pycom03g21320

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015547
Physical Location & Seq
Reverse (-)
21623928 .. 21626600
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21320.4

Sequence Viewer

Length: 1227 bp
ATGCTTACTTTCTCTCTCAGACCCCACCCCTTTGTTTTTGGACCATTTCTCCAACCCCCACAACTCCCACGAACTCTCAATGCTTCATTCTTCAAACAAATGCCGAATAACAATCCCGCGTCTCCACACCAAACAGAGGAAAGCACAATGACCCACTTGGAGTTCTTCAAGAAACTCAAACGCTCCAACCCTCTTGAGCCCTCTCTGGGGATTCTTGGGTTCTTCTTGGTCGCTTTTCTCTTCGTTAGCTGCTTCTCCTACTTGGATCACCGTACAGTTTACAGTTGGATTCTGGGGTTGCCGTCAAGGGGGAATGGACTGCTGGAATTTCTTGAGGAAGGCGGTAACGGCTGTGACGTGTTTGATGGGAATTGGGTTTGGGATGAGAGCTATCCGTTGTACGAGTCTCAGAATTGTAGCCTTTTAGATGGAGGGTTTAGATGTTCTGAGAATGGCCGGCCTGATAATTTCTACACCAAGTGGCGTTGGCAGCCCAAAGGTTGCACCTTGCCCAGATTCGATGCAGGGAAGATGTTGGAGAAGCTTCGGAACCGGCGTGTTGTATTTGTTGGTGATTCAATTGGAAGGAACCAATGGGAGTCTCTTCTCTGTATGCTCTCCTCTGCGGTTCCTAACAAGACTTCAATCTATGAGGTGAATGGGAATCCAATCACAAAGCATTCAGGGTTCTTGATATTCAAGTTTGAGGACTTCAACTGCACTGTGGAATACTACAGAGCACCATTTCTAGTCTTTCAGGGCCACCCTCCTGCTGGCGCTCCAGAAAACGTGAAGATAACCTTAAGGATCGATCAACTGGAAAGGACTTCCAGGCAGTGGAGAGATGCAGATGTGCTGATTCTCAATGCGGGGCATTGGTGGAGTTATGAGAAGACCATACGAGATGGTTGCTACTTCCAAGAAGGAGAGGAGGTGAAGATGAATATGACTGTCGAAACAGCATTTCGTAGGTCGTTAGATACTGTGATCGATTGGATTGGCAATGAAGTGAACATGAGCAAGTCTTATGTTCTCTTTCGAACTTATGCTCCCGTGCATTTCAGTGGCGGTGATTGGAATACGGGTGGTGGTTGTCAGTTGGAGAACCTACCTGGATCAAGTTTGTTGTCCAATTCATCCGAAAGTGTTTACAAGACTATCTTTGATCTTGCATATCAGAGCGTTCAAATGAGTCACATGTTAGGAAACTGGATTTGCTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

409

Amino Acids

46.75

Weight (kDa)

6.17

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015547)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23720
malus_domestica MD03G1266900.v1.1 MD11G1287300.v1.1
prunus_persica Prupe.8G242600_v2.0.a1
pyrus_communis pycom03g21320 pycom11g25470
rosa_chinensis RchiOBHm_Chr6g0291221
rosa_laevigata RLG00000012132
rosa_multiflora Rmu_sc0013203.1_g000020
rosa_roxburghii Rroxscaffold_7G00176240
rosa_rugosa Rorug06G0218500
rosa_samantha Rh6AG329300 Rh6BG336500 Rh6CG342800 Rh6DG329800
rosa_wichuraiana Rw6G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 837
AccII CGCG 1 cut(s) 119
AciI CCGC 5 cut(s) 117, 342, 626, 869, 1068
AclWI GGATC 3 cut(s) 273, 815, 1123
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 2 cut(s) 274, 401
AfiI CCNNNNNNNGG 6 cut(s) 136, 206, 207, 308, 773, 837
AflII CTTAAG 1 cut(s) 802
AflIII ACRYGT 2 cut(s) 357, 1197
AgsI TTSAA 7 cut(s) 94, 169, 579, 645, 700, 715, 1187
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 2 cut(s) 830, 1111
AloI GAACNNNNNNTCC 2 cut(s) 1033, 1065
AluBI AGCT 3 cut(s) 249, 390, 544
AluI AGCT 3 cut(s) 249, 390, 544
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 3 cut(s) 126, 411, 606
AlwI GGATC 3 cut(s) 273, 815, 1123
AoxI GGCC 3 cut(s) 454, 458, 760
ApeKI GCWGC 2 cut(s) 249, 490
ApoI RAATTY 1 cut(s) 326
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 2 cut(s) 41, 760
AsuHPI GGTGA 5 cut(s) 260, 584, 667, 946, 1082
AsuII TTCGAA 1 cut(s) 1039
AvaII GGWCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 2 cut(s) 236, 502
BccI CCATC 3 cut(s) 359, 422, 899
BceAI ACGGC 2 cut(s) 286, 364
BcgI CGANNNNNNTGC 2 cut(s) 891, 925
BciT130I CCWGG 2 cut(s) 832, 1113
BcoDI GTCTC 3 cut(s) 126, 411, 606
BfaI CTAG 1 cut(s) 749
BfmI CTRYAG 1 cut(s) 733
BfoI RGCGCY 1 cut(s) 780
BfrI CTTAAG 1 cut(s) 802
BisI GCNGC 2 cut(s) 250, 491
BlsI GCNGC 2 cut(s) 251, 492
Bme1390I CCNGG 2 cut(s) 832, 1113
Bme18I GGWCC 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 41, 760
BmiI GGNNCC 3 cut(s) 551, 590, 630
BmrFI CCNGG 2 cut(s) 832, 1113
BmsI GCATC 2 cut(s) 511, 835
BpiI GAAGAC 1 cut(s) 899
BpmI CTGGAG 1 cut(s) 765
Bpu14I TTCGAA 1 cut(s) 1039
BpuEI CTTGAG 2 cut(s) 215, 353
Bsa29I ATCGAT 2 cut(s) 810, 990
BsaXI ACNNNNNCTCC 6 cut(s) 33, 63, 918, 948, 1033, 1063
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 206, 207, 308, 773, 837
Bse118I RCCGGY 2 cut(s) 456, 552
Bse1I ACTGG 2 cut(s) 822, 1214
Bse3DI GCAATG 1 cut(s) 1009
BseBI CCWGG 2 cut(s) 832, 1113
BseCI ATCGAT 2 cut(s) 810, 990
BseGI GGATG 2 cut(s) 388, 1136
BseLI CCNNNNNNNGG 6 cut(s) 136, 206, 207, 308, 773, 837
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 3 cut(s) 31, 422, 438
BseNI ACTGG 2 cut(s) 822, 1214
BseRI GAGGAG 2 cut(s) 610, 944
BseXI GCAGC 2 cut(s) 236, 502
BsgI GTGCAG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 456, 460, 762
BshVI ATCGAT 2 cut(s) 810, 990
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 2 cut(s) 457, 553
BslI CCNNNNNNNGG 6 cut(s) 136, 206, 207, 308, 773, 837
BsmAI GTCTC 3 cut(s) 126, 411, 606
BsmBI CGTCTC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 3 cut(s) 456, 460, 762
Bsp119I TTCGAA 1 cut(s) 1039
Bsp1286I GDGCHC 2 cut(s) 201, 742
Bsp143I GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
BspACI CCGC 5 cut(s) 117, 342, 626, 869, 1068
BspANI GGCC 3 cut(s) 456, 460, 762
BspCNI CTCAG 3 cut(s) 30, 421, 439
BspDI ATCGAT 2 cut(s) 810, 990
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 3 cut(s) 551, 590, 630
BspPI GGATC 3 cut(s) 273, 815, 1123
BspT104I TTCGAA 1 cut(s) 1039
BspTI CTTAAG 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 1009
BsrFI RCCGGY 2 cut(s) 456, 552
BsrI ACTGG 2 cut(s) 822, 1214
BssAI RCCGGY 2 cut(s) 456, 552
BssMI GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
Bst2UI CCWGG 2 cut(s) 832, 1113
Bst4CI ACNGT 6 cut(s) 272, 277, 284, 724, 952, 985
Bst6I CTCTTC 2 cut(s) 245, 609
BstAFI CTTAAG 1 cut(s) 802
BstBI TTCGAA 1 cut(s) 1039
BstC8I GCNNGC 2 cut(s) 458, 775
BstDEI CTNAG 3 cut(s) 17, 408, 447
BstF5I GGATG 2 cut(s) 388, 1136
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 780
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 6 cut(s) 268, 810, 814, 990, 1118, 1168
BstMAI GTCTC 3 cut(s) 126, 411, 606
BstMBI GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
BstMWI GCNNNNNNNGC 2 cut(s) 348, 490
BstNI CCWGG 2 cut(s) 832, 1113
BstNSI RCATGY 1 cut(s) 1201
BstSCI CCNGG 2 cut(s) 830, 1111
BstSFI CTRYAG 1 cut(s) 733
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 236, 502
BstV2I GAAGAC 1 cut(s) 899
Bsu15I ATCGAT 2 cut(s) 810, 990
BsuRI GGCC 3 cut(s) 456, 460, 762
BsuTUI ATCGAT 2 cut(s) 810, 990
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 2 cut(s) 388, 1136
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 3 cut(s) 720, 842, 1069
Cac8I GCNNGC 2 cut(s) 458, 775
CfoI GCGC 1 cut(s) 779
Cfr10I RCCGGY 2 cut(s) 456, 552
Cfr13I GGNCC 2 cut(s) 41, 760
ClaI ATCGAT 2 cut(s) 810, 990
CseI GACGC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 273, 400
CviAII CATG 2 cut(s) 1015, 1198
CviQI GTAC 2 cut(s) 273, 400
DdeI CTNAG 3 cut(s) 17, 408, 447
DpnI GATC 6 cut(s) 267, 809, 813, 989, 1117, 1167
DpnII GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
DraIII CACNNNGTG 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 245, 609
EarI CTCTTC 2 cut(s) 245, 609
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 830, 1111
EcoT38I GRGCYC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 2 cut(s) 1018, 1201
FalI AAGNNNNNCTT 4 cut(s) 785, 817, 1145, 1177
FatI CATG 2 cut(s) 1014, 1197
FauI CCCGC 2 cut(s) 124, 862
Fnu4HI GCNGC 2 cut(s) 250, 491
FokI GGATG 2 cut(s) 395, 1123
FriOI GRGCYC 1 cut(s) 201
FseI GGCCGGCC 1 cut(s) 460
Fsp4HI GCNGC 2 cut(s) 250, 491
FspBI CTAG 1 cut(s) 749
GlaI GCGC 1 cut(s) 778
GluI GCNGC 2 cut(s) 250, 491
GsuI CTGGAG 1 cut(s) 765
HaeII RGCGCY 1 cut(s) 780
HaeIII GGCC 3 cut(s) 456, 460, 762
HapII CCGG 2 cut(s) 457, 553
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 779
Hin1II CATG 2 cut(s) 1018, 1201
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 9 cut(s) 211, 289, 404, 516, 575, 599, 664, 859, 1192
HpaII CCGG 2 cut(s) 457, 553
HphI GGTGA 5 cut(s) 260, 584, 667, 946, 1082
Hpy166II GTNNAC 3 cut(s) 280, 1012, 1150
Hpy188I TCNGA 6 cut(s) 20, 411, 448, 549, 1141, 1179
Hpy188III TCNNGA 5 cut(s) 169, 194, 332, 691, 782
Hpy8I GTNNAC 3 cut(s) 280, 1012, 1150
HpyAV CCTTC 3 cut(s) 332, 579, 917
HpyCH4III ACNGT 6 cut(s) 272, 277, 284, 724, 952, 985
HpyCH4IV ACGT 2 cut(s) 357, 789
HpyCH4V TGCA 6 cut(s) 504, 524, 720, 848, 1057, 1172
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 490
HpyF3I CTNAG 3 cut(s) 17, 408, 447
HpySE526I ACGT 2 cut(s) 357, 789
Hsp92II CATG 2 cut(s) 1018, 1201
HspAI GCGC 1 cut(s) 777
KroI GCCGGC 1 cut(s) 456
KroNI GCCGGC 1 cut(s) 458
Kzo9I GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
LmnI GCTCC 3 cut(s) 188, 784, 1054
Lsp1109I GCAGC 2 cut(s) 236, 502
LweI GCATC 2 cut(s) 511, 835
MaeI CTAG 1 cut(s) 749
MaeII ACGT 2 cut(s) 357, 789
MaeIII GTNAC 3 cut(s) 344, 353, 1193
MalI GATC 6 cut(s) 267, 809, 813, 989, 1117, 1167
MboI GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
MboII GAAGA 9 cut(s) 82, 157, 214, 232, 541, 596, 805, 904, 949
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 201, 742
MluCI AATT 6 cut(s) 326, 370, 412, 466, 579, 1132
MlyI GAGTC 3 cut(s) 413, 608, 1201
MmeI TCCRAC 5 cut(s) 76, 210, 266, 516, 1080
MroNI GCCGGC 1 cut(s) 456
MseI TTAA 1 cut(s) 803
MslI CAYNNNNRTG 1 cut(s) 1062
MspCI CTTAAG 1 cut(s) 802
MspI CCGG 2 cut(s) 457, 553
MspR9I CCNGG 2 cut(s) 832, 1113
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 2 cut(s) 832, 1113
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 348, 490
NaeI GCCGGC 1 cut(s) 458
NdeII GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
NgoMIV GCCGGC 1 cut(s) 456
NlaIII CATG 2 cut(s) 1018, 1201
NlaIV GGNNCC 3 cut(s) 551, 590, 630
NmuCI GTSAC 2 cut(s) 353, 1193
NspI RCATGY 1 cut(s) 1201
NspV TTCGAA 1 cut(s) 1039
PciI ACATGT 1 cut(s) 1197
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 553
PctI GAATGC 1 cut(s) 679
PdiI GCCGGC 1 cut(s) 458
PfeI GAWTC 6 cut(s) 211, 289, 516, 575, 664, 859
PflMI CCANNNNNTGG 1 cut(s) 837
PkrI GCNGC 2 cut(s) 251, 492
PleI GAGTC 3 cut(s) 412, 607, 1200
PpsI GAGTC 3 cut(s) 412, 607, 1200
PscI ACATGT 1 cut(s) 1197
Psp6I CCWGG 2 cut(s) 830, 1111
PspGI CCWGG 2 cut(s) 830, 1111
PspN4I GGNNCC 3 cut(s) 551, 590, 630
PspPI GGNCC 2 cut(s) 41, 760
RigI GGCCGGCC 1 cut(s) 460
RsaI GTAC 2 cut(s) 274, 401
RsaNI GTAC 2 cut(s) 273, 400
RseI CAYNNNNRTG 1 cut(s) 1062
SaqAI TTAA 1 cut(s) 803
SatI GCNGC 2 cut(s) 250, 491
Sau3AI GATC 6 cut(s) 265, 807, 811, 987, 1115, 1165
Sau96I GGNCC 2 cut(s) 41, 760
SchI GAGTC 3 cut(s) 413, 608, 1201
ScrFI CCNGG 2 cut(s) 832, 1113
SduI GDGCHC 2 cut(s) 201, 742
SfaNI GCATC 2 cut(s) 511, 835
SfcI CTRYAG 1 cut(s) 733
SfuI TTCGAA 1 cut(s) 1039
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 1062
SmlI CTYRAG 3 cut(s) 194, 332, 802
SmoI CTYRAG 3 cut(s) 194, 332, 802
Sse9I AATT 6 cut(s) 326, 370, 412, 466, 579, 1132
SsiI CCGC 5 cut(s) 117, 342, 626, 869, 1068
SspMI CTAG 1 cut(s) 749
StyD4I CCNGG 2 cut(s) 830, 1111
TaaI ACNGT 6 cut(s) 272, 277, 284, 724, 952, 985
TaiI ACGT 2 cut(s) 360, 792
TaqI TCGA 5 cut(s) 519, 810, 954, 990, 1039
TasI AATT 6 cut(s) 326, 370, 412, 466, 579, 1132
TfiI GAWTC 6 cut(s) 211, 289, 516, 575, 664, 859
Tru1I TTAA 1 cut(s) 803
Tru9I TTAA 1 cut(s) 803
TscAI CASTG 3 cut(s) 727, 842, 1069
TseFI GTSAC 2 cut(s) 353, 1193
TseI GCWGC 2 cut(s) 249, 490
Tsp45I GTSAC 2 cut(s) 353, 1193
TspDTI ATGAA 4 cut(s) 75, 956, 1020, 1125
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 3 cut(s) 727, 842, 1069
Van91I CCANNNNNTGG 1 cut(s) 837
Vha464I CTTAAG 1 cut(s) 802
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 1 cut(s) 326
XceI RCATGY 1 cut(s) 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 770
XspI CTAG 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.