Rh6AG321400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016094
Physical Location & Seq
Reverse (-)
52159489 .. 52160787
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG321400.1

Sequence Viewer

Length: 1221 bp
ATGGTTGTCCTACAACTTTATGAGCTCAGCTACTCTGATCTCCTACTTGTGTCGTCAAACGATGTTTCACCGCCGTCACCGGAAGAGCTTGAAAGGGTGGAGTCAACTAGCAAAGCTATAATGGAAGCCCTAGGGCCCATGGGCCCAGGCTTGCTGTCGATCACCGGAGTCCCCAACGCCGCCGCTCTCCGCCGGAATCTCCTCCCTCTGGCTCGCAAGCTCGCCCTTCTGGAACCCAATCACCGCAAGCTCATTCTCAAGGATCACAAATTGGGGAGTGATGTGCCTTTGAAAAACCCAGAGAGAAATGTTTCATCTTTCGCTATGCAAATCAAATATTCACATGATATTGAAAATACCCAGTTGAATTCAGAGCATGAATCAGTGAGTGGATTTGAGAATCTTGGAAATGGGTTTAGAGATTTGGGAATTTGCATGATGGAGCTTGGTCTCAGACTAGCCAGAATTTGTGATAGAGCCATCGGTGGCCAAGAGCTTGAGCAGAGCTTATTGGAATCTGGCACTGCCAAAGCTCGGCTTATACACTATCATTCATTTCTAGAGAAAACCATTTTGGTTCAGGAAGCTAGACCCAAAAAGGCTGTTAATTCGAAGAGGATTCGGATTGGTGATGAAGATAAACGGTCAGGCGGAGATGATTCTAGTAATCTATGGCAACAATGGCATTATGATTATGGGATTTTCACTGTGTTAACGGCTCCACTGTTTGTATTGGCTTCTAATGCACAAGCACCAGAAGAAAGGGAAGAATGTGCTTACCCAAATGGGCATACTTATTTGCAAGTATTTGATCCAAGCAAGAACAATGTGTTCATGGTGAAGGCTTCTCCTGATAGTTTTATCATTCAGGTTGGAGAGTCGGCTGATATCATATCGCGAGGAAAGCTTTGTGCCACCCTTCATTCGGTTGCTAGACCTCCCAAGTTTGAAAATTTGAGCAGAGAAACTTTTGTTCTGTTCTTGCAGCCTGCTTGGAACAAAACTTTCTCTACCGAAGATTATCCCATGAACCAGATCTCAGGGACATCTTTTGAGGTAAAACGGGATGATGAGTTGGAAAGGAGTAGGCTAACTGAAGAAATACAGAAAATTGTACCACCTCTGGCAATGCGATTGAAGAATGGGATGACATTTGCAGATTTCTCGCATGAAACGACCAAGCAATACTATGGTGGCACTGGTTTGCAGTCTAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy

Protein Analysis

406

Amino Acids

45.51

Weight (kDa)

5.99

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63290 AT3G63290
fragaria_vesca FvH4_2g23081
malus_domestica MD03G1259400.v1.1
prunus_persica Prupe.8G235900_v2.0.a1
pyrus_communis pycom03g20740
rosa_chinensis RchiOBHm_Chr6g0290231
rosa_laevigata RLG00000012232
rosa_roxburghii Rroxscaffold_7G00177220
rosa_rugosa Rorug06G0211100
rosa_samantha Rh6AG321400 Rh6BG328500 Rh6CG334500 Rh6DG321500
rosa_wichuraiana Rw6G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 185
AccII CGCG 1 cut(s) 898
AciI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
AclWI GGATC 2 cut(s) 270, 806
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 4 cut(s) 367, 429, 465, 952
AcuI CTGAAG 1 cut(s) 1116
AfaI GTAC 1 cut(s) 1116
AfiI CCNNNNNNNGG 3 cut(s) 208, 534, 925
AgsI TTSAA 6 cut(s) 92, 292, 353, 367, 950, 1138
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 270, 806
AoxI GGCC 3 cut(s) 134, 142, 487
ApaI GGGCCC 2 cut(s) 138, 146
ApeKI GCWGC 1 cut(s) 985
ApoI RAATTY 4 cut(s) 367, 429, 465, 952
Asp700I GAANNNNTTC 1 cut(s) 310
AspA2I CCTAGG 1 cut(s) 130
AspS9I GGNCC 4 cut(s) 134, 135, 142, 143
AsuHPI GGTGA 6 cut(s) 60, 69, 154, 233, 641, 850
AsuII TTCGAA 1 cut(s) 611
AvrII CCTAGG 1 cut(s) 130
BaeGI GKGCMC 2 cut(s) 138, 146
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 3 cut(s) 27, 138, 146
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 997
BccI CCATC 2 cut(s) 433, 488
BceAI ACGGC 2 cut(s) 58, 732
BcgI CGANNNNNNTGC 2 cut(s) 1146, 1180
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
BglII AGATCT 1 cut(s) 1035
BisI GCNGC 3 cut(s) 180, 183, 986
BlnI CCTAGG 1 cut(s) 130
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 3 cut(s) 181, 184, 987
Bme1390I CCNGG 1 cut(s) 147
BmgT120I GGNCC 4 cut(s) 134, 135, 142, 143
BmiI GGNNCC 4 cut(s) 136, 144, 234, 720
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 611
BpuEI CTTGAG 2 cut(s) 242, 518
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 130, 138, 145
BsaWI WCCGGW 2 cut(s) 79, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 534, 925
Bse1I ACTGG 2 cut(s) 361, 1204
Bse3DI GCAATG 1 cut(s) 1134
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 130, 138, 145
BseGI GGATG 2 cut(s) 1072, 1152
BseLI CCNNNNNNNGG 3 cut(s) 208, 534, 925
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 3 cut(s) 40, 466, 1053
BseNI ACTGG 2 cut(s) 361, 1204
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 2 cut(s) 138, 146
BseXI GCAGC 1 cut(s) 997
Bsh1236I CGCG 1 cut(s) 898
BshFI GGCC 3 cut(s) 136, 144, 489
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 3 cut(s) 80, 165, 193
BslFI GGGAC 2 cut(s) 155, 1057
BslI CCNNNNNNNGG 3 cut(s) 208, 534, 925
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 155, 1057
BsnI GGCC 3 cut(s) 136, 144, 489
Bso31I GGTCTC 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 611
Bsp120I GGGCCC 2 cut(s) 134, 142
Bsp1286I GDGCHC 3 cut(s) 27, 138, 146
Bsp143I GATC 5 cut(s) 37, 159, 262, 811, 1035
Bsp1720I GCTNAGC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 898
BspACI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
BspANI GGCC 3 cut(s) 136, 144, 489
BspCNI CTCAG 3 cut(s) 39, 465, 1052
BspFNI CGCG 1 cut(s) 898
BspLI GGNNCC 4 cut(s) 136, 144, 234, 720
BspPI GGATC 2 cut(s) 270, 806
BspQI GCTCTTC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 1134
BsrI ACTGG 2 cut(s) 361, 1204
BssECI CCNNGG 3 cut(s) 130, 138, 145
BssMI GATC 5 cut(s) 37, 159, 262, 811, 1035
BssT1I CCWWGG 2 cut(s) 130, 138
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 3 cut(s) 645, 709, 726
Bst6I CTCTTC 2 cut(s) 78, 608
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 6 cut(s) 152, 214, 218, 222, 248, 990
BstDEI CTNAG 3 cut(s) 26, 452, 1039
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 1072, 1152
BstFNI CGCG 1 cut(s) 898
BstKTI GATC 5 cut(s) 40, 162, 265, 814, 1038
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 5 cut(s) 37, 159, 262, 811, 1035
BstMWI GCNNNNNNNGC 3 cut(s) 682, 743, 904
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSLI GKGCMC 2 cut(s) 138, 146
BstUI CGCG 1 cut(s) 898
BstV1I GCAGC 1 cut(s) 997
BstX2I RGATCY 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1035
BsuRI GGCC 3 cut(s) 136, 144, 489
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 1072, 1152
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 5 cut(s) 390, 522, 705, 722, 1197
BtuMI TCGCGA 1 cut(s) 898
Cac8I GCNNGC 6 cut(s) 152, 214, 218, 222, 248, 990
Cfr13I GGNCC 4 cut(s) 134, 135, 142, 143
Csp6I GTAC 1 cut(s) 1115
CviAII CATG 7 cut(s) 139, 344, 377, 436, 835, 1027, 1169
CviQI GTAC 1 cut(s) 1115
DdeI CTNAG 3 cut(s) 26, 452, 1039
DpnI GATC 5 cut(s) 39, 161, 264, 813, 1037
DpnII GATC 5 cut(s) 37, 159, 262, 811, 1035
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 78, 608
EarI CTCTTC 2 cut(s) 78, 608
EciI GGCGGA 2 cut(s) 179, 666
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 130, 138
Eco24I GRGCYC 3 cut(s) 27, 138, 146
Eco31I GGTCTC 1 cut(s) 455
Eco32I GATATC 1 cut(s) 889
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 1116
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 889
EcoT14I CCWWGG 2 cut(s) 130, 138
EcoT38I GRGCYC 3 cut(s) 27, 138, 146
ErhI CCWWGG 2 cut(s) 130, 138
FaeI CATG 7 cut(s) 142, 347, 380, 439, 838, 1030, 1172
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 2 cut(s) 155, 1057
FatI CATG 7 cut(s) 138, 343, 376, 435, 834, 1026, 1168
Fnu4HI GCNGC 3 cut(s) 180, 183, 986
FokI GGATG 2 cut(s) 1079, 1159
FriOI GRGCYC 3 cut(s) 27, 138, 146
Fsp4HI GCNGC 3 cut(s) 180, 183, 986
FspBI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
GluI GCNGC 3 cut(s) 180, 183, 986
HaeIII GGCC 3 cut(s) 136, 144, 489
HapII CCGG 3 cut(s) 80, 165, 193
Hin1II CATG 7 cut(s) 142, 347, 380, 439, 838, 1030, 1172
HincII GTYRAC 2 cut(s) 105, 714
HindII GTYRAC 2 cut(s) 105, 714
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 9 cut(s) 101, 168, 196, 380, 400, 515, 619, 659, 878
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 3 cut(s) 80, 165, 193
HphI GGTGA 6 cut(s) 60, 69, 154, 233, 641, 850
Hpy166II GTNNAC 2 cut(s) 105, 714
Hpy188I TCNGA 4 cut(s) 37, 373, 455, 624
Hpy188III TCNNGA 5 cut(s) 230, 560, 581, 851, 897
Hpy8I GTNNAC 2 cut(s) 105, 714
HpyAV CCTTC 3 cut(s) 236, 835, 929
HpyCH4III ACNGT 3 cut(s) 645, 709, 726
HpyCH4V TGCA 7 cut(s) 328, 435, 746, 802, 985, 1157, 1207
HpyF10VI GCNNNNNNNGC 3 cut(s) 682, 743, 904
HpyF3I CTNAG 3 cut(s) 26, 452, 1039
Hsp92II CATG 7 cut(s) 142, 347, 380, 439, 838, 1030, 1172
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 37, 159, 262, 811, 1035
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 442, 724
Lsp1109I GCAGC 1 cut(s) 997
MaeI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
MaeIII GTNAC 1 cut(s) 75
MalI GATC 5 cut(s) 39, 161, 264, 813, 1037
MbiI CCGCTC 1 cut(s) 185
MboI GATC 5 cut(s) 37, 159, 262, 811, 1035
MboII GAAGA 8 cut(s) 95, 625, 647, 770, 779, 1028, 1109, 1150
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 3 cut(s) 27, 138, 146
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 7 cut(s) 269, 367, 429, 465, 607, 952, 1110
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 3 cut(s) 110, 177, 887
MmeI TCCRAC 2 cut(s) 853, 1056
MnlI CCTC 7 cut(s) 212, 216, 609, 893, 948, 1048, 1131
Mox20I TGGCCA 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 489
MseI TTAA 2 cut(s) 606, 713
Msp20I TGGCCA 1 cut(s) 489
MspI CCGG 3 cut(s) 80, 165, 193
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 3 cut(s) 682, 743, 904
NcoI CCATGG 1 cut(s) 138
NdeII GATC 5 cut(s) 37, 159, 262, 811, 1035
NlaIII CATG 7 cut(s) 142, 347, 380, 439, 838, 1030, 1172
NlaIV GGNNCC 4 cut(s) 136, 144, 234, 720
NmeAIII GCCGAG 1 cut(s) 514
NmuCI GTSAC 1 cut(s) 75
NruI TCGCGA 1 cut(s) 898
NspV TTCGAA 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 1172
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 6 cut(s) 196, 380, 400, 515, 619, 659
PkrI GCNGC 3 cut(s) 181, 184, 987
PleI GAGTC 3 cut(s) 109, 176, 886
PpsI GAGTC 3 cut(s) 109, 176, 886
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 4 cut(s) 136, 144, 234, 720
PspOMI GGGCCC 2 cut(s) 134, 142
PspPI GGNCC 4 cut(s) 134, 135, 142, 143
PsuI RGATCY 1 cut(s) 1035
RruI TCGCGA 1 cut(s) 898
RsaI GTAC 1 cut(s) 1116
RsaNI GTAC 1 cut(s) 1115
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 606, 713
SatI GCNGC 3 cut(s) 180, 183, 986
Sau3AI GATC 5 cut(s) 37, 159, 262, 811, 1035
Sau96I GGNCC 4 cut(s) 134, 135, 142, 143
SchI GAGTC 3 cut(s) 110, 177, 887
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 3 cut(s) 27, 138, 146
SfuI TTCGAA 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 257, 497
SmoI CTYRAG 2 cut(s) 257, 497
Sse9I AATT 7 cut(s) 269, 367, 429, 465, 607, 952, 1110
SsiI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
SspI AATATT 1 cut(s) 338
SspMI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 2 cut(s) 130, 138
TaaI ACNGT 3 cut(s) 645, 709, 726
TaqI TCGA 2 cut(s) 158, 611
TasI AATT 7 cut(s) 269, 367, 429, 465, 607, 952, 1110
TauI GCSGC 2 cut(s) 182, 185
TfiI GAWTC 6 cut(s) 196, 380, 400, 515, 619, 659
Tru1I TTAA 2 cut(s) 606, 713
Tru9I TTAA 2 cut(s) 606, 713
TscAI CASTG 5 cut(s) 390, 529, 712, 729, 1204
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 1 cut(s) 985
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 8 cut(s) 303, 393, 543, 648, 823, 911, 1043, 1185
TspRI CASTG 5 cut(s) 390, 529, 712, 729, 1204
XapI RAATTY 4 cut(s) 367, 429, 465, 952
XbaI TCTAGA 1 cut(s) 559
XmaJI CCTAGG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.