Prupe.8G235900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016094
Physical Location & Seq
Reverse (-)
20860884 .. 20862486
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G235900.1

Sequence Viewer

Length: 1245 bp
ATGGAAGAAGCGGAAGTTCTACAACTCTACGAGCTCAGCTACCCCGATCTCGTACTTGTGTCGTCCAACAATGTATCATTGTCGGCGGCGGAAGAGCTTGACAAGTTGCAGTCAACGAGCAAAGCCATAATGGAAGCCCTAGGGCCTGTGGGCCCAGGCCTGCTATCGATCACAGGCGTCCCCAACGCCGCCGCTCTCCGTCGTGACCTCCTCCCTCTCGCTCGCAAGCTCGCCCTTCTGAACCCAAACCATCGTAAAACTATCCTCAAGGATCACAAATTGGGGAGCGATGTGCCTTTGAAAAACCCTGAGAGAAATGTGTCATCTTTCGCAATGCAAATCAAATATTCACATGATTTTGATGAAACCCATTCGAATTCAGAGCATGGATCAACGATTGAGTTTGAGAATCTCGGAAATGGGTTTAGAGAGTTAGGGTTTTGCATGATGGAGCTTGGGCTCCAGCTTGCTCGAGTATGTGACAGAGCCATTGGTGGCAATGAGCTTGAGCAGAGCTTATTGGAATCTTGCACTGCCAAAGCTCGCCTCATTCACTACCATTCCCCAATTGATAAAACCATTCTTGTAAAAGAAGCTATGAGCACAAAGAGAACATCAAAAAGACCCTTAAATTCTAGCGGGAAACAGATTGGTGATGAACATAAACAACTTTCAGGGATTGGTTCTGATAATCTGTGGCAGCAATGGCATTATGATTATGGGATTTTCACTGTCTTAACAGCTCCAATGTTTCTGTTGCCTAATTCTGCACAAGAAGCAACAGAGGAAAGAGATGAAGAATGCCCCTATCCAAATGGGCATACTTATTTGCAAATATTTGATCCCATCAAGAATAATGTGTTCATGGTGAAGGCCTCTCATGAGAGTTTTATAGTTCAGGTTGGGGAGTCAGCTGATATCGTATCACGAGGAAAGCTTCGCGCCACCCTGCACTCTGTTGCTAGGCCTTCCAAGTTTGAAAACTTGAGCAGAGAGACTTTTGTTGTGTTCTTGCAGCCTGCATGGAACAAAACTTTCTCCATAACAGAGTATCCCATGAACTTGGGGATGTCGACGGAGATCAAAGAAGTCGATGAGCCAGAACAAAGTAGGCTCACTGAAGAAATACAGAAGATTGTACCACCTCTGGCATTGCGGTTGAAGGATGGGATGACATTTGCAGATTTCTCACGCGAAACCACCAAGCAATACTATGGTGGCATTGGTTTGCAGTCTAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy

Protein Analysis

415

Amino Acids

46.37

Weight (kDa)

5.71

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63290 AT3G63290
fragaria_vesca FvH4_2g23081
malus_domestica MD03G1259400.v1.1
prunus_persica Prupe.8G235900_v2.0.a1
pyrus_communis pycom03g20740
rosa_chinensis RchiOBHm_Chr6g0290231
rosa_laevigata RLG00000012232
rosa_roxburghii Rroxscaffold_7G00177220
rosa_rugosa Rorug06G0211100
rosa_samantha Rh6AG321400 Rh6BG328500 Rh6CG334500 Rh6DG321500
rosa_wichuraiana Rw6G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 1073
AccII CGCG 2 cut(s) 942, 1194
AciI CCGC 7 cut(s) 11, 86, 89, 189, 192, 639, 1156
AclWI GGATC 3 cut(s) 279, 397, 836
AcsI RAATTY 2 cut(s) 376, 631
AcuI CTGAAG 1 cut(s) 1140
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 2 cut(s) 54, 1140
AgsI TTSAA 3 cut(s) 301, 980, 1162
AjnI CCWGG 1 cut(s) 154
Alw21I GWGCWC 2 cut(s) 36, 605
Alw26I GTCTC 1 cut(s) 989
AlwI GGATC 3 cut(s) 279, 397, 836
Ama87I CYCGRG 1 cut(s) 471
AoxI GGCC 5 cut(s) 143, 151, 157, 873, 965
ApaI GGGCCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 700, 1015
ApoI RAATTY 2 cut(s) 376, 631
AspA2I CCTAGG 1 cut(s) 139
AspLEI GCGC 1 cut(s) 944
AspS9I GGNCC 3 cut(s) 143, 151, 152
AsuHPI GGTGA 2 cut(s) 665, 880
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 471
AvrII CCTAGG 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 155
BanII GRGCYC 3 cut(s) 36, 155, 462
BauI CACGAG 1 cut(s) 927
Bbv12I GWGCWC 2 cut(s) 36, 605
BbvI GCAGC 2 cut(s) 712, 1027
BccI CCATC 4 cut(s) 258, 442, 854, 1160
BciT130I CCWGG 1 cut(s) 156
BciVI GTATCC 1 cut(s) 1062
BcoDI GTCTC 1 cut(s) 989
BfaI CTAG 3 cut(s) 140, 636, 963
BfuI GTATCC 1 cut(s) 1062
BisI GCNGC 5 cut(s) 87, 189, 192, 701, 1016
BlnI CCTAGG 1 cut(s) 139
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 5 cut(s) 88, 190, 193, 702, 1017
Bme1390I CCNGG 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 471
BmgT120I GGNCC 3 cut(s) 143, 151, 152
BmiI GGNNCC 2 cut(s) 153, 461
BmrFI CCNGG 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 446
Bpu1102I GCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 3 cut(s) 251, 527, 1006
Bsa29I ATCGAT 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 139, 154
Bse3DI GCAATG 4 cut(s) 339, 505, 710, 1151
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 139, 154
BseGI GGATG 3 cut(s) 1074, 1171, 1176
BseMI GCAATG 4 cut(s) 339, 505, 710, 1151
BseMII CTCAG 2 cut(s) 49, 300
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 2 cut(s) 712, 1027
BsgI GTGCAG 2 cut(s) 753, 935
Bsh1236I CGCG 2 cut(s) 942, 1194
BshFI GGCC 5 cut(s) 145, 153, 159, 875, 967
BshVI ATCGAT 1 cut(s) 167
BsiHKAI GWGCWC 2 cut(s) 36, 605
BsiHKCI CYCGRG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 989
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 806
BsnI GGCC 5 cut(s) 145, 153, 159, 875, 967
BsoBI CYCGRG 1 cut(s) 471
Bsp119I TTCGAA 1 cut(s) 374
Bsp120I GGGCCC 1 cut(s) 151
Bsp1286I GDGCHC 4 cut(s) 36, 155, 462, 605
Bsp143I GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 7 cut(s) 11, 86, 89, 189, 192, 639, 1156
BspANI GGCC 5 cut(s) 145, 153, 159, 875, 967
BspCNI CTCAG 2 cut(s) 48, 301
BspDI ATCGAT 1 cut(s) 167
BspFNI CGCG 2 cut(s) 942, 1194
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 2 cut(s) 153, 461
BspPI GGATC 3 cut(s) 279, 397, 836
BspQI GCTCTTC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 4 cut(s) 339, 505, 710, 1151
BssECI CCNNGG 2 cut(s) 139, 154
BssMI GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 733
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 7 cut(s) 161, 223, 227, 231, 468, 544, 1020
BstDEI CTNAG 2 cut(s) 35, 309
BstF5I GGATG 3 cut(s) 1074, 1171, 1176
BstFNI CGCG 2 cut(s) 942, 1194
BstHHI GCGC 1 cut(s) 944
BstKTI GATC 6 cut(s) 49, 171, 274, 392, 844, 1083
BstMAI GTCTC 1 cut(s) 989
BstMBI GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
BstMWI GCNNNNNNNGC 2 cut(s) 706, 776
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 155
BstUI CGCG 2 cut(s) 942, 1194
BstV1I GCAGC 2 cut(s) 712, 1027
BstXI CCANNNNNNTGG 1 cut(s) 1063
Bsu15I ATCGAT 1 cut(s) 167
BsuI GTATCC 1 cut(s) 1062
BsuRI GGCC 5 cut(s) 145, 153, 159, 875, 967
BsuTUI ATCGAT 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 3 cut(s) 1074, 1171, 1176
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 3 cut(s) 531, 729, 1116
Cac8I GCNNGC 7 cut(s) 161, 223, 227, 231, 468, 544, 1020
CciI TCATGA 1 cut(s) 880
CfoI GCGC 1 cut(s) 944
Cfr13I GGNCC 3 cut(s) 143, 151, 152
ClaI ATCGAT 1 cut(s) 167
CseI GACGC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 53, 1139
CviAII CATG 7 cut(s) 353, 386, 445, 865, 881, 1023, 1057
CviQI GTAC 2 cut(s) 53, 1139
DdeI CTNAG 2 cut(s) 35, 309
DpnI GATC 6 cut(s) 48, 170, 273, 391, 843, 1082
DpnII GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 3 cut(s) 159, 875, 967
Eco24I GRGCYC 3 cut(s) 36, 155, 462
Eco32I GATATC 1 cut(s) 919
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 1140
Eco88I CYCGRG 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 919
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 3 cut(s) 36, 155, 462
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 7 cut(s) 356, 389, 448, 868, 884, 1026, 1060
FaqI GGGAC 1 cut(s) 164
FatI CATG 7 cut(s) 352, 385, 444, 864, 880, 1022, 1056
FauI CCCGC 1 cut(s) 632
FblI GTMKAC 1 cut(s) 1073
Fnu4HI GCNGC 5 cut(s) 87, 189, 192, 701, 1016
FokI GGATG 3 cut(s) 1081, 1178, 1183
FriOI GRGCYC 3 cut(s) 36, 155, 462
Fsp4HI GCNGC 5 cut(s) 87, 189, 192, 701, 1016
FspBI CTAG 3 cut(s) 140, 636, 963
GlaI GCGC 1 cut(s) 943
GluI GCNGC 5 cut(s) 87, 189, 192, 701, 1016
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 5 cut(s) 145, 153, 159, 875, 967
HgaI GACGC 1 cut(s) 166
HhaI GCGC 1 cut(s) 944
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 7 cut(s) 356, 389, 448, 868, 884, 1026, 1060
Hin6I GCGC 1 cut(s) 942
HinP1I GCGC 1 cut(s) 942
HincII GTYRAC 2 cut(s) 114, 1074
HindII GTYRAC 2 cut(s) 114, 1074
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 3 cut(s) 409, 524, 908
HphI GGTGA 2 cut(s) 665, 880
Hpy166II GTNNAC 2 cut(s) 114, 1074
Hpy188I TCNGA 4 cut(s) 240, 382, 416, 688
Hpy188III TCNNGA 4 cut(s) 203, 850, 881, 927
Hpy8I GTNNAC 2 cut(s) 114, 1074
Hpy99I CGWCG 2 cut(s) 204, 1078
HpyAV CCTTC 4 cut(s) 245, 865, 978, 1156
HpyCH4III ACNGT 1 cut(s) 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 706, 776
HpyF3I CTNAG 2 cut(s) 35, 309
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 7 cut(s) 356, 389, 448, 868, 884, 1026, 1060
HspAI GCGC 1 cut(s) 942
Kzo9I GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 4 cut(s) 285, 451, 465, 748
Lsp1109I GCAGC 2 cut(s) 712, 1027
MaeI CTAG 3 cut(s) 140, 636, 963
MaeIII GTNAC 2 cut(s) 203, 479
MalI GATC 6 cut(s) 48, 170, 273, 391, 843, 1082
MbiI CCGCTC 1 cut(s) 194
MboI GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
MboII GAAGA 5 cut(s) 17, 104, 809, 1133, 1144
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 4 cut(s) 36, 155, 462, 605
MluCI AATT 5 cut(s) 278, 376, 567, 631, 763
MlyI GAGTC 1 cut(s) 917
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 9 cut(s) 218, 221, 225, 275, 557, 778, 886, 923, 1155
MseI TTAA 2 cut(s) 629, 737
MspA1I CMGCKG 1 cut(s) 914
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 806
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 2 cut(s) 942, 1194
MwoI GCNNNNNNNGC 2 cut(s) 706, 776
NdeII GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
NlaIII CATG 7 cut(s) 356, 389, 448, 868, 884, 1026, 1060
NlaIV GGNNCC 2 cut(s) 153, 461
NmuCI GTSAC 2 cut(s) 203, 479
NspV TTCGAA 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 471
PagI TCATGA 1 cut(s) 880
PceI AGGCCT 3 cut(s) 159, 875, 967
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 1 cut(s) 806
PfeI GAWTC 2 cut(s) 409, 524
PkrI GCNGC 5 cut(s) 88, 190, 193, 702, 1017
PleI GAGTC 1 cut(s) 916
PpsI GAGTC 1 cut(s) 916
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 153, 461
PspOMI GGGCCC 1 cut(s) 151
PspPI GGNCC 3 cut(s) 143, 151, 152
PspXI VCTCGAGB 1 cut(s) 471
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 2 cut(s) 54, 1140
RsaNI GTAC 2 cut(s) 53, 1139
SacI GAGCTC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 1072
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 629, 737
SatI GCNGC 5 cut(s) 87, 189, 192, 701, 1016
Sau3AI GATC 6 cut(s) 46, 168, 271, 389, 841, 1080
Sau96I GGNCC 3 cut(s) 143, 151, 152
SchI GAGTC 1 cut(s) 917
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 4 cut(s) 36, 155, 462, 605
Sfr274I CTCGAG 1 cut(s) 471
SfuI TTCGAA 1 cut(s) 374
SlaI CTCGAG 1 cut(s) 471
SmlI CTYRAG 4 cut(s) 266, 471, 506, 985
SmoI CTYRAG 4 cut(s) 266, 471, 506, 985
Sse9I AATT 5 cut(s) 278, 376, 567, 631, 763
SseBI AGGCCT 3 cut(s) 159, 875, 967
SsiI CCGC 7 cut(s) 11, 86, 89, 189, 192, 639, 1156
SspI AATATT 2 cut(s) 347, 837
SspMI CTAG 3 cut(s) 140, 636, 963
SstI GAGCTC 1 cut(s) 36
StuI AGGCCT 3 cut(s) 159, 875, 967
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 733
TaqI TCGA 5 cut(s) 167, 374, 472, 1073, 1092
TasI AATT 5 cut(s) 278, 376, 567, 631, 763
TauI GCSGC 3 cut(s) 89, 191, 194
TfiI GAWTC 2 cut(s) 409, 524
Tru1I TTAA 2 cut(s) 629, 737
Tru9I TTAA 2 cut(s) 629, 737
TscAI CASTG 3 cut(s) 538, 736, 1123
TseFI GTSAC 2 cut(s) 203, 479
TseI GCWGC 2 cut(s) 700, 1015
Tsp45I GTSAC 2 cut(s) 203, 479
TspDTI ATGAA 5 cut(s) 378, 672, 810, 853, 1073
TspGWI ACGGA 2 cut(s) 188, 1091
TspRI CASTG 3 cut(s) 538, 736, 1123
XapI RAATTY 2 cut(s) 376, 631
XhoI CTCGAG 1 cut(s) 471
XmaJI CCTAGG 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 1073
XspI CTAG 3 cut(s) 140, 636, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.