Prupe.8G247000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016761
Physical Location & Seq
Forward (+)
21390818 .. 21392272
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G247000.1

Sequence Viewer

Length: 834 bp
ATGGGAAACAATGGCAATGTTTCTGCTGCCTCAGACTCAACCGGGGTTTGTGAGAAAATCTTTAGCGTCATCACAGTAACTCCTGCTTTTCGAACGATTCGCCGAATCGCTTCTGTCTCCCCTGCAAGATCAGATCCTCTAAATCTGCCAGCCAATAGTCATGTTAATGCTGTGAAGATTGTTGATGTTCAAATCAGTCCTCCACAACCCAAGAAATCAGCTCCGAAGGTGGTTCAAATTCCAATCACTTCTGAGAAAACAGTCCTGCCTCCTGCTGCTGCTGCTGCTCTAACTGTGCATGCTCAAAGGATCACCAAAGTGGCAAAGGTTTGCCAAGGACATCATGACCAAGGAAGCCCCAAGCACAAGGCAGAGCTGTTGACTCAGCCACGGAAAGCTACTGAGGAGGAGAAACAGAAGCCCAAGTACTCTGAGGCTCAGCCAAACAAGGCTACTTATTCAAAAGCTGAGGAGCAGGAGAAGCAGAAGCCTAAGCACTCTGAGTCTCCATTAAAAGGAGCTGTTGGGGAAGCACTGTACAATCATGATGCTGCTGTGAAAGTTCATGAGGCAGAGGCACCACAAGTTAAGAATGAAGGTAAGAAACCAGGAGGGCTGGATATTAATGACACGTTTTCTGAATATATCAACCAGGCAAAGATTAAGATCAGAACCATGTCGTCGAACAACATATCAGAATCAGATGATGATGCGAAGAAAAAAGAAAGTGTCAAAGACCATTTCTCTGATTATATTCATCGTGCAAAGAACAAGTTCAAATCTACACCCTCAAATCTTGGTGCTGGAAAGAGTGCTTCTTTCAAGAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.07

Weight (kDa)

9.55

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016761)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24090
prunus_persica Prupe.8G247000_v2.0.a1
pyrus_communis pycom03g21550 pycom11g25820
rosa_chinensis RchiOBHm_Chr6g0291871
rosa_laevigata RLG00000012081
rosa_multiflora Rmu_sc0002484.1_g000002
rosa_roxburghii Rroxscaffold_7G00175670
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335000 Rh6BG342400 Rh6CG348400 Rh6DG335200
rosa_wichuraiana Rw6G029150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 577
AclWI GGATC 2 cut(s) 128, 317
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 2 cut(s) 428, 539
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 5 cut(s) 191, 236, 462, 778, 823
AjnI CCWGG 2 cut(s) 607, 651
AleI CACNNNNGTG 1 cut(s) 317
AluBI AGCT 5 cut(s) 221, 376, 398, 467, 521
AluI AGCT 5 cut(s) 221, 376, 398, 467, 521
Alw26I GTCTC 2 cut(s) 121, 510
AlwI GGATC 2 cut(s) 128, 317
ApeKI GCWGC 6 cut(s) 26, 275, 278, 281, 284, 551
ApoI RAATTY 1 cut(s) 237
AseI ATTAAT 1 cut(s) 624
Asp700I GAANNNNTTC 2 cut(s) 109, 773
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 91
BanI GGYRCC 1 cut(s) 577
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 6 cut(s) 13, 262, 265, 268, 271, 538
BciT130I CCWGG 2 cut(s) 609, 653
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 121, 510
BisI GCNGC 6 cut(s) 27, 276, 279, 282, 285, 552
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 6 cut(s) 28, 277, 280, 283, 286, 553
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 3 cut(s) 43, 609, 653
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 3 cut(s) 43, 609, 653
BmsI GCATC 2 cut(s) 538, 700
Bpu10I CCTNAGC 2 cut(s) 468, 492
Bpu1102I GCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 665
BsaJI CCNNGG 4 cut(s) 42, 334, 349, 389
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse3DI GCAATG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 665
BseBI CCWGG 2 cut(s) 609, 653
BseDI CCNNGG 4 cut(s) 42, 334, 349, 389
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 8 cut(s) 45, 243, 393, 398, 423, 452, 459, 492
BseRI GAGGAG 3 cut(s) 419, 422, 485
BseXI GCAGC 6 cut(s) 13, 262, 265, 268, 271, 538
BshNI GGYRCC 1 cut(s) 577
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 121, 510
Bsp119I TTCGAA 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 4 cut(s) 128, 133, 309, 666
Bsp1720I GCTNAGC 1 cut(s) 438
BspCNI CTCAG 8 cut(s) 44, 244, 394, 397, 424, 451, 460, 493
BspHI TCATGA 3 cut(s) 343, 544, 565
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 2 cut(s) 128, 317
BspT104I TTCGAA 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 537
BssECI CCNNGG 4 cut(s) 42, 334, 349, 389
BssMI GATC 4 cut(s) 128, 133, 309, 666
BssT1I CCWWGG 2 cut(s) 334, 349
Bst2UI CCWGG 2 cut(s) 609, 653
Bst4CI ACNGT 4 cut(s) 76, 262, 295, 537
BstAUI TGTACA 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 150, 300
BstDEI CTNAG 9 cut(s) 31, 252, 384, 402, 432, 438, 468, 492, 501
BstDSI CCRYGG 1 cut(s) 389
BstKTI GATC 4 cut(s) 131, 136, 312, 669
BstMAI GTCTC 2 cut(s) 121, 510
BstMBI GATC 4 cut(s) 128, 133, 309, 666
BstMWI GCNNNNNNNGC 3 cut(s) 281, 284, 481
BstNI CCWGG 2 cut(s) 609, 653
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 41, 607, 651
BstV1I GCAGC 6 cut(s) 13, 262, 265, 268, 271, 538
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 150, 300
CciI TCATGA 3 cut(s) 343, 544, 565
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 427, 538
CviAII CATG 6 cut(s) 161, 299, 344, 545, 566, 676
CviQI GTAC 2 cut(s) 427, 538
DdeI CTNAG 9 cut(s) 31, 252, 384, 402, 432, 438, 468, 492, 501
DpnI GATC 4 cut(s) 130, 135, 311, 668
DpnII GATC 4 cut(s) 128, 133, 309, 666
Eco130I CCWWGG 2 cut(s) 334, 349
EcoRII CCWGG 2 cut(s) 607, 651
EcoT14I CCWWGG 2 cut(s) 334, 349
ErhI CCWWGG 2 cut(s) 334, 349
FaeI CATG 6 cut(s) 164, 302, 347, 548, 569, 679
FaiI YATR 9 cut(s) 162, 300, 345, 546, 567, 645, 677, 692, 753
FatI CATG 6 cut(s) 160, 298, 343, 544, 565, 675
Fnu4HI GCNGC 6 cut(s) 27, 276, 279, 282, 285, 552
Fsp4HI GCNGC 6 cut(s) 27, 276, 279, 282, 285, 552
GluI GCNGC 6 cut(s) 27, 276, 279, 282, 285, 552
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 55
Hin1II CATG 6 cut(s) 164, 302, 347, 548, 569, 679
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 6 cut(s) 35, 97, 105, 382, 503, 698
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 381
Hpy188III TCNNGA 4 cut(s) 344, 545, 566, 823
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 1 cut(s) 685
HpyAV CCTTC 2 cut(s) 220, 590
HpyCH4III ACNGT 4 cut(s) 76, 262, 295, 537
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 3 cut(s) 125, 298, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 284, 481
HpyF3I CTNAG 9 cut(s) 31, 252, 384, 402, 432, 438, 468, 492, 501
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 6 cut(s) 164, 302, 347, 548, 569, 679
Kzo9I GATC 4 cut(s) 128, 133, 309, 666
LmnI GCTCC 3 cut(s) 226, 472, 518
Lsp1109I GCAGC 6 cut(s) 13, 262, 265, 268, 271, 538
LweI GCATC 2 cut(s) 538, 700
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 1 cut(s) 76
MalI GATC 4 cut(s) 130, 135, 311, 668
MboI GATC 4 cut(s) 128, 133, 309, 666
MboII GAAGA 2 cut(s) 187, 727
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 237
MlyI GAGTC 3 cut(s) 29, 376, 512
MroXI GAANNNNTTC 2 cut(s) 109, 773
MseI TTAA 5 cut(s) 165, 512, 588, 624, 663
MslI CAYNNNNRTG 2 cut(s) 165, 317
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 3 cut(s) 43, 609, 653
MvaI CCWGG 2 cut(s) 609, 653
MwoI GCNNNNNNNGC 3 cut(s) 281, 284, 481
NciI CCSGG 1 cut(s) 43
NdeII GATC 4 cut(s) 128, 133, 309, 666
NlaIII CATG 6 cut(s) 164, 302, 347, 548, 569, 679
NlaIV GGNNCC 1 cut(s) 579
NspI RCATGY 1 cut(s) 302
NspV TTCGAA 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 317
PaeI GCATGC 1 cut(s) 302
PagI TCATGA 3 cut(s) 343, 544, 565
PdmI GAANNNNTTC 2 cut(s) 109, 773
PfeI GAWTC 3 cut(s) 97, 105, 698
PkrI GCNGC 6 cut(s) 28, 277, 280, 283, 286, 553
PleI GAGTC 3 cut(s) 29, 376, 511
PpsI GAGTC 3 cut(s) 29, 376, 511
PshBI ATTAAT 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 607, 651
PspGI CCWGG 2 cut(s) 607, 651
PspN4I GGNNCC 1 cut(s) 579
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 2 cut(s) 428, 539
RsaNI GTAC 2 cut(s) 427, 538
RseI CAYNNNNRTG 2 cut(s) 165, 317
SaqAI TTAA 5 cut(s) 165, 512, 588, 624, 663
SatI GCNGC 6 cut(s) 27, 276, 279, 282, 285, 552
Sau3AI GATC 4 cut(s) 128, 133, 309, 666
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 3 cut(s) 29, 376, 512
ScrFI CCNGG 3 cut(s) 43, 609, 653
SetI ASST 9 cut(s) 223, 231, 330, 378, 400, 469, 523, 601, 635
SfaNI GCATC 2 cut(s) 538, 700
SfuI TTCGAA 1 cut(s) 91
SmiMI CAYNNNNRTG 2 cut(s) 165, 317
SphI GCATGC 1 cut(s) 302
Sse9I AATT 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 41, 607, 651
StyI CCWWGG 2 cut(s) 334, 349
TaaI ACNGT 4 cut(s) 76, 262, 295, 537
TaiI ACGT 1 cut(s) 635
TaqI TCGA 2 cut(s) 91, 683
TasI AATT 1 cut(s) 237
TatI WGTACW 2 cut(s) 426, 537
TfiI GAWTC 3 cut(s) 97, 105, 698
Tru1I TTAA 5 cut(s) 165, 512, 588, 624, 663
Tru9I TTAA 5 cut(s) 165, 512, 588, 624, 663
TscAI CASTG 1 cut(s) 540
TseI GCWGC 6 cut(s) 26, 275, 278, 281, 284, 551
TspDTI ATGAA 3 cut(s) 554, 609, 746
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 1 cut(s) 540
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 1 cut(s) 237
XceI RCATGY 1 cut(s) 302
XmnI GAANNNNTTC 2 cut(s) 109, 773
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.