Rh6CG342800

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015547
Physical Location & Seq
Reverse (-)
53388952 .. 53393359
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG342800.1

Sequence Viewer

Length: 1011 bp
ATGACCCACTTGGAGTTCTTCAAGAAAATCAAGCGCTTCAATCCTCTAGAGCCTTCTCTGGGCATTCTTGGCTTCTTCTTGGTCACTGTTTTACTCATTGGGTGCTTCTCCTACTTGGACTACCGCACAGTTGTCCATGGGATTCGCTCTCATCTTTTGCATGGTTCATCTCCTGGTAGGAAAGCACGGTCAGGATTTCTTGATCAGGGGAATGAAGGGTGTGATGTGTTTGATGGGAATTGGGTTTGGGATGAGAGCTATCCTCTTTATCAGTCCCAGAATTGCTCATTTTTAGATGGAGGGTTTAGGTGTACTGAGAATGGGAGGCCTGATAGCTTCTATACCAAGTGGCGTTGGCAACCCAAAGATTGCAACTTGCCCAGATTTGATGCAGGGATGATGTTGGAAAAGCTTCGAAACCGACGTCTTGTATTTGCTGGTGACTCGATTGGAAGGAACCAGTGGGAGTCTCTTCTCTGCATGCTCTCTTCTGTAATTCCTAACAAGACTTCAATCTATGAGGTGAATGGGAAGCCAATCACGAAGCACTCAGGGTTTTTGGTCTTTAAGTTTGAGGACTTCAACTGCACAGTGGAGTACTACAGGTCACCTTTTCTAGTCTTTCAGGGCCATCCTCCGGCTGGCGCCCCTGAGGAGGTGAAGTTGGCTTTAAAAGTGGATAAAATGGACTGGATTTCCCGCCACTGGAGGGATGCAGATGTGCTGGTTTTGAATGCTGGGCACTGGTGGAATTATGGGAAGACCATAAGAGAGGGCTGCTACTTTCAAGAAGGGGAGCAGATAAAGATGAATATGACTGTTAAAACTGCATACCAGAGATCAATGGAAACTTTGCTTGATTGGATTGATAGTGAAGTCAACATAAGCAAGACTTATGTACTTTTTCGAACTTATGCTCCTGTGCATTTCAGGTTTGCTCTATCATTTAAGTTGCTTAGTCTCATTGGTAGATTATTATTTGCTTCTTTGTCGCATCAAATTTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

336

Amino Acids

38.96

Weight (kDa)

8.8

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 73 - 125 7.2e-23 PMR5 N terminal Domain
PC-Esterase PF13839 126 - 311 3.3e-61 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015547)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23720
malus_domestica MD03G1266900.v1.1 MD11G1287300.v1.1
prunus_persica Prupe.8G242600_v2.0.a1
pyrus_communis pycom03g21320 pycom11g25470
rosa_chinensis RchiOBHm_Chr6g0291221
rosa_laevigata RLG00000012132
rosa_multiflora Rmu_sc0013203.1_g000020
rosa_roxburghii Rroxscaffold_7G00176240
rosa_rugosa Rorug06G0218500
rosa_samantha Rh6AG329300 Rh6BG336500 Rh6CG342800 Rh6DG329800
rosa_wichuraiana Rw6G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 644
AciI CCGC 2 cut(s) 124, 700
AcsI RAATTY 1 cut(s) 999
AcyI GRCGYC 2 cut(s) 424, 645
AfaI GTAC 3 cut(s) 313, 599, 900
AfeI AGCGCT 1 cut(s) 35
AfiI CCNNNNNNNGG 6 cut(s) 59, 637, 641, 655, 705, 709
AgsI TTSAA 6 cut(s) 22, 40, 513, 583, 733, 788
AjnI CCWGG 1 cut(s) 172
AloI GAACNNNNNNTCC 2 cut(s) 901, 933
AluBI AGCT 3 cut(s) 258, 336, 412
AluI AGCT 3 cut(s) 258, 336, 412
Alw26I GTCTC 2 cut(s) 474, 965
Aor51HI AGCGCT 1 cut(s) 35
AoxI GGCC 2 cut(s) 326, 628
ApeKI GCWGC 1 cut(s) 777
ApoI RAATTY 1 cut(s) 999
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 2 cut(s) 36, 647
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 4 cut(s) 452, 535, 600, 670
AsuII TTCGAA 2 cut(s) 415, 907
AxyI CCTNAGG 1 cut(s) 651
BaeGI GKGCMC 1 cut(s) 744
BanI GGYRCC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 767
BbvI GCAGC 1 cut(s) 764
BccI CCATC 3 cut(s) 227, 290, 639
BciT130I CCWGG 1 cut(s) 174
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 474, 965
BfaI CTAG 2 cut(s) 47, 617
BfmI CTRYAG 1 cut(s) 601
BfoI RGCGCY 2 cut(s) 37, 648
BisI GCNGC 1 cut(s) 778
BlsI GCNGC 1 cut(s) 779
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 458, 646
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 379, 703, 1003
BpiI GAAGAC 1 cut(s) 767
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BpmI CTGGAG 1 cut(s) 727
Bpu14I TTCGAA 2 cut(s) 415, 907
BsaHI GRCGYC 2 cut(s) 424, 645
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 647, 677, 901, 931
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 637, 641, 655, 705, 709
Bse1I ACTGG 4 cut(s) 460, 695, 710, 749
Bse21I CCTNAGG 1 cut(s) 651
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 4 cut(s) 256, 402, 631, 718
BseLI CCNNNNNNNGG 6 cut(s) 59, 637, 641, 655, 705, 709
BseMII CTCAG 3 cut(s) 306, 564, 642
BseNI ACTGG 4 cut(s) 460, 695, 710, 749
BseRI GAGGAG 1 cut(s) 668
BseSI GKGCMC 1 cut(s) 744
BseXI GCAGC 1 cut(s) 764
BseYI CCCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 571
BshFI GGCC 2 cut(s) 328, 630
BshNI GGYRCC 1 cut(s) 644
BsiSI CCGG 1 cut(s) 638
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 6 cut(s) 59, 637, 641, 655, 705, 709
BsmAI GTCTC 2 cut(s) 474, 965
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 2 cut(s) 63, 739
BsnI GGCC 2 cut(s) 328, 630
Bsp119I TTCGAA 2 cut(s) 415, 907
Bsp1286I GDGCHC 1 cut(s) 744
Bsp143I GATC 2 cut(s) 202, 839
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 2 cut(s) 124, 700
BspANI GGCC 2 cut(s) 328, 630
BspCNI CTCAG 3 cut(s) 307, 563, 643
BspLI GGNNCC 2 cut(s) 458, 646
BspT104I TTCGAA 2 cut(s) 415, 907
BspT107I GGYRCC 1 cut(s) 644
BsrI ACTGG 4 cut(s) 460, 695, 710, 749
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 202, 839
BssNI GRCGYC 2 cut(s) 424, 645
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 5 cut(s) 88, 130, 189, 592, 820
Bst6I CTCTTC 2 cut(s) 477, 493
BstACI GRCGYC 2 cut(s) 424, 645
BstBI TTCGAA 2 cut(s) 415, 907
BstC8I GCNNGC 2 cut(s) 482, 643
BstDEI CTNAG 4 cut(s) 315, 550, 651, 956
BstDSI CCRYGG 1 cut(s) 136
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 4 cut(s) 256, 402, 631, 718
BstH2I RGCGCY 2 cut(s) 37, 648
BstHHI GCGC 2 cut(s) 36, 647
BstKTI GATC 2 cut(s) 205, 842
BstMAI GTCTC 2 cut(s) 474, 965
BstMBI GATC 2 cut(s) 202, 839
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 484
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 1 cut(s) 744
BstV1I GCAGC 1 cut(s) 764
BstV2I GAAGAC 1 cut(s) 767
Bsu36I CCTNAGG 1 cut(s) 651
BsuRI GGCC 2 cut(s) 328, 630
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 4 cut(s) 256, 402, 631, 718
BtsIMutI CAGTG 5 cut(s) 84, 467, 597, 703, 742
Cac8I GCNNGC 2 cut(s) 482, 643
CfoI GCGC 2 cut(s) 36, 647
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 3 cut(s) 312, 598, 899
CviAII CATG 3 cut(s) 137, 161, 481
CviQI GTAC 3 cut(s) 312, 598, 899
DdeI CTNAG 4 cut(s) 315, 550, 651, 956
DinI GGCGCC 1 cut(s) 646
DpnI GATC 2 cut(s) 204, 841
DpnII GATC 2 cut(s) 202, 839
DraI TTTAAA 1 cut(s) 672
Eam1104I CTCTTC 2 cut(s) 477, 493
EarI CTCTTC 2 cut(s) 477, 493
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 35
Eco81I CCTNAGG 1 cut(s) 651
Eco91I GGTNACC 1 cut(s) 606
EcoO65I GGTNACC 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 646
EheI GGCGCC 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 3 cut(s) 140, 164, 484
FalI AAGNNNNNCTT 2 cut(s) 877, 909
FaqI GGGAC 1 cut(s) 259
FatI CATG 3 cut(s) 136, 160, 480
FauI CCCGC 1 cut(s) 707
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 778
FokI GGATG 4 cut(s) 263, 409, 618, 725
Fsp4HI GCNGC 1 cut(s) 778
FspBI CTAG 2 cut(s) 47, 617
GlaI GCGC 2 cut(s) 35, 646
GluI GCNGC 1 cut(s) 778
GsaI CCCAGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 727
HaeII RGCGCY 2 cut(s) 37, 648
HaeIII GGCC 2 cut(s) 328, 630
HapII CCGG 1 cut(s) 638
HhaI GCGC 2 cut(s) 36, 647
Hin1I GRCGYC 2 cut(s) 424, 645
Hin1II CATG 3 cut(s) 140, 164, 484
Hin6I GCGC 2 cut(s) 34, 645
HinP1I GCGC 2 cut(s) 34, 645
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 3 cut(s) 142, 443, 467
HpaII CCGG 1 cut(s) 638
HphI GGTGA 4 cut(s) 452, 535, 600, 670
Hpy166II GTNNAC 2 cut(s) 312, 880
Hpy188III TCNNGA 6 cut(s) 22, 47, 192, 200, 541, 788
Hpy8I GTNNAC 2 cut(s) 312, 880
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 4 cut(s) 63, 209, 447, 785
HpyCH4III ACNGT 5 cut(s) 88, 130, 189, 592, 820
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 8 cut(s) 160, 372, 392, 480, 588, 716, 830, 925
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 4 cut(s) 315, 550, 651, 956
HpySE526I ACGT 1 cut(s) 424
Hsp92I GRCGYC 2 cut(s) 424, 645
Hsp92II CATG 3 cut(s) 140, 164, 484
HspAI GCGC 2 cut(s) 34, 645
KasI GGCGCC 1 cut(s) 644
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 202, 839
LmnI GCTCC 2 cut(s) 796, 922
Lsp1109I GCAGC 1 cut(s) 764
LweI GCATC 3 cut(s) 379, 703, 1003
MaeI CTAG 2 cut(s) 47, 617
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 82, 440, 606
MalI GATC 2 cut(s) 204, 841
MboI GATC 2 cut(s) 202, 839
MboII GAAGA 5 cut(s) 10, 67, 464, 480, 772
MhlI GDGCHC 1 cut(s) 744
MluCI AATT 5 cut(s) 238, 280, 495, 751, 999
Mly113I GGCGCC 1 cut(s) 645
MlyI GAGTC 2 cut(s) 437, 476
MmeI TCCRAC 1 cut(s) 384
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 4 cut(s) 567, 671, 822, 948
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 2 cut(s) 63, 739
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 69
NarI GGCGCC 1 cut(s) 645
NcoI CCATGG 1 cut(s) 136
NdeII GATC 2 cut(s) 202, 839
NlaIII CATG 3 cut(s) 140, 164, 484
NlaIV GGNNCC 2 cut(s) 458, 646
NmuCI GTSAC 3 cut(s) 82, 440, 606
NspI RCATGY 1 cut(s) 484
NspV TTCGAA 2 cut(s) 415, 907
PaeI GCATGC 1 cut(s) 484
PceI AGGCCT 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PctI GAATGC 2 cut(s) 63, 739
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 779
PleI GAGTC 2 cut(s) 437, 475
PluTI GGCGCC 1 cut(s) 648
PpsI GAGTC 2 cut(s) 437, 475
Psp6I CCWGG 1 cut(s) 172
PspEI GGTNACC 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 737
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 458, 646
PspPI GGNCC 1 cut(s) 628
RsaI GTAC 3 cut(s) 313, 599, 900
RsaNI GTAC 3 cut(s) 312, 598, 899
SaqAI TTAA 4 cut(s) 567, 671, 822, 948
SatI GCNGC 1 cut(s) 778
Sau3AI GATC 2 cut(s) 202, 839
Sau96I GGNCC 1 cut(s) 628
ScaI AGTACT 1 cut(s) 599
SchI GAGTC 2 cut(s) 437, 476
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 3 cut(s) 379, 703, 1003
SfcI CTRYAG 1 cut(s) 601
SfoI GGCGCC 1 cut(s) 646
SfuI TTCGAA 2 cut(s) 415, 907
SphI GCATGC 1 cut(s) 484
Sse9I AATT 5 cut(s) 238, 280, 495, 751, 999
SseBI AGGCCT 1 cut(s) 328
SsiI CCGC 2 cut(s) 124, 700
SspDI GGCGCC 1 cut(s) 644
SspMI CTAG 2 cut(s) 47, 617
StuI AGGCCT 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 5 cut(s) 88, 130, 189, 592, 820
TaiI ACGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 415, 446, 907
TasI AATT 5 cut(s) 238, 280, 495, 751, 999
TatI WGTACW 3 cut(s) 311, 597, 898
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 4 cut(s) 567, 671, 822, 948
Tru9I TTAA 4 cut(s) 567, 671, 822, 948
TscAI CASTG 5 cut(s) 91, 467, 597, 710, 749
TseFI GTSAC 3 cut(s) 82, 440, 606
TseI GCWGC 1 cut(s) 777
Tsp45I GTSAC 3 cut(s) 82, 440, 606
TspDTI ATGAA 3 cut(s) 156, 228, 824
TspRI CASTG 5 cut(s) 91, 467, 597, 710, 749
XapI RAATTY 1 cut(s) 999
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 47, 617
ZraI GACGTC 1 cut(s) 425
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.