FvH4_2g24090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016761
Physical Location & Seq
Forward (+)
19662116 .. 19663287
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24090.t1

Sequence Viewer

Length: 768 bp
ATGGGAAAGAATATCAATGGTACTAGTACTGCAGATTCATCAGGAGTGTGTGAGAAACTCTTCAGTGTCATTACAGCCAGTCCTGCCTTTCAGACAATCCGCCGACTCTCCTCACCTGCTAGAGATCGTTCCCCACTGGCAGACCGCAATCATGTTGCAGGAAAGAAAATAATTGACATCCAAAGCAAACCTCAACAACCCAACAAGTCAGTGAATCGAGTGATTCAGGTTCCCATCAAGTTTGAAAAGACAGAAGTTCTGCCGCCTGTTAGTACTCCAAATGAGAATGGAGGAAAGTTGTTAACCTCACACAAGGCTGCTGCTAAGATTGAACCTGAACCGGCAGAGGTGGCCCGAAAGAAGGTAATTGCTATTGAACACATTACTCATGGCCAGGGGGAAAAGAAGGAGAAGCAGAAGTCTAAGTCCGGGTCATCACTGGTAAAAGGAGCAGCTGGGAAGGGGCAACATATCAATGCTGCTATGGAAGTTGAGAAAGCACAGCAAGTACAAGTTAAGAATGAAGGTGAGAAACATGCAGGAGGAGTGGATATCAATGATAAGTTTTCACAATATATTACTCAAGCTAAGATTAAGATCAGAACCATGTCATCAAAGAAGATACAAGATTCTGATCATGAGGGTAATGATGGTGGTAAGGACGTCCATTTTTCTAATTTTATTGATCGTACGAAAAATAAGTTCAAATCTAGCACATCAAATGTTGGTGGTACCGGAAAGACTGTCTCGTTTAAGAGAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.64

Weight (kDa)

9.88

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016761)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24090
prunus_persica Prupe.8G247000_v2.0.a1
pyrus_communis pycom03g21550 pycom11g25820
rosa_chinensis RchiOBHm_Chr6g0291871
rosa_laevigata RLG00000012081
rosa_multiflora Rmu_sc0002484.1_g000002
rosa_roxburghii Rroxscaffold_7G00175670
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335000 Rh6BG342400 Rh6CG348400 Rh6DG335200
rosa_wichuraiana Rw6G029150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 124
AatII GACGTC 1 cut(s) 666
Acc36I ACCTGC 1 cut(s) 124
Acc65I GGTACC 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 731
AciI CCGC 3 cut(s) 100, 145, 263
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 663
AfaI GTAC 6 cut(s) 22, 28, 274, 510, 691, 733
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 4 cut(s) 245, 332, 377, 706
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 2 cut(s) 455, 587
AluI AGCT 2 cut(s) 455, 587
Alw26I GTCTC 1 cut(s) 751
AoxI GGCC 2 cut(s) 351, 391
ApeKI GCWGC 4 cut(s) 317, 320, 452, 479
Asp700I GAANNNNTTC 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 731
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 105, 539
BalI TGGCCA 1 cut(s) 393
BanI GGYRCC 1 cut(s) 731
BbvI GCAGC 4 cut(s) 304, 307, 464, 466
BccI CCATC 2 cut(s) 242, 644
BciT130I CCWGG 1 cut(s) 395
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 751
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 3 cut(s) 24, 120, 711
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 124
BisI GCNGC 5 cut(s) 263, 318, 321, 453, 480
BlsI GCNGC 5 cut(s) 264, 319, 322, 454, 481
BmcAI AGTACT 2 cut(s) 28, 274
Bme1390I CCNGG 2 cut(s) 395, 430
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 231, 733
BmrFI CCNGG 2 cut(s) 395, 430
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 430
BsaBI GATNNNNATC 2 cut(s) 596, 633
BsaHI GRCGYC 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 734
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 3 cut(s) 78, 141, 444
Bse8I GATNNNNATC 2 cut(s) 596, 633
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 2 cut(s) 596, 633
BseLI CCNNNNNNNGG 1 cut(s) 361
BseNI ACTGG 3 cut(s) 78, 141, 444
BseRI GAGGAG 2 cut(s) 100, 558
BseXI GCAGC 4 cut(s) 304, 307, 464, 466
BseYI CCCAGC 1 cut(s) 455
BshFI GGCC 2 cut(s) 353, 393
BshNI GGYRCC 1 cut(s) 731
BsiSI CCGG 3 cut(s) 341, 429, 735
BsiWI CGTACG 1 cut(s) 689
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 751
BsnI GGCC 2 cut(s) 353, 393
Bsp143I GATC 5 cut(s) 124, 597, 634, 685, 760
BspACI CCGC 3 cut(s) 100, 145, 263
BspANI GGCC 2 cut(s) 353, 393
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 231, 733
BspMAI CTGCAG 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 3 cut(s) 78, 141, 444
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 5 cut(s) 124, 597, 634, 685, 760
BssNI GRCGYC 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 663
BstDEI CTNAG 3 cut(s) 324, 423, 588
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 5 cut(s) 127, 600, 637, 688, 763
BstMAI GTCTC 1 cut(s) 751
BstMBI GATC 5 cut(s) 124, 597, 634, 685, 760
BstMWI GCNNNNNNNGC 2 cut(s) 83, 350
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 393, 428
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 4 cut(s) 304, 307, 464, 466
BsuRI GGCC 2 cut(s) 353, 393
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 4 cut(s) 70, 134, 216, 437
BveI ACCTGC 1 cut(s) 124
CciI TCATGA 1 cut(s) 637
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 6 cut(s) 21, 27, 273, 509, 690, 732
CviAII CATG 5 cut(s) 152, 389, 536, 607, 638
CviJI RGCY 6 cut(s) 77, 317, 353, 393, 455, 587
CviKI_1 RGCY 6 cut(s) 77, 317, 353, 393, 455, 587
CviQI GTAC 6 cut(s) 21, 27, 273, 509, 690, 732
DdeI CTNAG 3 cut(s) 324, 423, 588
DpnI GATC 5 cut(s) 126, 599, 636, 687, 762
DpnII GATC 5 cut(s) 124, 597, 634, 685, 760
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 89
Eco32I GATATC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 393
EcoRV GATATC 1 cut(s) 553
FaeI CATG 5 cut(s) 155, 392, 539, 610, 641
FaiI YATR 8 cut(s) 153, 390, 471, 485, 537, 576, 608, 639
FatI CATG 5 cut(s) 151, 388, 535, 606, 637
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 5 cut(s) 263, 318, 321, 453, 480
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 5 cut(s) 263, 318, 321, 453, 480
FspBI CTAG 3 cut(s) 24, 120, 711
GluI GCNGC 5 cut(s) 263, 318, 321, 453, 480
GsaI CCCAGC 1 cut(s) 459
HaeIII GGCC 2 cut(s) 353, 393
HapII CCGG 3 cut(s) 341, 429, 735
Hin1I GRCGYC 1 cut(s) 663
Hin1II CATG 5 cut(s) 155, 392, 539, 610, 641
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 5 cut(s) 35, 105, 214, 223, 629
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 3 cut(s) 341, 429, 735
HphI GGTGA 2 cut(s) 105, 539
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 93, 602, 634
Hpy188III TCNNGA 2 cut(s) 42, 638
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 4 cut(s) 355, 400, 454, 518
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 3 cut(s) 32, 158, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 350
HpyF3I CTNAG 3 cut(s) 324, 423, 588
HpySE526I ACGT 1 cut(s) 663
Hsp92I GRCGYC 1 cut(s) 663
Hsp92II CATG 5 cut(s) 155, 392, 539, 610, 641
KpnI GGTACC 1 cut(s) 735
Ksp22I TGATCA 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 5 cut(s) 124, 597, 634, 685, 760
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 4 cut(s) 304, 307, 464, 466
MaeI CTAG 3 cut(s) 24, 120, 711
MaeII ACGT 1 cut(s) 663
MalI GATC 5 cut(s) 126, 599, 636, 687, 762
MboI GATC 5 cut(s) 124, 597, 634, 685, 760
MboII GAAGA 2 cut(s) 52, 631
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 171, 366, 676
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 7 cut(s) 121, 201, 284, 316, 340, 536, 634
Mox20I TGGCCA 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 59
MscI TGGCCA 1 cut(s) 393
MseI TTAA 4 cut(s) 302, 516, 594, 753
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 3 cut(s) 341, 429, 735
MspR9I CCNGG 2 cut(s) 395, 430
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 2 cut(s) 83, 350
NciI CCSGG 1 cut(s) 430
NdeII GATC 5 cut(s) 124, 597, 634, 685, 760
NlaIII CATG 5 cut(s) 155, 392, 539, 610, 641
NlaIV GGNNCC 2 cut(s) 231, 733
NspI RCATGY 1 cut(s) 539
PagI TCATGA 1 cut(s) 637
PaqCI CACCTGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 4 cut(s) 35, 214, 223, 629
Pfl23II CGTACG 1 cut(s) 689
PkrI GCNGC 5 cut(s) 264, 319, 322, 454, 481
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 1 cut(s) 393
PspLI CGTACG 1 cut(s) 689
PspN4I GGNNCC 2 cut(s) 231, 733
PspPI GGNCC 1 cut(s) 352
PstI CTGCAG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 6 cut(s) 22, 28, 274, 510, 691, 733
RsaNI GTAC 6 cut(s) 21, 27, 273, 509, 690, 732
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 4 cut(s) 302, 516, 594, 753
SatI GCNGC 5 cut(s) 263, 318, 321, 453, 480
Sau3AI GATC 5 cut(s) 124, 597, 634, 685, 760
Sau96I GGNCC 1 cut(s) 352
ScaI AGTACT 2 cut(s) 28, 274
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 395, 430
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 3 cut(s) 171, 366, 676
SsiI CCGC 3 cut(s) 100, 145, 263
SspMI CTAG 3 cut(s) 24, 120, 711
StyD4I CCNGG 2 cut(s) 393, 428
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 1 cut(s) 666
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 171, 366, 676
TatI WGTACW 3 cut(s) 26, 272, 508
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 4 cut(s) 35, 214, 223, 629
Tru1I TTAA 4 cut(s) 302, 516, 594, 753
Tru9I TTAA 4 cut(s) 302, 516, 594, 753
TscAI CASTG 4 cut(s) 70, 141, 216, 444
TseI GCWGC 4 cut(s) 317, 320, 452, 479
TspDTI ATGAA 2 cut(s) 27, 537
TspRI CASTG 4 cut(s) 70, 141, 216, 444
XceI RCATGY 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 3 cut(s) 24, 120, 711
ZraI GACGTC 1 cut(s) 664
ZrmI AGTACT 2 cut(s) 28, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.