Rroxscaffold_7G00177220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016094
Physical Location & Seq
Forward (+)
16755799 .. 16762740
6942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177220.1

Sequence Viewer

Length: 1215 bp
ATGGAAGTCCTACAACTTTATGAGCTCAGCTACTCTGATCTCCTTCTTGTGTCGTCAAACGATGTTTCACCGCCGTCACCGGAAGAGTTTGAAAGGGTGGAGTCAACTAGCAAAGCTATAATGGAAGCCCTAGGGCCCATGGGCCCAGGCTTGCTGTCGATCACCGGGGTCCCCAACGCCGCCGCTCTCCGCCGGAACCTCCTCCCTCTGGCTCGCAAGCTCGCCCTTCTGGAACCCAATCACCGCAAGCTCATTCTCAAGGATCACAAATTGGGGAGTGATGTGCCTTTGAAAAACCCAGAGAGAAATGTTTCATCTTTCGCTATGCAAATCAAATATTCACATGATATTGAAGATACCCAGTTGAATTCAGAGCATGAATCATTGTGTGGATTTGAGAATCTTGGAAATGGGTTTAGAGAGTTGGGAATTTGCATGATGGAGCTTGGTCTCAGACTAGCCAGAATTTGTGATAGAGCCATTGGTGGCCAAGAGCTTGAGCAGAGCTTATTGGAATCTGGGACTGCCAAAGCTCGGCTTATACACTATCATTCATTTCTAGAGAAAACCATTTTGGTTCAGGAAGCTAGACCCAAAAAGGCTGTTAATTCGAAGAGGATTCGGATTGGTGATGAAGATAAACGGTCAGGCGGAGATGATTCTAGTAATCTATGGCAACAGTGGCATTATGATTATGGGATTTTCACTGTGTTAACAGCTCCATTGTTTGTATTGGCTTCTAATGCACAAGCACCAGAAGAACAATGTGCTTACCCAAAAGGGCATACTTATTTGCAAGTATTTGATCCAAGCAAGAACAATGTGTTCATGGTGAAGGCTTCTCCTGAGAGTTTTATCATTCAGGTTGGAGAGTCGGCTGATATCATATCGCGAGGAAAGCTTCGTGCCACCCTTCATTCGGTTGCTAGACCTCCCAAGTTTGAAAATTTGAGCAGAGAAACTTTTGTTCTGTTCTTGCAGCCTGCTTGGAACAAAACTTTCTCTACTGAAGATTATCCCATGAACCAGATCTCAGGGACATCTTTTGAGGTAAAACGGGATGATGAGTTGGAAAGGAGTAGGCTAACTGAAGAAATACAGAAAATTGTACCACCTCTGGCGATGCGATTGAAGAATGGGATGACATTTGCAGATTTCTCGCGCGAAACCACCAAGCAATACTATGGTGGCACTGGTTTGCAGTCTAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy

Protein Analysis

404

Amino Acids

45.44

Weight (kDa)

6.19

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63290 AT3G63290
fragaria_vesca FvH4_2g23081
malus_domestica MD03G1259400.v1.1
prunus_persica Prupe.8G235900_v2.0.a1
pyrus_communis pycom03g20740
rosa_chinensis RchiOBHm_Chr6g0290231
rosa_laevigata RLG00000012232
rosa_roxburghii Rroxscaffold_7G00177220
rosa_rugosa Rorug06G0211100
rosa_samantha Rh6AG321400 Rh6BG328500 Rh6CG334500 Rh6DG321500
rosa_wichuraiana Rw6G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 185
AccII CGCG 3 cut(s) 892, 1162, 1164
AciI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
AclWI GGATC 2 cut(s) 270, 800
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 4 cut(s) 367, 429, 465, 946
AcuI CTGAAG 2 cut(s) 1029, 1110
AfaI GTAC 1 cut(s) 1110
AfiI CCNNNNNNNGG 3 cut(s) 208, 534, 919
AgsI TTSAA 6 cut(s) 92, 292, 353, 367, 944, 1132
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 270, 800
AoxI GGCC 3 cut(s) 134, 142, 487
ApaI GGGCCC 2 cut(s) 138, 146
ApeKI GCWGC 1 cut(s) 979
ApoI RAATTY 4 cut(s) 367, 429, 465, 946
Asp700I GAANNNNTTC 1 cut(s) 310
AspA2I CCTAGG 1 cut(s) 130
AspLEI GCGC 1 cut(s) 1164
AspS9I GGNCC 5 cut(s) 134, 135, 142, 143, 169
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 6 cut(s) 60, 69, 154, 233, 641, 844
AsuII TTCGAA 1 cut(s) 611
AvaII GGWCC 1 cut(s) 169
AvrII CCTAGG 1 cut(s) 130
BaeGI GKGCMC 2 cut(s) 138, 146
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 3 cut(s) 27, 138, 146
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 991
BccI CCATC 1 cut(s) 433
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 1140, 1174
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 927
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 3 cut(s) 180, 183, 980
BlnI CCTAGG 1 cut(s) 130
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 3 cut(s) 181, 184, 981
Bme1390I CCNGG 2 cut(s) 147, 166
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 5 cut(s) 134, 135, 142, 143, 169
BmiI GGNNCC 6 cut(s) 136, 144, 170, 171, 197, 234
BmrFI CCNGG 2 cut(s) 147, 166
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 1113
BmuI ACTGGG 1 cut(s) 355
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 611
BpuEI CTTGAG 2 cut(s) 242, 518
BpuMI CCSGG 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 130, 138, 145, 165
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 534, 919
Bse1I ACTGG 2 cut(s) 361, 1198
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 4 cut(s) 130, 138, 145, 165
BseGI GGATG 2 cut(s) 1066, 1146
BseLI CCNNNNNNNGG 3 cut(s) 208, 534, 919
BseMII CTCAG 4 cut(s) 40, 466, 837, 1047
BseNI ACTGG 2 cut(s) 361, 1198
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 2 cut(s) 138, 146
BseXI GCAGC 1 cut(s) 991
Bsh1236I CGCG 3 cut(s) 892, 1162, 1164
BshFI GGCC 3 cut(s) 136, 144, 489
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 3 cut(s) 80, 165, 193
BslFI GGGAC 3 cut(s) 155, 535, 1051
BslI CCNNNNNNNGG 3 cut(s) 208, 534, 919
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 3 cut(s) 155, 535, 1051
BsnI GGCC 3 cut(s) 136, 144, 489
Bso31I GGTCTC 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 611
Bsp120I GGGCCC 2 cut(s) 134, 142
Bsp1286I GDGCHC 3 cut(s) 27, 138, 146
Bsp143I GATC 5 cut(s) 37, 159, 262, 805, 1029
Bsp1720I GCTNAGC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 892
BspACI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
BspANI GGCC 3 cut(s) 136, 144, 489
BspCNI CTCAG 4 cut(s) 39, 465, 838, 1046
BspFNI CGCG 3 cut(s) 892, 1162, 1164
BspLI GGNNCC 6 cut(s) 136, 144, 170, 171, 197, 234
BspPI GGATC 2 cut(s) 270, 800
BspT104I TTCGAA 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 361, 1198
BssECI CCNNGG 4 cut(s) 130, 138, 145, 165
BssMI GATC 5 cut(s) 37, 159, 262, 805, 1029
BssT1I CCWWGG 2 cut(s) 130, 138
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 3 cut(s) 645, 681, 709
Bst6I CTCTTC 2 cut(s) 78, 608
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 6 cut(s) 152, 214, 218, 222, 248, 984
BstDEI CTNAG 4 cut(s) 26, 452, 846, 1033
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 1066, 1146
BstFNI CGCG 3 cut(s) 892, 1162, 1164
BstHHI GCGC 1 cut(s) 1164
BstKTI GATC 5 cut(s) 40, 162, 265, 808, 1032
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 5 cut(s) 37, 159, 262, 805, 1029
BstMWI GCNNNNNNNGC 3 cut(s) 682, 743, 898
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 164
BstSLI GKGCMC 2 cut(s) 138, 146
BstUI CGCG 3 cut(s) 892, 1162, 1164
BstV1I GCAGC 1 cut(s) 991
BstX2I RGATCY 1 cut(s) 1029
BstYI RGATCY 1 cut(s) 1029
BsuRI GGCC 3 cut(s) 136, 144, 489
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 1136
BtsCI GGATG 2 cut(s) 1066, 1146
BtsIMutI CAGTG 3 cut(s) 686, 705, 1191
BtuMI TCGCGA 1 cut(s) 892
Cac8I GCNNGC 6 cut(s) 152, 214, 218, 222, 248, 984
CfoI GCGC 1 cut(s) 1164
Cfr13I GGNCC 5 cut(s) 134, 135, 142, 143, 169
Csp6I GTAC 1 cut(s) 1109
CviAII CATG 6 cut(s) 139, 344, 377, 436, 829, 1021
CviQI GTAC 1 cut(s) 1109
DdeI CTNAG 4 cut(s) 26, 452, 846, 1033
DpnI GATC 5 cut(s) 39, 161, 264, 807, 1031
DpnII GATC 5 cut(s) 37, 159, 262, 805, 1029
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 78, 608
EarI CTCTTC 2 cut(s) 78, 608
EciI GGCGGA 2 cut(s) 179, 666
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 130, 138
Eco24I GRGCYC 3 cut(s) 27, 138, 146
Eco31I GGTCTC 1 cut(s) 455
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 1029, 1110
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 2 cut(s) 134, 169
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 883
EcoT14I CCWWGG 2 cut(s) 130, 138
EcoT38I GRGCYC 3 cut(s) 27, 138, 146
ErhI CCWWGG 2 cut(s) 130, 138
FaeI CATG 6 cut(s) 142, 347, 380, 439, 832, 1024
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 3 cut(s) 155, 535, 1051
FatI CATG 6 cut(s) 138, 343, 376, 435, 828, 1020
Fnu4HI GCNGC 3 cut(s) 180, 183, 980
FokI GGATG 2 cut(s) 1073, 1153
FriOI GRGCYC 3 cut(s) 27, 138, 146
Fsp4HI GCNGC 3 cut(s) 180, 183, 980
FspBI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 927
GlaI GCGC 1 cut(s) 1163
GluI GCNGC 3 cut(s) 180, 183, 980
HaeIII GGCC 3 cut(s) 136, 144, 489
HapII CCGG 3 cut(s) 80, 165, 193
HhaI GCGC 1 cut(s) 1164
Hin1II CATG 6 cut(s) 142, 347, 380, 439, 832, 1024
Hin6I GCGC 1 cut(s) 1162
HinP1I GCGC 1 cut(s) 1162
HincII GTYRAC 2 cut(s) 105, 714
HindII GTYRAC 2 cut(s) 105, 714
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 7 cut(s) 101, 380, 400, 515, 619, 659, 872
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 3 cut(s) 80, 165, 193
HphI GGTGA 6 cut(s) 60, 69, 154, 233, 641, 844
Hpy166II GTNNAC 2 cut(s) 105, 714
Hpy188I TCNGA 4 cut(s) 37, 373, 455, 624
Hpy188III TCNNGA 5 cut(s) 230, 560, 581, 845, 891
Hpy8I GTNNAC 2 cut(s) 105, 714
HpyAV CCTTC 4 cut(s) 53, 236, 829, 923
HpyCH4III ACNGT 3 cut(s) 645, 681, 709
HpyCH4V TGCA 7 cut(s) 328, 435, 746, 796, 979, 1151, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 682, 743, 898
HpyF3I CTNAG 4 cut(s) 26, 452, 846, 1033
Hsp92II CATG 6 cut(s) 142, 347, 380, 439, 832, 1024
HspAI GCGC 1 cut(s) 1162
KflI GGGWCCC 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 37, 159, 262, 805, 1029
LmnI GCTCC 2 cut(s) 442, 724
Lsp1109I GCAGC 1 cut(s) 991
LweI GCATC 1 cut(s) 1113
MaeI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 927
MaeIII GTNAC 1 cut(s) 75
MalI GATC 5 cut(s) 39, 161, 264, 807, 1031
MbiI CCGCTC 1 cut(s) 185
MboI GATC 5 cut(s) 37, 159, 262, 805, 1029
MboII GAAGA 8 cut(s) 95, 365, 625, 647, 770, 1022, 1103, 1144
MflI RGATCY 1 cut(s) 1029
MhlI GDGCHC 3 cut(s) 27, 138, 146
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 7 cut(s) 269, 367, 429, 465, 607, 946, 1104
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 2 cut(s) 110, 881
MmeI TCCRAC 2 cut(s) 847, 1050
MnlI CCTC 8 cut(s) 209, 212, 216, 609, 887, 942, 1042, 1125
Mox20I TGGCCA 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 489
MseI TTAA 2 cut(s) 606, 713
Msp20I TGGCCA 1 cut(s) 489
MspI CCGG 3 cut(s) 80, 165, 193
MspR9I CCNGG 2 cut(s) 147, 166
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 3 cut(s) 892, 1162, 1164
MwoI GCNNNNNNNGC 3 cut(s) 682, 743, 898
NciI CCSGG 1 cut(s) 166
NcoI CCATGG 1 cut(s) 138
NdeII GATC 5 cut(s) 37, 159, 262, 805, 1029
NlaIII CATG 6 cut(s) 142, 347, 380, 439, 832, 1024
NlaIV GGNNCC 6 cut(s) 136, 144, 170, 171, 197, 234
NmeAIII GCCGAG 1 cut(s) 514
NmuCI GTSAC 1 cut(s) 75
NruI TCGCGA 1 cut(s) 892
NspV TTCGAA 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 5 cut(s) 380, 400, 515, 619, 659
PkrI GCNGC 3 cut(s) 181, 184, 981
PleI GAGTC 2 cut(s) 109, 880
PpsI GAGTC 2 cut(s) 109, 880
PpuMI RGGWCCY 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 6 cut(s) 136, 144, 170, 171, 197, 234
PspOMI GGGCCC 2 cut(s) 134, 142
PspPI GGNCC 5 cut(s) 134, 135, 142, 143, 169
PspPPI RGGWCCY 1 cut(s) 169
PsuI RGATCY 1 cut(s) 1029
RruI TCGCGA 1 cut(s) 892
RsaI GTAC 1 cut(s) 1110
RsaNI GTAC 1 cut(s) 1109
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 606, 713
SatI GCNGC 3 cut(s) 180, 183, 980
Sau3AI GATC 5 cut(s) 37, 159, 262, 805, 1029
Sau96I GGNCC 5 cut(s) 134, 135, 142, 143, 169
SchI GAGTC 2 cut(s) 110, 881
ScrFI CCNGG 2 cut(s) 147, 166
SduI GDGCHC 3 cut(s) 27, 138, 146
SfaNI GCATC 1 cut(s) 1113
SfuI TTCGAA 1 cut(s) 611
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 2 cut(s) 257, 497
SmoI CTYRAG 2 cut(s) 257, 497
Sse9I AATT 7 cut(s) 269, 367, 429, 465, 607, 946, 1104
SsiI CCGC 6 cut(s) 71, 180, 183, 190, 244, 651
SspI AATATT 1 cut(s) 338
SspMI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 927
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 145, 164
StyI CCWWGG 2 cut(s) 130, 138
TaaI ACNGT 3 cut(s) 645, 681, 709
TaqI TCGA 2 cut(s) 158, 611
TasI AATT 7 cut(s) 269, 367, 429, 465, 607, 946, 1104
TauI GCSGC 2 cut(s) 182, 185
TfiI GAWTC 5 cut(s) 380, 400, 515, 619, 659
Tru1I TTAA 2 cut(s) 606, 713
Tru9I TTAA 2 cut(s) 606, 713
TscAI CASTG 3 cut(s) 686, 712, 1198
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 1 cut(s) 979
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 7 cut(s) 303, 393, 543, 648, 817, 905, 1037
TspRI CASTG 3 cut(s) 686, 712, 1198
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 4 cut(s) 367, 429, 465, 946
XbaI TCTAGA 1 cut(s) 559
XmaJI CCTAGG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 7 cut(s) 108, 131, 458, 560, 588, 663, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.