FvH4_2g23720

protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
19422064 .. 19425359
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23720.t1

Sequence Viewer

Length: 1296 bp
ATGACCCAGTTGGAGTTGTTCAAGAAAATCAAGCGCTTCAATCCTCTAGAGCCTTCTCTAAGCATTCTTGGGTTTTTCTTGGTCACTGTTCTGCTCATTGGGTGCTTCTTCTACTTGGATTACCGCACAGTTGTCCATGGGATTCGCTCTCGTCTTTTGCATGGTTCAGGTGGGAAAGCACGGTCAGGGTTTCTTGATCAGGGGAATGAAGGGTGTGATGTGTTTGATGGGAACTGGGTTTGGGATGAGAGCTATCCTTTGTATCAGTCTCAGAATTGCTCCTTTTTGGATGGAGGGTTTAGGTGTTCTGAGAATGGGAGACCTGACAGCTTCTATACCAAGTGGCGTTGGCAACCCAAAGATTGCAACTTGCCCAGATTCGATGCAGGGATGATGTTGGAAAAGCTTCGAAATCGACGTCTTGTATTTGCCGGTGACTCGATTGGAAGGAACCAGTGGGAGTCTCTTCTCTGCATGCTCTCTTCTGTAATTCCTAACAAGACTTCAATCTATGAGGTGAATGGGACGCCAATTACGAAGCACTCAGGCTTTTTGGTCTTCAAGTTTGAGGACTTCAACTGCACAGTGGAATACTACAGGTCACCATTTCTAGTCTTTCAGGGCCATCCTCCAGCTGGTGCCCCAGAGGAGGTGAAGATGACTTTAAAAGTGGATCAAATGGACTGGCTTTCCCTCCACTGGAGGGATGCGGATGTGCTAGTCTTGAATTCCGGGCATTGGTGGAATTATGGGAAGACCATTAGAGAGGGCTGCTACTTTCAAGAAGGGGAGGAGATAAAGATGAATATGACTGTTAATACTGCATACCGGAAATCAATGGAAACTTTGATCGATTGGATTGATAGTGAAGTCAACATGAGCAAGACTTATGTACTTTTTCGAACTTATGCTCCTGTGCATTTCAGTGGTGGTGATTGGAATTCTGGTGGTGGCTGTCACTTGGAGACTCTACCTGGATTAGGCCCATTGCCTGTTTTATCTGACAGTGTTTACACGACTATCTTTGATGTGTTATCTGAGCGATCAAATGAGTCACACGTAGGAAAAGTCGATTTTCTGAATGTAACAAACATGTCTCTGTGGAGAAAAGATGCCCATGCTTCTCTGTACTATTTAGGGCCAGATGGACCAGCCTCAATCAACCATCAAGACTGCAGCCACTGGTGCCTACCTGGCGTCCCTGATTCATGGAATGAACTTCTTTATGCCCTTTTCCTTAAACAGGAATCCATTCGCTCAGGAAATTCAACCAAATCTTCCCAGTTTCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

432

Amino Acids

49.24

Weight (kDa)

5.96

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 71 - 123 1.4e-22 PMR5 N terminal Domain
PC-Esterase PF13839 124 - 410 1.1e-95 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015547)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 421
AccB1I GGYRCC 2 cut(s) 638, 1185
AciI CCGC 2 cut(s) 124, 710
AclWI GGATC 1 cut(s) 681
AcsI RAATTY 3 cut(s) 727, 940, 1264
AcyI GRCGYC 3 cut(s) 418, 527, 1197
AfaI GTAC 2 cut(s) 894, 1130
AfeI AGCGCT 1 cut(s) 35
AfiI CCNNNNNNNGG 7 cut(s) 635, 649, 699, 703, 738, 980, 1243
AflIII ACRYGT 2 cut(s) 1057, 1092
AgsI TTSAA 8 cut(s) 22, 40, 507, 562, 577, 727, 782, 1269
AjnI CCWGG 2 cut(s) 973, 1192
AloI GAACNNNNNNTCC 2 cut(s) 895, 927
AluBI AGCT 4 cut(s) 252, 330, 406, 635
AluI AGCT 4 cut(s) 252, 330, 406, 635
Alw26I GTCTC 5 cut(s) 273, 313, 468, 959, 1101
AlwI GGATC 1 cut(s) 681
AlwNI CAGNNNCTG 1 cut(s) 1182
Aor51HI AGCGCT 1 cut(s) 35
AoxI GGCC 3 cut(s) 622, 982, 1139
ApeKI GCWGC 2 cut(s) 771, 1176
ApoI RAATTY 3 cut(s) 727, 940, 1264
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
Asp700I GAANNNNTTC 2 cut(s) 405, 1251
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 4 cut(s) 622, 983, 1139, 1148
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 5 cut(s) 446, 529, 594, 664, 944
AsuII TTCGAA 2 cut(s) 409, 901
AvaII GGWCC 1 cut(s) 1148
BaeGI GKGCMC 1 cut(s) 643
BanI GGYRCC 2 cut(s) 638, 1185
BbsI GAAGAC 2 cut(s) 550, 761
BbvI GCAGC 2 cut(s) 758, 1188
BccI CCATC 5 cut(s) 221, 284, 633, 1139, 1173
BciT130I CCWGG 2 cut(s) 975, 1194
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 733
BcoDI GTCTC 5 cut(s) 273, 313, 468, 959, 1101
BfaI CTAG 3 cut(s) 47, 611, 719
BfmI CTRYAG 2 cut(s) 595, 1174
BfoI RGCGCY 1 cut(s) 37
BglI GCCNNNNNGGC 1 cut(s) 1194
BisI GCNGC 2 cut(s) 772, 1177
BlsI GCNGC 2 cut(s) 773, 1178
Bme1390I CCNGG 3 cut(s) 733, 975, 1194
Bme18I GGWCC 1 cut(s) 1148
BmgT120I GGNCC 4 cut(s) 622, 983, 1139, 1148
BmiI GGNNCC 3 cut(s) 452, 640, 1187
BmrFI CCNGG 3 cut(s) 733, 975, 1194
BmrI ACTGGG 2 cut(s) 244, 1276
BmsI GCATC 3 cut(s) 373, 697, 1102
BmuI ACTGGG 2 cut(s) 244, 1276
BpiI GAAGAC 2 cut(s) 550, 761
BpmI CTGGAG 2 cut(s) 615, 721
Bpu10I CCTNAGC 1 cut(s) 1258
Bpu14I TTCGAA 2 cut(s) 409, 901
BpuMI CCSGG 1 cut(s) 733
Bsa29I ATCGAT 1 cut(s) 852
BsaAI YACGTR 1 cut(s) 1060
BsaHI GRCGYC 3 cut(s) 418, 527, 1197
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 828
BsaXI ACNNNNNCTCC 2 cut(s) 895, 925
Bsc4I CCNNNNNNNGG 7 cut(s) 635, 649, 699, 703, 738, 980, 1243
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 7 cut(s) 7, 239, 454, 689, 704, 1187, 1282
Bse3DI GCAATG 1 cut(s) 986
BseBI CCWGG 2 cut(s) 975, 1194
BseCI ATCGAT 1 cut(s) 852
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 6 cut(s) 250, 295, 396, 625, 712, 718
BseLI CCNNNNNNNGG 7 cut(s) 635, 649, 699, 703, 738, 980, 1243
BseMI GCAATG 1 cut(s) 986
BseMII CTCAG 5 cut(s) 284, 300, 558, 1029, 1272
BseNI ACTGG 7 cut(s) 7, 239, 454, 689, 704, 1187, 1282
BseRI GAGGAG 2 cut(s) 662, 806
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 2 cut(s) 758, 1188
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 3 cut(s) 624, 984, 1141
BshNI GGYRCC 2 cut(s) 638, 1185
BshVI ATCGAT 1 cut(s) 852
BsiSI CCGG 3 cut(s) 432, 732, 829
BslFI GGGAC 2 cut(s) 538, 1184
BslI CCNNNNNNNGG 7 cut(s) 635, 649, 699, 703, 738, 980, 1243
BsmAI GTCTC 5 cut(s) 273, 313, 468, 959, 1101
BsmFI GGGAC 2 cut(s) 538, 1184
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 3 cut(s) 624, 984, 1141
Bso31I GGTCTC 1 cut(s) 313
Bsp119I TTCGAA 2 cut(s) 409, 901
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 4 cut(s) 196, 673, 849, 1043
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 2 cut(s) 124, 710
BspANI GGCC 3 cut(s) 624, 984, 1141
BspCNI CTCAG 5 cut(s) 283, 301, 557, 1030, 1271
BspDI ATCGAT 1 cut(s) 852
BspLI GGNNCC 3 cut(s) 452, 640, 1187
BspMAI CTGCAG 1 cut(s) 1178
BspPI GGATC 1 cut(s) 681
BspT104I TTCGAA 2 cut(s) 409, 901
BspT107I GGYRCC 2 cut(s) 638, 1185
BspTNI GGTCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 986
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 7 cut(s) 7, 239, 454, 689, 704, 1187, 1282
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 4 cut(s) 196, 673, 849, 1043
BssNI GRCGYC 3 cut(s) 418, 527, 1197
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 975, 1194
Bst4CI ACNGT 6 cut(s) 88, 130, 183, 586, 814, 1007
Bst6I CTCTTC 2 cut(s) 471, 487
BstACI GRCGYC 3 cut(s) 418, 527, 1197
BstBAI YACGTR 1 cut(s) 1060
BstBI TTCGAA 2 cut(s) 409, 901
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 6 cut(s) 59, 270, 309, 544, 1038, 1258
BstDSI CCRYGG 1 cut(s) 136
BstEII GGTNACC 1 cut(s) 600
BstENI CCTNNNNNAGG 2 cut(s) 978, 1241
BstF5I GGATG 6 cut(s) 250, 295, 396, 625, 712, 718
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 4 cut(s) 199, 676, 852, 1046
BstMAI GTCTC 5 cut(s) 273, 313, 468, 959, 1101
BstMBI GATC 4 cut(s) 196, 673, 849, 1043
BstMWI GCNNNNNNNGC 2 cut(s) 1185, 1194
BstNI CCWGG 2 cut(s) 975, 1194
BstNSI RCATGY 2 cut(s) 478, 1096
BstPI GGTNACC 1 cut(s) 600
BstSCI CCNGG 3 cut(s) 731, 973, 1192
BstSFI CTRYAG 2 cut(s) 595, 1174
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 2 cut(s) 758, 1188
BstV2I GAAGAC 2 cut(s) 550, 761
Bsu15I ATCGAT 1 cut(s) 852
BsuRI GGCC 3 cut(s) 624, 984, 1141
BsuTUI ATCGAT 1 cut(s) 852
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 6 cut(s) 250, 295, 396, 625, 712, 718
BtsIMutI CAGTG 7 cut(s) 84, 461, 591, 697, 931, 1012, 1180
Cac8I GCNNGC 1 cut(s) 476
CaiI CAGNNNCTG 1 cut(s) 1182
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 4 cut(s) 622, 983, 1139, 1148
ClaI ATCGAT 1 cut(s) 852
CseI GACGC 2 cut(s) 535, 1186
Csp6I GTAC 2 cut(s) 893, 1129
CviAII CATG 7 cut(s) 137, 161, 475, 877, 1093, 1118, 1209
CviQI GTAC 2 cut(s) 893, 1129
DdeI CTNAG 6 cut(s) 59, 270, 309, 544, 1038, 1258
DpnI GATC 4 cut(s) 198, 675, 851, 1045
DpnII GATC 4 cut(s) 196, 673, 849, 1043
DraI TTTAAA 1 cut(s) 666
Eam1104I CTCTTC 2 cut(s) 471, 487
EarI CTCTTC 2 cut(s) 471, 487
Eco130I CCWWGG 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 1148
Eco47III AGCGCT 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 600
EcoNI CCTNNNNNAGG 2 cut(s) 978, 1241
EcoO65I GGTNACC 1 cut(s) 600
EcoRI GAATTC 2 cut(s) 727, 940
EcoRII CCWGG 2 cut(s) 973, 1192
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 7 cut(s) 140, 164, 478, 880, 1096, 1121, 1212
FaqI GGGAC 2 cut(s) 538, 1184
FatI CATG 7 cut(s) 136, 160, 474, 876, 1092, 1117, 1208
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 772, 1177
FokI GGATG 6 cut(s) 257, 302, 403, 612, 719, 725
Fsp4HI GCNGC 2 cut(s) 772, 1177
FspBI CTAG 3 cut(s) 47, 611, 719
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 772, 1177
GsuI CTGGAG 2 cut(s) 615, 721
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 3 cut(s) 624, 984, 1141
HapII CCGG 3 cut(s) 432, 732, 829
HgaI GACGC 2 cut(s) 535, 1186
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 3 cut(s) 418, 527, 1197
Hin1II CATG 7 cut(s) 140, 164, 478, 880, 1096, 1121, 1212
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 8 cut(s) 142, 378, 437, 461, 967, 1052, 1205, 1247
HpaII CCGG 3 cut(s) 432, 732, 829
HphI GGTGA 5 cut(s) 446, 529, 594, 664, 944
Hpy166II GTNNAC 2 cut(s) 874, 1012
Hpy188I TCNGA 5 cut(s) 273, 310, 1003, 1039, 1080
Hpy188III TCNNGA 7 cut(s) 22, 47, 194, 724, 782, 1169, 1260
Hpy8I GTNNAC 2 cut(s) 874, 1012
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 4 cut(s) 63, 203, 441, 779
HpyCH4III ACNGT 6 cut(s) 88, 130, 183, 586, 814, 1007
HpyCH4IV ACGT 2 cut(s) 418, 1059
HpyCH4V TGCA 8 cut(s) 160, 366, 386, 474, 582, 824, 919, 1176
HpyF10VI GCNNNNNNNGC 2 cut(s) 1185, 1194
HpyF3I CTNAG 6 cut(s) 59, 270, 309, 544, 1038, 1258
HpySE526I ACGT 2 cut(s) 418, 1059
Hsp92I GRCGYC 3 cut(s) 418, 527, 1197
Hsp92II CATG 7 cut(s) 140, 164, 478, 880, 1096, 1121, 1212
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 4 cut(s) 196, 673, 849, 1043
LmnI GCTCC 2 cut(s) 284, 916
Lsp1109I GCAGC 2 cut(s) 758, 1188
LweI GCATC 3 cut(s) 373, 697, 1102
MaeI CTAG 3 cut(s) 47, 611, 719
MaeII ACGT 2 cut(s) 418, 1059
MaeIII GTNAC 6 cut(s) 82, 434, 600, 956, 1053, 1084
MalI GATC 4 cut(s) 198, 675, 851, 1045
MboI GATC 4 cut(s) 196, 673, 849, 1043
MboII GAAGA 7 cut(s) 100, 458, 474, 550, 667, 766, 1269
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 7 cut(s) 274, 489, 531, 727, 745, 940, 1264
MlyI GAGTC 4 cut(s) 431, 470, 961, 1061
MmeI TCCRAC 1 cut(s) 378
MroXI GAANNNNTTC 2 cut(s) 405, 1251
MseI TTAA 3 cut(s) 665, 816, 1239
MslI CAYNNNNRTG 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 3 cut(s) 432, 732, 829
MspR9I CCNGG 3 cut(s) 733, 975, 1194
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 2 cut(s) 975, 1194
MwoI GCNNNNNNNGC 2 cut(s) 1185, 1194
NciI CCSGG 1 cut(s) 733
NcoI CCATGG 1 cut(s) 136
NdeII GATC 4 cut(s) 196, 673, 849, 1043
NlaIII CATG 7 cut(s) 140, 164, 478, 880, 1096, 1121, 1212
NlaIV GGNNCC 3 cut(s) 452, 640, 1187
NmuCI GTSAC 5 cut(s) 82, 434, 600, 956, 1053
NspI RCATGY 2 cut(s) 478, 1096
NspV TTCGAA 2 cut(s) 409, 901
PaeI GCATGC 1 cut(s) 478
PciI ACATGT 1 cut(s) 1092
PcsI WCGNNNNNNNCGW 2 cut(s) 415, 533
PctI GAATGC 1 cut(s) 63
PdmI GAANNNNTTC 2 cut(s) 405, 1251
PfeI GAWTC 4 cut(s) 142, 378, 1205, 1247
PkrI GCNGC 2 cut(s) 773, 1178
PleI GAGTC 4 cut(s) 431, 469, 961, 1060
PpsI GAGTC 4 cut(s) 431, 469, 961, 1060
Ppu21I YACGTR 1 cut(s) 1060
PscI ACATGT 1 cut(s) 1092
Psp6I CCWGG 2 cut(s) 973, 1192
PspEI GGTNACC 1 cut(s) 600
PspGI CCWGG 2 cut(s) 973, 1192
PspN4I GGNNCC 3 cut(s) 452, 640, 1187
PspPI GGNCC 4 cut(s) 622, 983, 1139, 1148
PstI CTGCAG 1 cut(s) 1178
PstNI CAGNNNCTG 1 cut(s) 1182
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 894, 1130
RsaNI GTAC 2 cut(s) 893, 1129
RseI CAYNNNNRTG 1 cut(s) 924
SaqAI TTAA 3 cut(s) 665, 816, 1239
SatI GCNGC 2 cut(s) 772, 1177
Sau3AI GATC 4 cut(s) 196, 673, 849, 1043
Sau96I GGNCC 4 cut(s) 622, 983, 1139, 1148
SchI GAGTC 4 cut(s) 431, 470, 961, 1061
ScrFI CCNGG 3 cut(s) 733, 975, 1194
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 3 cut(s) 373, 697, 1102
SfcI CTRYAG 2 cut(s) 595, 1174
SfuI TTCGAA 2 cut(s) 409, 901
SinI GGWCC 1 cut(s) 1148
SmiMI CAYNNNNRTG 1 cut(s) 924
SphI GCATGC 1 cut(s) 478
Sse9I AATT 7 cut(s) 274, 489, 531, 727, 745, 940, 1264
SsiI CCGC 2 cut(s) 124, 710
SspMI CTAG 3 cut(s) 47, 611, 719
StyD4I CCNGG 3 cut(s) 731, 973, 1192
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 6 cut(s) 88, 130, 183, 586, 814, 1007
TaiI ACGT 2 cut(s) 421, 1062
TaqI TCGA 7 cut(s) 381, 409, 415, 440, 852, 901, 1071
TasI AATT 7 cut(s) 274, 489, 531, 727, 745, 940, 1264
TatI WGTACW 2 cut(s) 892, 1128
TfiI GAWTC 4 cut(s) 142, 378, 1205, 1247
Tru1I TTAA 3 cut(s) 665, 816, 1239
Tru9I TTAA 3 cut(s) 665, 816, 1239
TscAI CASTG 7 cut(s) 91, 461, 591, 704, 931, 1012, 1187
TseFI GTSAC 5 cut(s) 82, 434, 600, 956, 1053
TseI GCWGC 2 cut(s) 771, 1176
Tsp45I GTSAC 5 cut(s) 82, 434, 600, 956, 1053
TspDTI ATGAA 4 cut(s) 222, 818, 1197, 1230
TspRI CASTG 7 cut(s) 91, 461, 591, 704, 931, 1012, 1187
VpaK11BI GGWCC 1 cut(s) 1148
XagI CCTNNNNNAGG 2 cut(s) 978, 1241
XapI RAATTY 3 cut(s) 727, 940, 1264
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 2 cut(s) 478, 1096
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmnI GAANNNNTTC 2 cut(s) 405, 1251
XspI CTAG 3 cut(s) 47, 611, 719
ZraI GACGTC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.