Rorug06G0211100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016094
Physical Location & Seq
Forward (+)
33551350 .. 33552638
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0211100.1

Sequence Viewer

Length: 870 bp
ATGGATCAAAGAAAGCAGCACTTGATCACAGCAAGCATTCCATTTCTGACCATTCTTCTCTGTTTGGCAAACAAGACCTTAGCATCATCACTGTCTGATAAGAAGCACTTTGTGCTAGTTCATGGGTCATGCCATGGAGCTTGGTCCTGGTACAAGATCGTAACCCTAATTAGGTCATCTGGTCACAATGTCACTGCTCTAGACCTAGCTGCTTCTGGTGTTGACCCACAGCAAGCTAATGATCTGCAATCAATTTCCGACTACTTCAAGCCCTTGAGGGATTTCATGGAAGCTCTTCCACAACATGAAAGGGTCATCCTTGTTGGTCATAGCCTTGGCGGGTTGGCCATTTCTCAAGCCATGGAGAGGTTTCCGAGTAAGATTTCTGTAGCTGTTTTTGTTGCTGCTTTGATGCCTGGTCCGAACCTCAACATTTCCACTCTTCAACAAGAGTCATTTCGGCGACAAGATTCTCAATTGGACAGCCGATTTACATATGACCAAGGGCCAAACAACCCTCCAACAACTTTCATCTTCGGCCCCGTGTATTTGGCAACTAAGGTCTACCAACTTAGCCCTAAGGAGGATATAGAACTGGCCACTATGTTAATGAGACCACTACGTTTGTTTAGTGAAGAAGATATGTCTAAGGAACTAAAGCTGTCCAAGGAGAAATACGGGTCGGTCAATCGGGTTTTCATAATCTTATATGAAGATTTGGTCGAAAGGAAAGATTTTCAACTGTGGGTGATTGAGAGAAATCGCCCAAATCGTGTGGTGGAAATGAGAGGATCAGATCACATGGTCATGATGTCAAAGCCATTAGAGCTTTGGGGGCTTCTTCAAAACCTCGCTACAAATTATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy

Protein Analysis

289

Amino Acids

32.84

Weight (kDa)

7.8

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 34 - 141 4.3e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 36 - 159 1.3e-16 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 37 - 276 4.2e-18 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63290 AT3G63290
fragaria_vesca FvH4_2g23081
malus_domestica MD03G1259400.v1.1
prunus_persica Prupe.8G235900_v2.0.a1
pyrus_communis pycom03g20740
rosa_chinensis RchiOBHm_Chr6g0290231
rosa_laevigata RLG00000012232
rosa_roxburghii Rroxscaffold_7G00177220
rosa_rugosa Rorug06G0211100
rosa_samantha Rh6AG321400 Rh6BG328500 Rh6CG334500 Rh6DG321500
rosa_wichuraiana Rw6G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 564
AciI CCGC 1 cut(s) 339
AclWI GGATC 2 cut(s) 12, 799
AcoI YGGCCR 2 cut(s) 345, 597
AdeI CACNNNGTG 1 cut(s) 112
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 3 cut(s) 171, 366, 583
AgsI TTSAA 4 cut(s) 268, 446, 740, 845
AjnI CCWGG 2 cut(s) 146, 415
AluBI AGCT 7 cut(s) 140, 209, 236, 293, 392, 661, 829
AluI AGCT 7 cut(s) 140, 209, 236, 293, 392, 661, 829
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 2 cut(s) 12, 799
AoxI GGCC 4 cut(s) 345, 506, 538, 597
ApeKI GCWGC 3 cut(s) 16, 209, 404
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 4 cut(s) 144, 419, 506, 539
AsuHPI GGTGA 1 cut(s) 760
AvaII GGWCC 2 cut(s) 144, 419
AxyI CCTNAGG 1 cut(s) 579
BalI TGGCCA 2 cut(s) 347, 599
BbvI GCAGC 3 cut(s) 28, 196, 391
BciT130I CCWGG 2 cut(s) 148, 417
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 607
BfaI CTAG 3 cut(s) 116, 200, 206
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 3 cut(s) 17, 210, 405
BlsI GCNGC 3 cut(s) 18, 211, 406
Bme1390I CCNGG 2 cut(s) 148, 417
Bme18I GGWCC 2 cut(s) 144, 419
BmgT120I GGNCC 4 cut(s) 144, 419, 506, 539
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 2 cut(s) 148, 417
BmsI GCATC 2 cut(s) 92, 402
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 295, 339
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 5 cut(s) 133, 334, 360, 502, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 366, 583
Bse1I ACTGG 1 cut(s) 600
Bse21I CCTNAGG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 148, 417
BseDI CCNNGG 5 cut(s) 133, 334, 360, 502, 666
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 3 cut(s) 171, 366, 583
BseNI ACTGG 1 cut(s) 600
BseXI GCAGC 3 cut(s) 28, 196, 391
BshFI GGCC 4 cut(s) 347, 508, 540, 599
BslI CCNNNNNNNGG 3 cut(s) 171, 366, 583
BsmAI GTCTC 1 cut(s) 607
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 4 cut(s) 347, 508, 540, 599
Bso31I GGTCTC 1 cut(s) 607
Bsp143I GATC 6 cut(s) 4, 24, 156, 241, 791, 796
Bsp19I CCATGG 2 cut(s) 133, 360
BspACI CCGC 1 cut(s) 339
BspANI GGCC 4 cut(s) 347, 508, 540, 599
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 541
BspPI GGATC 2 cut(s) 12, 799
BspQI GCTCTTC 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 607
BsrI ACTGG 1 cut(s) 600
BssECI CCNNGG 5 cut(s) 133, 334, 360, 502, 666
BssMI GATC 6 cut(s) 4, 24, 156, 241, 791, 796
BssT1I CCWWGG 5 cut(s) 133, 334, 360, 502, 666
Bst2UI CCWGG 2 cut(s) 148, 417
Bst4CI ACNGT 2 cut(s) 93, 744
Bst6I CTCTTC 2 cut(s) 300, 447
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 34, 234
BstDEI CTNAG 5 cut(s) 79, 558, 572, 579, 648
BstDSI CCRYGG 2 cut(s) 133, 360
BstF5I GGATG 1 cut(s) 315
BstKTI GATC 6 cut(s) 7, 27, 159, 244, 794, 799
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 6 cut(s) 4, 24, 156, 241, 791, 796
BstMWI GCNNNNNNNGC 3 cut(s) 112, 826, 835
BstNI CCWGG 2 cut(s) 148, 417
BstSCI CCNGG 2 cut(s) 146, 415
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 28, 196, 391
Bsu36I CCTNAGG 1 cut(s) 579
BsuRI GGCC 4 cut(s) 347, 508, 540, 599
BtgI CCRYGG 2 cut(s) 133, 360
BtsCI GGATG 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 89, 192
Cac8I GCNNGC 2 cut(s) 34, 234
CciI TCATGA 1 cut(s) 807
Cfr13I GGNCC 4 cut(s) 144, 419, 506, 539
Csp6I GTAC 1 cut(s) 151
CspCI CAANNNNNGTGG 4 cut(s) 606, 641, 756, 791
CviAII CATG 8 cut(s) 122, 129, 134, 286, 305, 361, 802, 808
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 5 cut(s) 79, 558, 572, 579, 648
DpnI GATC 6 cut(s) 6, 26, 158, 243, 793, 798
DpnII GATC 6 cut(s) 4, 24, 156, 241, 791, 796
DraIII CACNNNGTG 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 345, 597
Eam1104I CTCTTC 2 cut(s) 300, 447
EarI CTCTTC 2 cut(s) 300, 447
Eco130I CCWWGG 5 cut(s) 133, 334, 360, 502, 666
Eco31I GGTCTC 1 cut(s) 607
Eco47I GGWCC 2 cut(s) 144, 419
Eco81I CCTNAGG 1 cut(s) 579
EcoRII CCWGG 2 cut(s) 146, 415
EcoT14I CCWWGG 5 cut(s) 133, 334, 360, 502, 666
ErhI CCWWGG 5 cut(s) 133, 334, 360, 502, 666
FaeI CATG 8 cut(s) 125, 132, 137, 289, 308, 364, 805, 811
FalI AAGNNNNNCTT 3 cut(s) 37, 92, 124
FatI CATG 8 cut(s) 121, 128, 133, 285, 304, 360, 801, 807
FauI CCCGC 1 cut(s) 332
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 3 cut(s) 17, 210, 405
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 3 cut(s) 17, 210, 405
FspBI CTAG 3 cut(s) 116, 200, 206
GluI GCNGC 3 cut(s) 17, 210, 405
HaeIII GGCC 4 cut(s) 347, 508, 540, 599
Hin1II CATG 8 cut(s) 125, 132, 137, 289, 308, 364, 805, 811
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 452, 470
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 2 cut(s) 223, 565
Hpy188I TCNGA 6 cut(s) 48, 97, 259, 375, 423, 796
Hpy188III TCNNGA 2 cut(s) 200, 808
Hpy8I GTNNAC 2 cut(s) 223, 565
HpyCH4III ACNGT 2 cut(s) 93, 744
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 826, 835
HpyF3I CTNAG 5 cut(s) 79, 558, 572, 579, 648
HpySE526I ACGT 1 cut(s) 622
Hsp92II CATG 8 cut(s) 125, 132, 137, 289, 308, 364, 805, 811
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 6 cut(s) 4, 24, 156, 241, 791, 796
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 7 cut(s) 133, 160, 165, 201, 402, 429, 581
Lsp1109I GCAGC 3 cut(s) 28, 196, 391
LweI GCATC 2 cut(s) 92, 402
MaeI CTAG 3 cut(s) 116, 200, 206
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 3 cut(s) 160, 182, 190
MalI GATC 6 cut(s) 6, 26, 158, 243, 793, 798
MboI GATC 6 cut(s) 4, 24, 156, 241, 791, 796
MboII GAAGA 8 cut(s) 47, 287, 434, 526, 647, 650, 725, 833
MfeI CAATTG 1 cut(s) 476
MlsI TGGCCA 2 cut(s) 347, 599
MluCI AATT 4 cut(s) 168, 252, 476, 859
MluNI TGGCCA 2 cut(s) 347, 599
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 2 cut(s) 282, 545
MnlI CCTC 7 cut(s) 270, 360, 437, 528, 577, 782, 860
Mox20I TGGCCA 2 cut(s) 347, 599
MroXI GAANNNNTTC 1 cut(s) 294
MscI TGGCCA 2 cut(s) 347, 599
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 1 cut(s) 806
Msp20I TGGCCA 2 cut(s) 347, 599
MspR9I CCNGG 2 cut(s) 148, 417
MunI CAATTG 1 cut(s) 476
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 2 cut(s) 148, 417
MwoI GCNNNNNNNGC 3 cut(s) 112, 826, 835
NcoI CCATGG 2 cut(s) 133, 360
NdeI CATATG 1 cut(s) 496
NdeII GATC 6 cut(s) 4, 24, 156, 241, 791, 796
NlaIII CATG 8 cut(s) 125, 132, 137, 289, 308, 364, 805, 811
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 2 cut(s) 182, 190
PagI TCATGA 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 769
PctI GAATGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 3 cut(s) 18, 211, 406
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 146, 415
PspGI CCWGG 2 cut(s) 146, 415
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 4 cut(s) 144, 419, 506, 539
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 806
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 3 cut(s) 17, 210, 405
Sau3AI GATC 6 cut(s) 4, 24, 156, 241, 791, 796
Sau96I GGNCC 4 cut(s) 144, 419, 506, 539
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 148, 417
SfaNI GCATC 2 cut(s) 92, 402
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 2 cut(s) 144, 419
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 2 cut(s) 274, 354
SmoI CTYRAG 2 cut(s) 274, 354
Sse9I AATT 4 cut(s) 168, 252, 476, 859
SsiI CCGC 1 cut(s) 339
SspMI CTAG 3 cut(s) 116, 200, 206
StyD4I CCNGG 2 cut(s) 146, 415
StyI CCWWGG 5 cut(s) 133, 334, 360, 502, 666
TaaI ACNGT 2 cut(s) 93, 744
TaiI ACGT 1 cut(s) 625
TaqI TCGA 1 cut(s) 723
TaqII GACCGA 1 cut(s) 673
TasI AATT 4 cut(s) 168, 252, 476, 859
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 2 cut(s) 96, 199
TseFI GTSAC 2 cut(s) 182, 190
TseI GCWGC 3 cut(s) 16, 209, 404
Tsp45I GTSAC 2 cut(s) 182, 190
TspDTI ATGAA 6 cut(s) 110, 274, 321, 520, 688, 726
TspRI CASTG 2 cut(s) 96, 199
VpaK11BI GGWCC 2 cut(s) 144, 419
XbaI TCTAGA 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 828
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 3 cut(s) 116, 200, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.