CCGC	8 cut(s)	242, 333, 508, 692, 1776, 1885, 2737, 2791
SspMI	CTAG	6 cut(s)	656, 1779, 1827, 2391, 2508, 2771
SstI	GAGCTC	2 cut(s)	255, 1865
StyD4I	CCNGG	5 cut(s)	606, 1140, 2150, 2353, 2458
TaaI	ACNGT	6 cut(s)	23, 500, 1407, 1817, 1925, 2663
TaiI	ACGT	4 cut(s)	11, 842, 2057, 2194
TaqI	TCGA	7 cut(s)	213, 805, 1236, 2200, 2375, 2719, 2832
TatI	WGTACW	2 cut(s)	495, 550
TauI	GCSGC	3 cut(s)	244, 695, 1778
Tru1I	TTAA	7 cut(s)	309, 573, 648, 1014, 1400, 1484, 2694
Tru9I	TTAA	7 cut(s)	309, 573, 648, 1014, 1400, 1484, 2694
TscAI	CASTG	3 cut(s)	1269, 1589, 2668
TseFI	GTSAC	3 cut(s)	500, 1385, 1709
Tsp45I	GTSAC	3 cut(s)	500, 1385, 1709
TspGWI	ACGGA	2 cut(s)	370, 772
TspRI	CASTG	3 cut(s)	1269, 1589, 2668
Vha464I	CTTAAG	1 cut(s)	2693
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	6 cut(s)	98, 597, 745, 955, 1809, 2538
XceI	RCATGY	4 cut(s)	364, 508, 564, 2411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2466
XhoI	CTCGAG	1 cut(s)	212
XmiI	GTMKAC	3 cut(s)	842, 1762, 2689
XmnI	GAANNNNTTC	3 cut(s)	597, 1835, 2845
XspI	CTAG	6 cut(s)	656, 1779, 1827, 2391, 2508, 2771
Zsp2I	ATGCAT	2 cut(s)	1909, 1983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.