FvH4_2g23081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016094
Physical Location & Seq
Reverse (-)
18926304 .. 18927596
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23081.t1

Sequence Viewer

Length: 1215 bp
ATGGAAGTCCTAGAACTCTATGAACTCAGCTACTCTGATCTCCTACTTGTGTCGTCAAATAATGTCTCACTGGAAGAGCTTGAAAGGGTGGAGTTATCTAGCAAAGCTATAATGGAAGCCCTAGGGCCCATGGGCCCAGGTCTGCTGTCCATCATCGGTGTCCCCAAAGCCGCCGCTCTCCGCTGGAACCTCCTCCCTCTGGCTCGGAAGCTAGCCCTTATGGACCCTAATCACCGCAAGCTTATTCTCAAGGATCACAAATTGGGGAGTGATGTGCCTTTGAAAAACCCAGATAGAAAAGTTTCATCTTTTGCTATGCAAATCAAATATTCAAATGATATTGAAGATACTCGTGTGAATTCAGAGCATGAATTAGTGAGTGGATTTGATAATCTTGGAAATGGGTTTAGGGAGTTGGGAATTTGCATGATGGAGCTTGGTCTTAGGTTAGCTAGAATTTGTGATAGAGCCATTGGTGGCCAAGAGCTTGAGCAGAGCTTATTGGAATCTGGCACTGCCAAAGCTCGGCTTATACATTATCATTCAGTTCTAGAGAAAACCATTCTGGTTCAGGAAGCTAGACCAAAAAAGGCCGTGAGTTCAAAGAGGATTCGGATTGGTGATGAAGTTAAACGGTCAGGTGGAGATGATTCTAGTAATCTGTGGCAACAATGGCATTATGATTATGGGATTTTCACTGTGTTGACAGCTCCATTGTTTGTATTGGCTTCTAATGCGCAAGCATCAGAAGAAAGGGAAGAAGAATGTGCTTACCCCAACGGGCATACTTATTTGCAAATATTTGATCCAAGCAAGAAAAATGTGTTCATGGTGAAGGCTTCTCCTGAGAGTTTTATCATTCAGGTTGGAGAGTCGGCTGATATCATATCGCGAGGAAAGCTTTGTGCCACCCTTCATTCGGTTGCTAGACCTCCCAAGTTTGAACATTTGAGCAGAGAAACTTTTGTTCTATTCTTGCAGCCTGCTTGGAACAAGACTTTCTCTACAGAAGATTATCCCATGAACCAGATCTCGGGGACATCTAAGGAGATAAAATGCGATGATGAGTCAGAAAGTCGTAGGATAACTGAAGAAATACAGAAAATTGTACCACCTCTGGCAATGCGATTGAAGAATAGCATGACATTTGCAGACTTCTCGCGCGAAACCACCAAACAATACTATGGTGGCACTGGTTTGCAGTCAAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy

Protein Analysis

405

Amino Acids

45.4

Weight (kDa)

6.2

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63290 AT3G63290
fragaria_vesca FvH4_2g23081
malus_domestica MD03G1259400.v1.1
prunus_persica Prupe.8G235900_v2.0.a1
pyrus_communis pycom03g20740
rosa_chinensis RchiOBHm_Chr6g0290231
rosa_laevigata RLG00000012232
rosa_roxburghii Rroxscaffold_7G00177220
rosa_rugosa Rorug06G0211100
rosa_samantha Rh6AG321400 Rh6BG328500 Rh6CG334500 Rh6DG321500
rosa_wichuraiana Rw6G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 738
AccBSI CCGCTC 1 cut(s) 176
AccII CGCG 3 cut(s) 892, 1162, 1164
AciI CCGC 4 cut(s) 171, 174, 181, 235
AclWI GGATC 2 cut(s) 261, 800
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 3 cut(s) 358, 420, 456
AcuI CTGAAG 1 cut(s) 1110
AfaI GTAC 1 cut(s) 1110
AfiI CCNNNNNNNGG 4 cut(s) 199, 525, 919, 1033
AgsI TTSAA 7 cut(s) 83, 283, 333, 344, 603, 944, 1132
AjnI CCWGG 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 261, 800
Ama87I CYCGRG 1 cut(s) 1033
AoxI GGCC 4 cut(s) 125, 133, 478, 591
ApaI GGGCCC 2 cut(s) 129, 137
ApeKI GCWGC 1 cut(s) 979
ApoI RAATTY 3 cut(s) 358, 420, 456
Asp700I GAANNNNTTC 1 cut(s) 301
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 2 cut(s) 739, 1164
AspS9I GGNCC 5 cut(s) 125, 126, 133, 134, 223
AsuHPI GGTGA 3 cut(s) 224, 632, 844
AsuNHI GCTAGC 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 1033
AvaII GGWCC 1 cut(s) 223
AvrII CCTAGG 1 cut(s) 121
BaeGI GKGCMC 2 cut(s) 129, 137
BaeI ACNNNNGTAYC 2 cut(s) 339, 372
BalI TGGCCA 1 cut(s) 480
BanII GRGCYC 2 cut(s) 129, 137
BauI CACGAG 1 cut(s) 351
BbvI GCAGC 1 cut(s) 991
BccI CCATC 2 cut(s) 158, 424
BceAI ACGGC 1 cut(s) 578
BcgI CGANNNNNNTGC 2 cut(s) 1140, 1174
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 9 cut(s) 11, 99, 122, 212, 453, 551, 579, 654, 927
BfmI CTRYAG 1 cut(s) 1005
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 3 cut(s) 171, 174, 980
BlnI CCTAGG 1 cut(s) 121
BlsI GCNGC 3 cut(s) 172, 175, 981
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 1033
BmgT120I GGNCC 5 cut(s) 125, 126, 133, 134, 223
BmiI GGNNCC 4 cut(s) 127, 135, 188, 225
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 752
BmtI GCTAGC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 233, 509
BsaJI CCNNGG 3 cut(s) 121, 129, 136
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 525, 919, 1033
Bse1I ACTGG 2 cut(s) 75, 1198
Bse3DI GCAATG 1 cut(s) 1128
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 121, 129, 136
BseLI CCNNNNNNNGG 4 cut(s) 199, 525, 919, 1033
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 2 cut(s) 40, 837
BseNI ACTGG 2 cut(s) 75, 1198
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 2 cut(s) 129, 137
BseXI GCAGC 1 cut(s) 991
Bsh1236I CGCG 3 cut(s) 892, 1162, 1164
BshFI GGCC 4 cut(s) 127, 135, 480, 593
BsiHKCI CYCGRG 1 cut(s) 1033
BslFI GGGAC 2 cut(s) 146, 1051
BslI CCNNNNNNNGG 4 cut(s) 199, 525, 919, 1033
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 2 cut(s) 146, 1051
BsnI GGCC 4 cut(s) 127, 135, 480, 593
BsoBI CYCGRG 1 cut(s) 1033
Bsp120I GGGCCC 2 cut(s) 125, 133
Bsp1286I GDGCHC 2 cut(s) 129, 137
Bsp143I GATC 4 cut(s) 37, 253, 805, 1029
Bsp19I CCATGG 1 cut(s) 129
Bsp68I TCGCGA 1 cut(s) 892
BspACI CCGC 4 cut(s) 171, 174, 181, 235
BspANI GGCC 4 cut(s) 127, 135, 480, 593
BspCNI CTCAG 2 cut(s) 39, 838
BspFNI CGCG 3 cut(s) 892, 1162, 1164
BspLI GGNNCC 4 cut(s) 127, 135, 188, 225
BspOI GCTAGC 1 cut(s) 215
BspPI GGATC 2 cut(s) 261, 800
BspQI GCTCTTC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 1128
BsrI ACTGG 2 cut(s) 75, 1198
BssECI CCNNGG 3 cut(s) 121, 129, 136
BssMI GATC 4 cut(s) 37, 253, 805, 1029
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 121, 129
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 636, 700
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 213, 239, 741, 984
BstDEI CTNAG 4 cut(s) 26, 443, 846, 1044
BstDSI CCRYGG 1 cut(s) 129
BstFNI CGCG 3 cut(s) 892, 1162, 1164
BstHHI GCGC 2 cut(s) 739, 1164
BstKTI GATC 4 cut(s) 40, 256, 808, 1032
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 4 cut(s) 37, 253, 805, 1029
BstMWI GCNNNNNNNGC 3 cut(s) 673, 734, 898
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 2 cut(s) 129, 137
BstUI CGCG 3 cut(s) 892, 1162, 1164
BstV1I GCAGC 1 cut(s) 991
BstX2I RGATCY 1 cut(s) 1029
BstYI RGATCY 1 cut(s) 1029
BsuRI GGCC 4 cut(s) 127, 135, 480, 593
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 1074
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 4 cut(s) 68, 513, 696, 1191
BtuMI TCGCGA 1 cut(s) 892
Cac8I GCNNGC 4 cut(s) 213, 239, 741, 984
CfoI GCGC 2 cut(s) 739, 1164
Cfr13I GGNCC 5 cut(s) 125, 126, 133, 134, 223
Csp6I GTAC 1 cut(s) 1109
CviAII CATG 6 cut(s) 130, 368, 427, 829, 1021, 1141
CviQI GTAC 1 cut(s) 1109
DdeI CTNAG 4 cut(s) 26, 443, 846, 1044
DpnI GATC 4 cut(s) 39, 255, 807, 1031
DpnII GATC 4 cut(s) 37, 253, 805, 1029
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 121, 129
Eco24I GRGCYC 2 cut(s) 129, 137
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 1033
EcoO109I RGGNCCY 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 1 cut(s) 883
EcoT14I CCWWGG 2 cut(s) 121, 129
EcoT38I GRGCYC 2 cut(s) 129, 137
ErhI CCWWGG 2 cut(s) 121, 129
FaeI CATG 6 cut(s) 133, 371, 430, 832, 1024, 1144
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 2 cut(s) 146, 1051
FatI CATG 6 cut(s) 129, 367, 426, 828, 1020, 1140
Fnu4HI GCNGC 3 cut(s) 171, 174, 980
FriOI GRGCYC 2 cut(s) 129, 137
Fsp4HI GCNGC 3 cut(s) 171, 174, 980
FspBI CTAG 9 cut(s) 11, 99, 122, 212, 453, 551, 579, 654, 927
FspI TGCGCA 1 cut(s) 738
GlaI GCGC 2 cut(s) 738, 1163
GluI GCNGC 3 cut(s) 171, 174, 980
HaeIII GGCC 4 cut(s) 127, 135, 480, 593
HhaI GCGC 2 cut(s) 739, 1164
Hin1II CATG 6 cut(s) 133, 371, 430, 832, 1024, 1144
Hin6I GCGC 2 cut(s) 737, 1162
HinP1I GCGC 2 cut(s) 737, 1162
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 2 cut(s) 239, 899
HinfI GANTC 5 cut(s) 506, 610, 650, 872, 1067
HphI GGTGA 3 cut(s) 224, 632, 844
Hpy166II GTNNAC 1 cut(s) 705
Hpy188I TCNGA 6 cut(s) 37, 207, 364, 615, 748, 1072
Hpy188III TCNNGA 4 cut(s) 551, 572, 845, 891
Hpy8I GTNNAC 1 cut(s) 705
HpyAV CCTTC 2 cut(s) 829, 923
HpyCH4III ACNGT 2 cut(s) 636, 700
HpyCH4V TGCA 6 cut(s) 319, 426, 796, 979, 1151, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 673, 734, 898
HpyF3I CTNAG 4 cut(s) 26, 443, 846, 1044
Hsp92II CATG 6 cut(s) 133, 371, 430, 832, 1024, 1144
HspAI GCGC 2 cut(s) 737, 1162
Kzo9I GATC 4 cut(s) 37, 253, 805, 1029
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 433, 715
Lsp1109I GCAGC 1 cut(s) 991
LweI GCATC 1 cut(s) 752
MaeI CTAG 9 cut(s) 11, 99, 122, 212, 453, 551, 579, 654, 927
MalI GATC 4 cut(s) 39, 255, 807, 1031
MbiI CCGCTC 1 cut(s) 176
MboI GATC 4 cut(s) 37, 253, 805, 1029
MboII GAAGA 8 cut(s) 86, 356, 761, 770, 773, 1022, 1103, 1144
MflI RGATCY 1 cut(s) 1029
MhlI GDGCHC 2 cut(s) 129, 137
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 6 cut(s) 260, 358, 371, 420, 456, 1104
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 2 cut(s) 881, 1076
MmeI TCCRAC 1 cut(s) 847
MnlI CCTC 7 cut(s) 200, 203, 207, 600, 887, 942, 1125
Mox20I TGGCCA 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 301
MscI TGGCCA 1 cut(s) 480
MseI TTAA 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 3 cut(s) 892, 1162, 1164
MwoI GCNNNNNNNGC 3 cut(s) 673, 734, 898
NcoI CCATGG 1 cut(s) 129
NdeII GATC 4 cut(s) 37, 253, 805, 1029
NheI GCTAGC 1 cut(s) 211
NlaIII CATG 6 cut(s) 133, 371, 430, 832, 1024, 1144
NlaIV GGNNCC 4 cut(s) 127, 135, 188, 225
NmeAIII GCCGAG 1 cut(s) 505
NruI TCGCGA 1 cut(s) 892
NsbI TGCGCA 1 cut(s) 738
PciSI GCTCTTC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 3 cut(s) 506, 610, 650
PkrI GCNGC 3 cut(s) 172, 175, 981
PleI GAGTC 2 cut(s) 880, 1075
PpsI GAGTC 2 cut(s) 880, 1075
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 4 cut(s) 127, 135, 188, 225
PspOMI GGGCCC 2 cut(s) 125, 133
PspPI GGNCC 5 cut(s) 125, 126, 133, 134, 223
PsuI RGATCY 1 cut(s) 1029
RruI TCGCGA 1 cut(s) 892
RsaI GTAC 1 cut(s) 1110
RsaNI GTAC 1 cut(s) 1109
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 3 cut(s) 171, 174, 980
Sau3AI GATC 4 cut(s) 37, 253, 805, 1029
Sau96I GGNCC 5 cut(s) 125, 126, 133, 134, 223
SchI GAGTC 2 cut(s) 881, 1076
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 2 cut(s) 129, 137
SfaNI GCATC 1 cut(s) 752
SfcI CTRYAG 1 cut(s) 1005
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 248, 488
SmoI CTYRAG 2 cut(s) 248, 488
Sse9I AATT 6 cut(s) 260, 358, 371, 420, 456, 1104
SsiI CCGC 4 cut(s) 171, 174, 181, 235
SspI AATATT 2 cut(s) 329, 801
SspMI CTAG 9 cut(s) 11, 99, 122, 212, 453, 551, 579, 654, 927
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 2 cut(s) 121, 129
TaaI ACNGT 2 cut(s) 636, 700
TasI AATT 6 cut(s) 260, 358, 371, 420, 456, 1104
TauI GCSGC 2 cut(s) 173, 176
TfiI GAWTC 3 cut(s) 506, 610, 650
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 4 cut(s) 75, 520, 703, 1198
TseI GCWGC 1 cut(s) 979
TspDTI ATGAA 7 cut(s) 36, 294, 384, 639, 817, 905, 1037
TspRI CASTG 4 cut(s) 75, 520, 703, 1198
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 3 cut(s) 358, 420, 456
XbaI TCTAGA 1 cut(s) 550
XmaJI CCTAGG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 9 cut(s) 11, 99, 122, 212, 453, 551, 579, 654, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.