MD11G1287300.v1.1

protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
40703471 .. 40707331
3861 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1287300.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGCGGATAACAATCCCACGCCTCCGCACCAAACAGAGGAAAACACAGTGACTCACTTGGACTTCTTAAAGAAACTCAAACGCTCCAACCCTCTGGAACCTTTTCTGGGAATTCTTGGGTTCTTCCTGGTCGCTCTTCTCTTCGTCAGCTGCTTCTCCTTCTTGGATTACCGTACAGTTTTCAGTGGGATTTTGGGGCTGCCATCAAAAGGGAATGGACGGTTTGGATTTCTTGAGGAAGGCGGCGATGGGTGTGATGTGTTTGATGGGAACTGGGTTTGGGATGAGAGCTATCCTTTGTACGAGTCACATAACTGTAGCTTTTTAGATGAGGGGTTCAGATGTTCTGAGAATGGCAGGCCTGATAATTTCTACACCAAGTGGCGTTGGCAGCCCAAAGATTGCACCTTGCCCAGATTCGATGCAGGGAAGATGTTGGACAAGCTTTGGAACCGGCGTGTTGTATTTGTTGGTGACTCAATTGGAAGGAACCAATGGGAGTCTCTTCTCTGCATGCTCTCCTCTGCAGTTACTAACAAGACTTCAATCTATGAAGTGAATGGGAGTCCAATCACAAAGCATTCGGGGTTCTTGGTATACAAGTTTGAGGACTTCAATTGCACTGTGGAATACTACAGAGCACCATTTTTAGTCTTTCAGGGCCACCCTCCTGCTGGCGCTCCGGAAAACGTGAAGATGACCTTAAGGGTGGATCGACTGGAAAGGACTTCCAGGCAGTGGAGAGATGCGGATGTGCTGATTCTCAACTCGGGGCATTGGTGGAATTATGAGAAGACCATACGAGATGGTTGCTACTTCCAAGAAGGGGAGGAGGTGAAGATGAATATGACTGTTGAAACAGCATTTCGTAGATCGTTAGATACTGTGATTGATTGGATTGGCAATGAAGTGAACATGAGCAAGTCTTATGTCCTCTTTCGAACTTATGCTCCCGTGCATTTCAGTGGTGGTGATTGGAATACTGGTGGTGGTTGTCAGTTGGAGAAACTACCTGGATTAAGTTTGTCGCCCAATTCATCTGAAAGTGTTTACAAGACTATCTTTGATCTCATATCAGAGCGTTCAAATGAGTCACATGTTAGGAAACTGGATTTGCTCAAAGTGACGAACATGTCTTTGTGGAGAAAAGATGGCCATGCCTCTGTATACTATCTAGGGCCTGAGACTGGACCAGCCTCCGTCCACCATCAAGACTGCAGCCACTGGTGCCTCCCAGGTGTGCCTGATTCATGGAACGAGCTACTGTATGCACTCTTCCTTAAACGGGAATCCAGTCGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

49.74

Weight (kDa)

5.88

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 84 - 135 1.3e-22 PMR5 N terminal Domain
PC-Esterase PF13839 137 - 424 1.3e-94 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015547)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1132
AccB1I GGYRCC 1 cut(s) 1227
AccB7I CCANNNNNTGG 1 cut(s) 738
AccI GTMKAC 2 cut(s) 597, 1167
AccII CGCG 1 cut(s) 1299
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 4 cut(s) 5, 26, 243, 749
AclWI GGATC 1 cut(s) 720
AcoI YGGCCR 1 cut(s) 1153
AcsI RAATTY 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 381
AfaI GTAC 2 cut(s) 175, 302
AfiI CCNNNNNNNGG 8 cut(s) 37, 107, 209, 674, 738, 826, 1187, 1285
AflII CTTAAG 1 cut(s) 703
AflIII ACRYGT 2 cut(s) 1096, 1131
AgsI TTSAA 4 cut(s) 546, 616, 857, 1086
AjnI CCWGG 4 cut(s) 126, 731, 1012, 1234
AloI GAACNNNNNNTCC 2 cut(s) 934, 966
AluBI AGCT 5 cut(s) 150, 291, 321, 445, 1261
AluI AGCT 5 cut(s) 150, 291, 321, 445, 1261
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 2 cut(s) 507, 1178
AlwI GGATC 1 cut(s) 720
AlwNI CAGNNNCTG 1 cut(s) 1224
Ama87I CYCGRG 1 cut(s) 769
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 4 cut(s) 359, 661, 1153, 1178
ApeKI GCWGC 4 cut(s) 150, 199, 391, 1218
ApoI RAATTY 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 2 cut(s) 680, 1301
AspS9I GGNCC 3 cut(s) 661, 1178, 1190
AsuHPI GGTGA 3 cut(s) 485, 847, 983
AsuII TTCGAA 1 cut(s) 940
AvaI CYCGRG 1 cut(s) 769
AvaII GGWCC 1 cut(s) 1190
BalI TGGCCA 1 cut(s) 1155
BanI GGYRCC 1 cut(s) 1227
BarI GAAGNNNNNNTAC 2 cut(s) 1259, 1291
BbsI GAAGAC 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 4 cut(s) 137, 186, 403, 1230
BccI CCATC 6 cut(s) 211, 242, 260, 800, 1145, 1215
BcgI CGANNNNNNTGC 2 cut(s) 792, 826
BciT130I CCWGG 4 cut(s) 128, 733, 1014, 1236
BcoDI GTCTC 2 cut(s) 507, 1178
BfaI CTAG 1 cut(s) 1175
BfmI CTRYAG 4 cut(s) 316, 525, 634, 1216
BfoI RGCGCY 1 cut(s) 681
BfrI CTTAAG 1 cut(s) 703
BisI GCNGC 5 cut(s) 151, 200, 244, 392, 1219
BlsI GCNGC 5 cut(s) 152, 201, 245, 393, 1220
Bme1390I CCNGG 4 cut(s) 128, 733, 1014, 1236
Bme18I GGWCC 1 cut(s) 1190
BmeT110I CYCGRG 1 cut(s) 769
BmgT120I GGNCC 3 cut(s) 661, 1178, 1190
BmiI GGNNCC 4 cut(s) 99, 452, 491, 1229
BmrFI CCNGG 4 cut(s) 128, 733, 1014, 1236
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 412, 736
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 800
Bpu14I TTCGAA 1 cut(s) 940
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 1234
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 8 cut(s) 37, 107, 209, 674, 738, 826, 1187, 1285
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 7 cut(s) 278, 723, 988, 1113, 1192, 1229, 1293
Bse3DI GCAATG 1 cut(s) 910
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 682
BseBI CCWGG 4 cut(s) 128, 733, 1014, 1236
BseDI CCNNGG 1 cut(s) 1234
BseGI GGATG 2 cut(s) 289, 757
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 8 cut(s) 37, 107, 209, 674, 738, 826, 1187, 1285
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 2 cut(s) 339, 1173
BseNI ACTGG 7 cut(s) 278, 723, 988, 1113, 1192, 1229, 1293
BseRI GAGGAG 2 cut(s) 511, 845
BseXI GCAGC 4 cut(s) 137, 186, 403, 1230
Bsh1236I CGCG 1 cut(s) 1299
BshFI GGCC 4 cut(s) 361, 663, 1155, 1180
BshNI GGYRCC 1 cut(s) 1227
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 769
BsiSI CCGG 2 cut(s) 454, 683
BslI CCNNNNNNNGG 8 cut(s) 37, 107, 209, 674, 738, 826, 1187, 1285
BsmAI GTCTC 2 cut(s) 507, 1178
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 4 cut(s) 361, 663, 1155, 1180
BsoBI CYCGRG 1 cut(s) 769
Bsp119I TTCGAA 1 cut(s) 940
Bsp1286I GDGCHC 1 cut(s) 643
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 3 cut(s) 712, 872, 1066
BspACI CCGC 4 cut(s) 5, 26, 243, 749
BspANI GGCC 4 cut(s) 361, 663, 1155, 1180
BspCNI CTCAG 2 cut(s) 340, 1174
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 1299
BspLI GGNNCC 4 cut(s) 99, 452, 491, 1229
BspMAI CTGCAG 2 cut(s) 529, 1220
BspPI GGATC 1 cut(s) 720
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 940
BspT107I GGYRCC 1 cut(s) 1227
BspTI CTTAAG 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 910
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 7 cut(s) 278, 723, 988, 1113, 1192, 1229, 1293
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 1234
BssMI GATC 3 cut(s) 712, 872, 1066
BssNAI GTATAC 2 cut(s) 598, 1168
Bst1107I GTATAC 2 cut(s) 598, 1168
Bst2UI CCWGG 4 cut(s) 128, 733, 1014, 1236
Bst4CI ACNGT 9 cut(s) 49, 173, 178, 222, 317, 625, 853, 886, 1266
Bst6I CTCTTC 4 cut(s) 141, 146, 510, 1280
BstAFI CTTAAG 1 cut(s) 703
BstBI TTCGAA 1 cut(s) 940
BstC8I GCNNGC 3 cut(s) 359, 515, 676
BstDEI CTNAG 2 cut(s) 348, 1182
BstF5I GGATG 2 cut(s) 289, 757
BstFNI CGCG 1 cut(s) 1299
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 2 cut(s) 680, 1301
BstKTI GATC 3 cut(s) 715, 875, 1069
BstMAI GTCTC 2 cut(s) 507, 1178
BstMBI GATC 3 cut(s) 712, 872, 1066
BstMWI GCNNNNNNNGC 2 cut(s) 391, 1227
BstNI CCWGG 4 cut(s) 128, 733, 1014, 1236
BstNSI RCATGY 3 cut(s) 517, 1100, 1135
BstSCI CCNGG 4 cut(s) 126, 731, 1012, 1234
BstSFI CTRYAG 4 cut(s) 316, 525, 634, 1216
BstUI CGCG 1 cut(s) 1299
BstV1I GCAGC 4 cut(s) 137, 186, 403, 1230
BstV2I GAAGAC 1 cut(s) 800
BstXI CCANNNNNNTGG 1 cut(s) 94
BstZ17I GTATAC 2 cut(s) 598, 1168
BsuRI GGCC 4 cut(s) 361, 663, 1155, 1180
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 289, 757
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 6 cut(s) 54, 190, 621, 743, 970, 1222
Cac8I GCNNGC 3 cut(s) 359, 515, 676
CaiI CAGNNNCTG 1 cut(s) 1224
CfoI GCGC 2 cut(s) 680, 1301
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 3 cut(s) 661, 1178, 1190
Csp6I GTAC 2 cut(s) 174, 301
CviAII CATG 7 cut(s) 514, 916, 1097, 1132, 1157, 1251, 1302
CviQI GTAC 2 cut(s) 174, 301
DdeI CTNAG 2 cut(s) 348, 1182
DpnI GATC 3 cut(s) 714, 874, 1068
DpnII GATC 3 cut(s) 712, 872, 1066
DraIII CACNNNGTG 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 1132
DseDI GACNNNNNNGTC 1 cut(s) 1132
EaeI YGGCCR 1 cut(s) 1153
Eam1104I CTCTTC 4 cut(s) 141, 146, 510, 1280
EarI CTCTTC 4 cut(s) 141, 146, 510, 1280
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 1190
Eco88I CYCGRG 1 cut(s) 769
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 4 cut(s) 126, 731, 1012, 1234
FaeI CATG 7 cut(s) 517, 919, 1100, 1135, 1160, 1254, 1305
FalI AAGNNNNNCTT 4 cut(s) 686, 718, 1046, 1078
FatI CATG 7 cut(s) 513, 915, 1096, 1131, 1156, 1250, 1301
FblI GTMKAC 2 cut(s) 597, 1167
Fnu4HI GCNGC 5 cut(s) 151, 200, 244, 392, 1219
FokI GGATG 2 cut(s) 296, 764
Fsp4HI GCNGC 5 cut(s) 151, 200, 244, 392, 1219
FspBI CTAG 1 cut(s) 1175
GlaI GCGC 2 cut(s) 679, 1300
GluI GCNGC 5 cut(s) 151, 200, 244, 392, 1219
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 4 cut(s) 361, 663, 1155, 1180
HapII CCGG 2 cut(s) 454, 683
HhaI GCGC 2 cut(s) 680, 1301
Hin1II CATG 7 cut(s) 517, 919, 1100, 1135, 1160, 1254, 1305
Hin6I GCGC 2 cut(s) 678, 1299
HinP1I GCGC 2 cut(s) 678, 1299
HindIII AAGCTT 1 cut(s) 443
HpaII CCGG 2 cut(s) 454, 683
HphI GGTGA 3 cut(s) 485, 847, 983
Hpy166II GTNNAC 5 cut(s) 598, 913, 1051, 1168, 1204
Hpy188I TCNGA 4 cut(s) 341, 349, 1042, 1078
Hpy188III TCNNGA 4 cut(s) 95, 233, 683, 1211
Hpy8I GTNNAC 5 cut(s) 598, 913, 1051, 1168, 1204
HpyAV CCTTC 4 cut(s) 169, 233, 480, 818
HpyCH4III ACNGT 9 cut(s) 49, 173, 178, 222, 317, 625, 853, 886, 1266
HpyCH4IV ACGT 1 cut(s) 690
HpyCH4V TGCA 8 cut(s) 405, 425, 513, 527, 621, 958, 1218, 1271
HpyF10VI GCNNNNNNNGC 2 cut(s) 391, 1227
HpyF3I CTNAG 2 cut(s) 348, 1182
HpySE526I ACGT 1 cut(s) 690
Hsp92II CATG 7 cut(s) 517, 919, 1100, 1135, 1160, 1254, 1305
HspAI GCGC 2 cut(s) 678, 1299
Kpn2I TCCGGA 1 cut(s) 682
Kzo9I GATC 3 cut(s) 712, 872, 1066
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 3 cut(s) 89, 685, 955
Lsp1109I GCAGC 4 cut(s) 137, 186, 403, 1230
LweI GCATC 2 cut(s) 412, 736
MaeI CTAG 1 cut(s) 1175
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 6 cut(s) 49, 306, 473, 529, 1092, 1123
MalI GATC 3 cut(s) 714, 874, 1068
MboI GATC 3 cut(s) 712, 872, 1066
MboII GAAGA 9 cut(s) 115, 128, 133, 442, 497, 706, 805, 850, 1267
MfeI CAATTG 2 cut(s) 480, 616
MhlI GDGCHC 1 cut(s) 643
MlsI TGGCCA 1 cut(s) 1155
MluCI AATT 6 cut(s) 111, 367, 480, 616, 784, 1033
MluNI TGGCCA 1 cut(s) 1155
MlyI GAGTC 6 cut(s) 46, 314, 470, 509, 574, 1100
MmeI TCCRAC 3 cut(s) 111, 417, 981
Mox20I TGGCCA 1 cut(s) 1155
MroI TCCGGA 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 102
MscI TGGCCA 1 cut(s) 1155
MseI TTAA 4 cut(s) 68, 704, 1019, 1281
MslI CAYNNNNRTG 1 cut(s) 963
Msp20I TGGCCA 1 cut(s) 1155
MspA1I CMGCKG 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 2 cut(s) 454, 683
MspR9I CCNGG 4 cut(s) 128, 733, 1014, 1236
MunI CAATTG 2 cut(s) 480, 616
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 4 cut(s) 128, 733, 1014, 1236
MvnI CGCG 1 cut(s) 1299
MwoI GCNNNNNNNGC 2 cut(s) 391, 1227
NdeII GATC 3 cut(s) 712, 872, 1066
NlaIII CATG 7 cut(s) 517, 919, 1100, 1135, 1160, 1254, 1305
NlaIV GGNNCC 4 cut(s) 99, 452, 491, 1229
NmuCI GTSAC 5 cut(s) 49, 306, 473, 1092, 1123
NspI RCATGY 3 cut(s) 517, 1100, 1135
NspV TTCGAA 1 cut(s) 940
PaeI GCATGC 1 cut(s) 517
PceI AGGCCT 1 cut(s) 361
PciI ACATGT 2 cut(s) 1096, 1131
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 4 cut(s) 417, 760, 1247, 1289
PflMI CCANNNNNTGG 1 cut(s) 738
PkrI GCNGC 5 cut(s) 152, 201, 245, 393, 1220
PleI GAGTC 6 cut(s) 46, 313, 470, 508, 573, 1099
PpsI GAGTC 6 cut(s) 46, 313, 470, 508, 573, 1099
PscI ACATGT 2 cut(s) 1096, 1131
Psp6I CCWGG 4 cut(s) 126, 731, 1012, 1234
PspGI CCWGG 4 cut(s) 126, 731, 1012, 1234
PspN4I GGNNCC 4 cut(s) 99, 452, 491, 1229
PspPI GGNCC 3 cut(s) 661, 1178, 1190
PstI CTGCAG 2 cut(s) 529, 1220
PstNI CAGNNNCTG 1 cut(s) 1224
PvuII CAGCTG 1 cut(s) 150
RsaI GTAC 2 cut(s) 175, 302
RsaNI GTAC 2 cut(s) 174, 301
RseI CAYNNNNRTG 1 cut(s) 963
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 4 cut(s) 68, 704, 1019, 1281
SatI GCNGC 5 cut(s) 151, 200, 244, 392, 1219
Sau3AI GATC 3 cut(s) 712, 872, 1066
Sau96I GGNCC 3 cut(s) 661, 1178, 1190
SchI GAGTC 6 cut(s) 46, 314, 470, 509, 574, 1100
ScrFI CCNGG 4 cut(s) 128, 733, 1014, 1236
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 2 cut(s) 412, 736
SfcI CTRYAG 4 cut(s) 316, 525, 634, 1216
SfuI TTCGAA 1 cut(s) 940
SinI GGWCC 1 cut(s) 1190
SmiMI CAYNNNNRTG 1 cut(s) 963
SmlI CTYRAG 2 cut(s) 233, 703
SmoI CTYRAG 2 cut(s) 233, 703
SphI GCATGC 1 cut(s) 517
Sse9I AATT 6 cut(s) 111, 367, 480, 616, 784, 1033
SseBI AGGCCT 1 cut(s) 361
SsiI CCGC 4 cut(s) 5, 26, 243, 749
SspMI CTAG 1 cut(s) 1175
StuI AGGCCT 1 cut(s) 361
StyD4I CCNGG 4 cut(s) 126, 731, 1012, 1234
TaaI ACNGT 9 cut(s) 49, 173, 178, 222, 317, 625, 853, 886, 1266
TaiI ACGT 1 cut(s) 693
TaqI TCGA 3 cut(s) 420, 715, 940
TasI AATT 6 cut(s) 111, 367, 480, 616, 784, 1033
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 4 cut(s) 417, 760, 1247, 1289
Tru1I TTAA 4 cut(s) 68, 704, 1019, 1281
Tru9I TTAA 4 cut(s) 68, 704, 1019, 1281
TscAI CASTG 6 cut(s) 54, 190, 628, 743, 970, 1229
TseFI GTSAC 5 cut(s) 49, 306, 473, 1092, 1123
TseI GCWGC 4 cut(s) 150, 199, 391, 1218
Tsp45I GTSAC 5 cut(s) 49, 306, 473, 1092, 1123
TspDTI ATGAA 5 cut(s) 567, 857, 921, 1026, 1239
TspGWI ACGGA 1 cut(s) 1189
TspRI CASTG 6 cut(s) 54, 190, 628, 743, 970, 1229
Van91I CCANNNNNTGG 1 cut(s) 738
Vha464I CTTAAG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 1190
XapI RAATTY 1 cut(s) 111
XceI RCATGY 3 cut(s) 517, 1100, 1135
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XmiI GTMKAC 2 cut(s) 597, 1167
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.