Prupe.8G242600_v2.0.a1

protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
21199953 .. 21203790
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G242600.1

Sequence Viewer

Length: 1365 bp
ATGGCTAACAGTAAGAGCACACCTCCACAGGACACAGAAGACACGAAGACCCAGTTTGAGTTCTTGAAGAAATTCAAGCGCTTCAACCCTCTTGAGCCTTCTTTAGCCATTCTTGGCTTCTTCTTGGTCTCTCTTCTTTTCATTAGCTGCTTCTCTTATTTGGACTACCATATGGTTATTAGCGGGATTCGTTCTCGTGGGTTTGCCTTGCTGGGATTGCATGGCTCATCATCTTTACCGTCATCAACTGGGAATGTACGGCCGGGATTTCTTGATGAAGGCTGTGTTGCGTGTGATGTGTTTGATGGGAATTGGGTTTGGGATGAGAGCTATCCGTTGTATGAGTCACAAAATTGCTCTTTCATGGATGGCGGCTTTAGATGTTCTGAGAATGGCAGGCCTGATTCTATCTTTACCAAGTGGCGTTGGCAACCCAAAGATTGCAGCTTGCCCAGATTTGATGCAGGGAAGATGTTGGAAAAGCTTCGGAACAGGCGTCTTGTATTTGTTGGTGATTCAATTGGAAGGAACCAGTGGGAGTCTCTTCTCTGTATGCTTTCCTCTGCAATTCCTAACAAGACTTCAATCTATGAGGTGAATGGGAATCCAATCACAAAGCACTCGGGGTTCTTGGTGTTCAAGTTTGAGGACTTCAACTGCACAGTGGAATATTACAGAGCACCATTTCTAGTCTTTCAGGGCCGTCCTCCAGCTGGCGCTCCAGCAAAAGTGAAGTACGCTTTAAAAGTGGATCAGCTGGAAGGGACTTACACCAAGTGGAGAGATGCAGATGTGTTGATTTTCAATGCTGGGCACTGGTGGAGTTATGCGAAGACCTTAAGAGAGGGTTGCTACTTCCAAGAAGGGGAGGAGGTGAAGATGAATATGACTGTTGAAACTGCATACCGCAGATCGATTGAAACTGTGATTGATTGGATTGGTAGTGAAGTGAACATGAGCAAGACTTATGTCCTCTTTCGAACTTATGCTCCCGTGCATTTCAGTGGCGGTGATTGGAATACTGGTGGTGGTTGTCACTTGGAAACTCTACCTGGATTAACTTCATTGCCAGATTCATGCACAAGTGTTTGTAAGACTATCTTTGATATAGTATCGGAGCGATCAAATGAGTCACATGTTAGGAAATTGGATTTGCTGAATGTGACAAACATGTCTCGATGGAGAAAAGATGGCCATGCGTCTATATACTATCTAGGGCCTGAGACTGGACCAGCCTCCATCAAGCATCAAGACTGCAGCCACTGGTGCCTACCGGGCGTCCCTGATGCATGGAATGAGCTTCTTTATGCACTCTTCCTTAAACGGGAATCCATTCTCACAGGAAATTCAACCAAATCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

51.43

Weight (kDa)

6.79

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015547)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1171
AccB1I GGYRCC 1 cut(s) 1266
AciI CCGC 4 cut(s) 183, 372, 907, 1008
AclWI GGATC 1 cut(s) 759
AcoI YGGCCR 2 cut(s) 260, 1192
AcsI RAATTY 2 cut(s) 71, 1345
AcyI GRCGYC 2 cut(s) 496, 1278
AdeI CACNNNGTG 1 cut(s) 777
AfaI GTAC 2 cut(s) 258, 737
AfeI AGCGCT 1 cut(s) 80
AfiI CCNNNNNNNGG 4 cut(s) 713, 865, 1226, 1324
AflII CTTAAG 1 cut(s) 838
AflIII ACRYGT 2 cut(s) 1135, 1170
AjnI CCWGG 1 cut(s) 1051
AloI GAACNNNNNNTCC 2 cut(s) 973, 1005
AluBI AGCT 7 cut(s) 147, 330, 447, 484, 713, 757, 1300
AluI AGCT 7 cut(s) 147, 330, 447, 484, 713, 757, 1300
Alw21I GWGCWC 2 cut(s) 20, 682
Alw26I GTCTC 4 cut(s) 133, 546, 1179, 1217
AlwI GGATC 1 cut(s) 759
AlwNI CAGNNNCTG 1 cut(s) 1263
Ama87I CYCGRG 1 cut(s) 622
Aor51HI AGCGCT 1 cut(s) 80
AoxI GGCC 5 cut(s) 260, 398, 700, 1192, 1217
ApeKI GCWGC 3 cut(s) 147, 444, 1257
ApoI RAATTY 2 cut(s) 71, 1345
Asp700I GAANNNNTTC 3 cut(s) 71, 483, 1332
AspLEI GCGC 2 cut(s) 81, 719
AspS9I GGNCC 3 cut(s) 700, 1217, 1229
AsuC2I CCSGG 2 cut(s) 264, 1275
AsuHPI GGTGA 4 cut(s) 524, 607, 886, 1022
AsuII TTCGAA 1 cut(s) 979
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 1 cut(s) 1229
BaeGI GKGCMC 1 cut(s) 816
BalI TGGCCA 1 cut(s) 1194
BanI GGYRCC 1 cut(s) 1266
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 3 cut(s) 45, 53, 839
Bbv12I GWGCWC 2 cut(s) 20, 682
BbvI GCAGC 3 cut(s) 134, 456, 1269
BccI CCATC 5 cut(s) 299, 362, 1173, 1184, 1247
BceAI ACGGC 2 cut(s) 275, 687
BciT130I CCWGG 1 cut(s) 1053
BcnI CCSGG 2 cut(s) 264, 1275
BcoDI GTCTC 4 cut(s) 133, 546, 1179, 1217
BfaI CTAG 2 cut(s) 689, 1214
BfmI CTRYAG 1 cut(s) 1255
BfoI RGCGCY 2 cut(s) 82, 720
BfrI CTTAAG 1 cut(s) 838
BglI GCCNNNNNGGC 1 cut(s) 1275
BisI GCNGC 4 cut(s) 148, 373, 445, 1258
BlsI GCNGC 4 cut(s) 149, 374, 446, 1259
Bme1390I CCNGG 3 cut(s) 264, 1053, 1275
Bme18I GGWCC 1 cut(s) 1229
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 3 cut(s) 700, 1217, 1229
BmiI GGNNCC 2 cut(s) 530, 1268
BmrFI CCNGG 3 cut(s) 264, 1053, 1275
BmrI ACTGGG 2 cut(s) 46, 258
BmsI GCATC 4 cut(s) 451, 775, 1255, 1276
BmuI ACTGGG 2 cut(s) 46, 258
BoxI GACNNNNGTC 1 cut(s) 968
BpiI GAAGAC 3 cut(s) 45, 53, 839
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 2 cut(s) 693, 705
Bpu14I TTCGAA 1 cut(s) 979
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 2 cut(s) 264, 1275
Bsa29I ATCGAT 1 cut(s) 914
BsaHI GRCGYC 2 cut(s) 496, 1278
BsaI GGTCTC 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 973, 1003
Bsc4I CCNNNNNNNGG 4 cut(s) 713, 865, 1226, 1324
Bse1I ACTGG 7 cut(s) 52, 253, 532, 821, 1027, 1231, 1268
Bse3DI GCAATG 1 cut(s) 1064
BseBI CCWGG 1 cut(s) 1053
BseCI ATCGAT 1 cut(s) 914
BseGI GGATG 2 cut(s) 328, 373
BseLI CCNNNNNNNGG 4 cut(s) 713, 865, 1226, 1324
BseMI GCAATG 1 cut(s) 1064
BseMII CTCAG 2 cut(s) 378, 1212
BseNI ACTGG 7 cut(s) 52, 253, 532, 821, 1027, 1231, 1268
BseRI GAGGAG 1 cut(s) 884
BseSI GKGCMC 1 cut(s) 816
BseX3I CGGCCG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 134, 456, 1269
BseYI CCCAGC 2 cut(s) 211, 809
BsgI GTGCAG 1 cut(s) 643
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 5 cut(s) 262, 400, 702, 1194, 1219
BshNI GGYRCC 1 cut(s) 1266
BshVI ATCGAT 1 cut(s) 914
BsiEI CGRYCG 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 20, 682
BsiHKCI CYCGRG 1 cut(s) 622
BsiSI CCGG 2 cut(s) 263, 1274
BslFI GGGAC 2 cut(s) 778, 1265
BslI CCNNNNNNNGG 4 cut(s) 713, 865, 1226, 1324
BsmAI GTCTC 4 cut(s) 133, 546, 1179, 1217
BsmFI GGGAC 2 cut(s) 778, 1265
BsnI GGCC 5 cut(s) 262, 400, 702, 1194, 1219
Bso31I GGTCTC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 979
Bsp1286I GDGCHC 3 cut(s) 20, 682, 816
Bsp143I GATC 3 cut(s) 751, 911, 1121
BspACI CCGC 4 cut(s) 183, 372, 907, 1008
BspANI GGCC 5 cut(s) 262, 400, 702, 1194, 1219
BspCNI CTCAG 2 cut(s) 379, 1213
BspDI ATCGAT 1 cut(s) 914
BspLI GGNNCC 2 cut(s) 530, 1268
BspMAI CTGCAG 1 cut(s) 1259
BspPI GGATC 1 cut(s) 759
BspT104I TTCGAA 1 cut(s) 979
BspT107I GGYRCC 1 cut(s) 1266
BspTI CTTAAG 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 1064
BsrI ACTGG 7 cut(s) 52, 253, 532, 821, 1027, 1231, 1268
BssMI GATC 3 cut(s) 751, 911, 1121
BssNI GRCGYC 2 cut(s) 496, 1278
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 1053
Bst4CI ACNGT 5 cut(s) 11, 240, 664, 892, 925
Bst6I CTCTTC 3 cut(s) 138, 549, 1319
BstACI GRCGYC 2 cut(s) 496, 1278
BstAFI CTTAAG 1 cut(s) 838
BstBI TTCGAA 1 cut(s) 979
BstC8I GCNNGC 3 cut(s) 398, 449, 715
BstDEI CTNAG 2 cut(s) 387, 1221
BstF5I GGATG 2 cut(s) 328, 373
BstH2I RGCGCY 2 cut(s) 82, 720
BstHHI GCGC 2 cut(s) 81, 719
BstKTI GATC 3 cut(s) 754, 914, 1124
BstMAI GTCTC 4 cut(s) 133, 546, 1179, 1217
BstMBI GATC 3 cut(s) 751, 911, 1121
BstMCI CGRYCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 3 cut(s) 217, 1266, 1275
BstNI CCWGG 1 cut(s) 1053
BstNSI RCATGY 2 cut(s) 1139, 1174
BstPAI GACNNNNGTC 1 cut(s) 968
BstSCI CCNGG 3 cut(s) 262, 1051, 1273
BstSFI CTRYAG 1 cut(s) 1255
BstSLI GKGCMC 1 cut(s) 816
BstV1I GCAGC 3 cut(s) 134, 456, 1269
BstV2I GAAGAC 3 cut(s) 45, 53, 839
BstZI CGGCCG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 914
BsuRI GGCC 5 cut(s) 262, 400, 702, 1194, 1219
BsuTUI ATCGAT 1 cut(s) 914
BtsCI GGATG 2 cut(s) 328, 373
BtsIMutI CAGTG 5 cut(s) 539, 669, 814, 1009, 1261
Cac8I GCNNGC 3 cut(s) 398, 449, 715
CaiI CAGNNNCTG 1 cut(s) 1263
CfoI GCGC 2 cut(s) 81, 719
Cfr13I GGNCC 3 cut(s) 700, 1217, 1229
ClaI ATCGAT 1 cut(s) 914
CseI GACGC 3 cut(s) 485, 1188, 1267
Csp6I GTAC 2 cut(s) 257, 736
CviAII CATG 8 cut(s) 221, 364, 955, 1077, 1136, 1171, 1196, 1290
CviQI GTAC 2 cut(s) 257, 736
DdeI CTNAG 2 cut(s) 387, 1221
DpnI GATC 3 cut(s) 753, 913, 1123
DpnII GATC 3 cut(s) 751, 911, 1121
DraI TTTAAA 1 cut(s) 744
DraIII CACNNNGTG 1 cut(s) 777
DrdI GACNNNNNNGTC 1 cut(s) 1171
DseDI GACNNNNNNGTC 1 cut(s) 1171
EaeI YGGCCR 2 cut(s) 260, 1192
EagI CGGCCG 1 cut(s) 260
Eam1104I CTCTTC 3 cut(s) 138, 549, 1319
EarI CTCTTC 3 cut(s) 138, 549, 1319
EclXI CGGCCG 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 400
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 1229
Eco47III AGCGCT 1 cut(s) 80
Eco52I CGGCCG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 1217
EcoRII CCWGG 1 cut(s) 1051
EcoT22I ATGCAT 1 cut(s) 1291
FaeI CATG 8 cut(s) 224, 367, 958, 1080, 1139, 1174, 1199, 1293
FalI AAGNNNNNCTT 2 cut(s) 1085, 1117
FaqI GGGAC 2 cut(s) 778, 1265
FatI CATG 8 cut(s) 220, 363, 954, 1076, 1135, 1170, 1195, 1289
FauI CCCGC 1 cut(s) 176
FauNDI CATATG 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 148, 373, 445, 1258
FokI GGATG 2 cut(s) 335, 380
Fsp4HI GCNGC 4 cut(s) 148, 373, 445, 1258
FspBI CTAG 2 cut(s) 689, 1214
GlaI GCGC 2 cut(s) 80, 718
GluI GCNGC 4 cut(s) 148, 373, 445, 1258
GsaI CCCAGC 2 cut(s) 215, 813
GsuI CTGGAG 2 cut(s) 693, 705
HaeII RGCGCY 2 cut(s) 82, 720
HaeIII GGCC 5 cut(s) 262, 400, 702, 1194, 1219
HapII CCGG 2 cut(s) 263, 1274
HgaI GACGC 3 cut(s) 485, 1188, 1267
HhaI GCGC 2 cut(s) 81, 719
Hin1I GRCGYC 2 cut(s) 496, 1278
Hin1II CATG 8 cut(s) 224, 367, 958, 1080, 1139, 1174, 1199, 1293
Hin6I GCGC 2 cut(s) 79, 717
HinP1I GCGC 2 cut(s) 79, 717
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 9 cut(s) 187, 344, 404, 515, 539, 604, 1073, 1130, 1328
HpaII CCGG 2 cut(s) 263, 1274
HphI GGTGA 4 cut(s) 524, 607, 886, 1022
Hpy166II GTNNAC 1 cut(s) 952
Hpy188I TCNGA 3 cut(s) 388, 489, 1117
Hpy188III TCNNGA 5 cut(s) 64, 92, 272, 1176, 1250
Hpy8I GTNNAC 1 cut(s) 952
HpyAV CCTTC 5 cut(s) 108, 272, 519, 755, 857
HpyCH4III ACNGT 5 cut(s) 11, 240, 664, 892, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 1266, 1275
HpyF3I CTNAG 2 cut(s) 387, 1221
Hsp92I GRCGYC 2 cut(s) 496, 1278
Hsp92II CATG 8 cut(s) 224, 367, 958, 1080, 1139, 1174, 1199, 1293
HspAI GCGC 2 cut(s) 79, 717
Kzo9I GATC 3 cut(s) 751, 911, 1121
LmnI GCTCC 3 cut(s) 724, 994, 1117
Lsp1109I GCAGC 3 cut(s) 134, 456, 1269
LweI GCATC 4 cut(s) 451, 775, 1255, 1276
MaeI CTAG 2 cut(s) 689, 1214
MaeIII GTNAC 4 cut(s) 345, 1034, 1131, 1162
MalI GATC 3 cut(s) 753, 913, 1123
MboI GATC 3 cut(s) 751, 911, 1121
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 3 cut(s) 20, 682, 816
MlsI TGGCCA 1 cut(s) 1194
MluCI AATT 7 cut(s) 71, 310, 352, 519, 567, 1145, 1345
MluNI TGGCCA 1 cut(s) 1194
MlyI GAGTC 3 cut(s) 353, 548, 1139
MmeI TCCRAC 1 cut(s) 456
Mox20I TGGCCA 1 cut(s) 1194
Mph1103I ATGCAT 1 cut(s) 1291
MroXI GAANNNNTTC 3 cut(s) 71, 483, 1332
MscI TGGCCA 1 cut(s) 1194
MseI TTAA 4 cut(s) 743, 839, 1058, 1320
MslI CAYNNNNRTG 1 cut(s) 1002
Msp20I TGGCCA 1 cut(s) 1194
MspA1I CMGCKG 2 cut(s) 713, 757
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 2 cut(s) 263, 1274
MspR9I CCNGG 3 cut(s) 264, 1053, 1275
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 1053
MwoI GCNNNNNNNGC 3 cut(s) 217, 1266, 1275
NciI CCSGG 2 cut(s) 264, 1275
NdeI CATATG 1 cut(s) 171
NdeII GATC 3 cut(s) 751, 911, 1121
NlaIII CATG 8 cut(s) 224, 367, 958, 1080, 1139, 1174, 1199, 1293
NlaIV GGNNCC 2 cut(s) 530, 1268
NmuCI GTSAC 4 cut(s) 345, 1034, 1131, 1162
NsiI ATGCAT 1 cut(s) 1291
NspI RCATGY 2 cut(s) 1139, 1174
NspV TTCGAA 1 cut(s) 979
PceI AGGCCT 1 cut(s) 400
PciI ACATGT 2 cut(s) 1135, 1170
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PdmI GAANNNNTTC 3 cut(s) 71, 483, 1332
PfeI GAWTC 6 cut(s) 187, 404, 515, 604, 1073, 1328
PkrI GCNGC 4 cut(s) 149, 374, 446, 1259
PleI GAGTC 3 cut(s) 352, 547, 1138
PpsI GAGTC 3 cut(s) 352, 547, 1138
PscI ACATGT 2 cut(s) 1135, 1170
PshAI GACNNNNGTC 1 cut(s) 968
Psp6I CCWGG 1 cut(s) 1051
PspFI CCCAGC 2 cut(s) 211, 809
PspGI CCWGG 1 cut(s) 1051
PspN4I GGNNCC 2 cut(s) 530, 1268
PspPI GGNCC 3 cut(s) 700, 1217, 1229
PstI CTGCAG 1 cut(s) 1259
PstNI CAGNNNCTG 1 cut(s) 1263
PvuII CAGCTG 2 cut(s) 713, 757
RsaI GTAC 2 cut(s) 258, 737
RsaNI GTAC 2 cut(s) 257, 736
RseI CAYNNNNRTG 1 cut(s) 1002
SaqAI TTAA 4 cut(s) 743, 839, 1058, 1320
SatI GCNGC 4 cut(s) 148, 373, 445, 1258
Sau3AI GATC 3 cut(s) 751, 911, 1121
Sau96I GGNCC 3 cut(s) 700, 1217, 1229
SchI GAGTC 3 cut(s) 353, 548, 1139
ScrFI CCNGG 3 cut(s) 264, 1053, 1275
SduI GDGCHC 3 cut(s) 20, 682, 816
SfaNI GCATC 4 cut(s) 451, 775, 1255, 1276
SfcI CTRYAG 1 cut(s) 1255
SfuI TTCGAA 1 cut(s) 979
SinI GGWCC 1 cut(s) 1229
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 2 cut(s) 92, 838
SmoI CTYRAG 2 cut(s) 92, 838
Sse9I AATT 7 cut(s) 71, 310, 352, 519, 567, 1145, 1345
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 4 cut(s) 183, 372, 907, 1008
SspI AATATT 1 cut(s) 671
SspMI CTAG 2 cut(s) 689, 1214
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 3 cut(s) 262, 1051, 1273
TaaI ACNGT 5 cut(s) 11, 240, 664, 892, 925
TaqI TCGA 3 cut(s) 914, 979, 1177
TasI AATT 7 cut(s) 71, 310, 352, 519, 567, 1145, 1345
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 6 cut(s) 187, 404, 515, 604, 1073, 1328
Tru1I TTAA 4 cut(s) 743, 839, 1058, 1320
Tru9I TTAA 4 cut(s) 743, 839, 1058, 1320
TscAI CASTG 5 cut(s) 539, 669, 821, 1009, 1268
TseFI GTSAC 4 cut(s) 345, 1034, 1131, 1162
TseI GCWGC 3 cut(s) 147, 444, 1257
Tsp45I GTSAC 4 cut(s) 345, 1034, 1131, 1162
TspDTI ATGAA 6 cut(s) 130, 291, 352, 896, 1053, 1065
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 5 cut(s) 539, 669, 821, 1009, 1268
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 1 cut(s) 1229
XapI RAATTY 2 cut(s) 71, 1345
XceI RCATGY 2 cut(s) 1139, 1174
XmnI GAANNNNTTC 3 cut(s) 71, 483, 1332
XspI CTAG 2 cut(s) 689, 1214
Zsp2I ATGCAT 1 cut(s) 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.