RchiOBHm_Chr6g0291871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016761
Physical Location & Seq
Forward (+)
54942785 .. 54943860
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26189

Sequence Viewer

Length: 831 bp
ATGCATCACCTCAAGCTCTCAGCTATCATTAAGTTTCAAACTTTATCATATATACTTGAATACTTCATGGAAAAGAATGGCAATGGTACTAGTACTACTACAGATTCATCAGGGGTGTGTGAGAAACTCTTCAGTGCCATTACAGCCAATCCTGCTTTTCAAACATTCCGCCGAATCTCCTCTCCTGCTAGAGATCGTTCCCCACTGGCAAACCTCAATCATGCTGCCGGAAAGAAAATAATTGATAACCAAAGCAAACCTCAACAGTCCAACAAGTCGGCAGTGATTCAGGTTCCCATCAAGTTTGAAAAGAAGGAGGTTCTGCCGCCTGCTAGTACTCCAAATGAGAACAGAGGAAAGTTGTCAACCTCACACAAGGCTGCTGCTAAGATTGAACCTGGACCAGCACAGGTGGCCCAAAAGAAGGTAATTGCTATTGAACACATTATTCATGGCCAGGAAGGCAAGAAGGAGAAGCACAAGACCAAGTCCGAGTCATTGCAGGCAAAAGGAGGAGCAGTTGGGGAGGGGCAACATATCAATGCTACTATGAAAGTTGTGAAAGCACAAGAAGTACAAGTTAAGAATGATGGTAAGAAACCAGGAGGAGTGGATATTAATGATAAGTTTTCTGAATATATCACTCGTGCTAAGATCAAGATCAGAACCATGTCATCAAAGAAGATACAAGAATTTGATCAGGAGGGTATTGATGGTAGTAAGGACGTCCATTTTTCTGCTTTTATTGATCGTGCAAAGAACAAGTTCAAATCTAGCAAATCGAATGTTGGTGGTACCGGAAAGACTGTCTCATTTAAGAGAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.25

Weight (kDa)

9.92

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016761)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24090
prunus_persica Prupe.8G247000_v2.0.a1
pyrus_communis pycom03g21550 pycom11g25820
rosa_chinensis RchiOBHm_Chr6g0291871
rosa_laevigata RLG00000012081
rosa_multiflora Rmu_sc0002484.1_g000002
rosa_roxburghii Rroxscaffold_7G00175670
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335000 Rh6BG342400 Rh6CG348400 Rh6DG335200
rosa_wichuraiana Rw6G029150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 729
Acc65I GGTACC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 794
AciI CCGC 2 cut(s) 169, 326
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 726
AfaI GTAC 5 cut(s) 88, 94, 337, 576, 796
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 7 cut(s) 38, 59, 161, 308, 395, 440, 769
AhlI ACTAGT 1 cut(s) 89
AjnI CCWGG 3 cut(s) 397, 456, 601
AluBI AGCT 2 cut(s) 16, 23
AluI AGCT 2 cut(s) 16, 23
Alw26I GTCTC 1 cut(s) 814
AoxI GGCC 2 cut(s) 414, 454
ApeKI GCWGC 3 cut(s) 224, 380, 383
ApoI RAATTY 1 cut(s) 692
AseI ATTAAT 1 cut(s) 618
Asp700I GAANNNNTTC 2 cut(s) 128, 764
Asp718I GGTACC 1 cut(s) 794
AspS9I GGNCC 2 cut(s) 401, 415
AvaII GGWCC 1 cut(s) 401
BalI TGGCCA 1 cut(s) 456
BanI GGYRCC 1 cut(s) 794
BauI CACGAG 1 cut(s) 645
BbvI GCAGC 3 cut(s) 211, 367, 370
BccI CCATC 3 cut(s) 305, 584, 707
BciT130I CCWGG 3 cut(s) 399, 458, 603
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 814
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 4 cut(s) 90, 189, 333, 774
BfmI CTRYAG 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 462
BisI GCNGC 4 cut(s) 225, 326, 381, 384
BlsI GCNGC 4 cut(s) 226, 327, 382, 385
BmcAI AGTACT 2 cut(s) 94, 337
Bme1390I CCNGG 3 cut(s) 399, 458, 603
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 401, 415
BmiI GGNNCC 2 cut(s) 294, 796
BmrFI CCNGG 3 cut(s) 399, 458, 603
BmsI GCATC 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 659
BsaHI GRCGYC 1 cut(s) 726
BsaWI WCCGGW 1 cut(s) 797
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 88, 497
Bse8I GATNNNNATC 1 cut(s) 659
BseBI CCWGG 3 cut(s) 399, 458, 603
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMI GCAATG 2 cut(s) 88, 497
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 3 cut(s) 169, 528, 621
BseXI GCAGC 3 cut(s) 211, 367, 370
BshFI GGCC 2 cut(s) 416, 456
BshNI GGYRCC 1 cut(s) 794
BsiSI CCGG 2 cut(s) 228, 798
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 814
BsnI GGCC 2 cut(s) 416, 456
Bsp143I GATC 6 cut(s) 193, 654, 660, 697, 748, 823
BspACI CCGC 2 cut(s) 169, 326
BspANI GGCC 2 cut(s) 416, 456
BspCNI CTCAG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 294, 796
BspT107I GGYRCC 1 cut(s) 794
BsrDI GCAATG 2 cut(s) 88, 497
BsrI ACTGG 1 cut(s) 210
BssMI GATC 6 cut(s) 193, 654, 660, 697, 748, 823
BssNI GRCGYC 1 cut(s) 726
BssSI CACGAG 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 3 cut(s) 399, 458, 603
Bst4CI ACNGT 2 cut(s) 267, 808
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 726
BstC8I GCNNGC 2 cut(s) 330, 504
BstDEI CTNAG 3 cut(s) 19, 387, 651
BstKTI GATC 6 cut(s) 196, 657, 663, 700, 751, 826
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 6 cut(s) 193, 654, 660, 697, 748, 823
BstMWI GCNNNNNNNGC 4 cut(s) 143, 152, 413, 462
BstNI CCWGG 3 cut(s) 399, 458, 603
BstSCI CCNGG 3 cut(s) 397, 456, 601
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 211, 367, 370
BsuRI GGCC 2 cut(s) 416, 456
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 3 cut(s) 139, 203, 288
Cac8I GCNNGC 2 cut(s) 330, 504
Cfr13I GGNCC 2 cut(s) 401, 415
Csp6I GTAC 5 cut(s) 87, 93, 336, 575, 795
CviAII CATG 4 cut(s) 67, 221, 452, 670
CviJI RGCY 6 cut(s) 16, 23, 146, 380, 416, 456
CviKI_1 RGCY 6 cut(s) 16, 23, 146, 380, 416, 456
CviQI GTAC 5 cut(s) 87, 93, 336, 575, 795
DdeI CTNAG 3 cut(s) 19, 387, 651
DpnI GATC 6 cut(s) 195, 656, 662, 699, 750, 825
DpnII GATC 6 cut(s) 193, 654, 660, 697, 748, 823
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 397, 456, 601
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 70, 224, 455, 673
FatI CATG 4 cut(s) 66, 220, 451, 669
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 4 cut(s) 225, 326, 381, 384
Fsp4HI GCNGC 4 cut(s) 225, 326, 381, 384
FspBI CTAG 4 cut(s) 90, 189, 333, 774
GluI GCNGC 4 cut(s) 225, 326, 381, 384
HaeIII GGCC 2 cut(s) 416, 456
HapII CCGG 2 cut(s) 228, 798
Hin1I GRCGYC 1 cut(s) 726
Hin1II CATG 4 cut(s) 70, 224, 455, 673
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 4 cut(s) 104, 174, 286, 494
HpaII CCGG 2 cut(s) 228, 798
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 493, 634, 665
Hpy188III TCNNGA 2 cut(s) 658, 701
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 4 cut(s) 307, 418, 455, 463
HpyCH4III ACNGT 2 cut(s) 267, 808
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 3 cut(s) 4, 502, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 152, 413, 462
HpyF3I CTNAG 3 cut(s) 19, 387, 651
HpySE526I ACGT 1 cut(s) 726
Hsp92I GRCGYC 1 cut(s) 726
Hsp92II CATG 4 cut(s) 70, 224, 455, 673
KpnI GGTACC 1 cut(s) 798
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 6 cut(s) 193, 654, 660, 697, 748, 823
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 3 cut(s) 211, 367, 370
LweI GCATC 1 cut(s) 13
MaeI CTAG 4 cut(s) 90, 189, 333, 774
MaeII ACGT 1 cut(s) 726
MalI GATC 6 cut(s) 195, 656, 662, 699, 750, 825
MboI GATC 6 cut(s) 193, 654, 660, 697, 748, 823
MboII GAAGA 2 cut(s) 121, 694
MlsI TGGCCA 1 cut(s) 456
MluCI AATT 3 cut(s) 240, 429, 692
MluNI TGGCCA 1 cut(s) 456
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 294
Mox20I TGGCCA 1 cut(s) 456
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 128, 764
MscI TGGCCA 1 cut(s) 456
MseI TTAA 4 cut(s) 30, 582, 618, 816
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 456
MspI CCGG 2 cut(s) 228, 798
MspR9I CCNGG 3 cut(s) 399, 458, 603
MvaI CCWGG 3 cut(s) 399, 458, 603
MwoI GCNNNNNNNGC 4 cut(s) 143, 152, 413, 462
NdeII GATC 6 cut(s) 193, 654, 660, 697, 748, 823
NlaIII CATG 4 cut(s) 70, 224, 455, 673
NlaIV GGNNCC 2 cut(s) 294, 796
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 2 cut(s) 128, 764
PfeI GAWTC 3 cut(s) 104, 174, 286
PflFI GACNNNGTC 1 cut(s) 487
PkrI GCNGC 4 cut(s) 226, 327, 382, 385
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 397, 456, 601
PspGI CCWGG 3 cut(s) 397, 456, 601
PspN4I GGNNCC 2 cut(s) 294, 796
PspPI GGNCC 2 cut(s) 401, 415
PsyI GACNNNGTC 1 cut(s) 487
RsaI GTAC 5 cut(s) 88, 94, 337, 576, 796
RsaNI GTAC 5 cut(s) 87, 93, 336, 575, 795
RseI CAYNNNNRTG 1 cut(s) 540
SaqAI TTAA 4 cut(s) 30, 582, 618, 816
SatI GCNGC 4 cut(s) 225, 326, 381, 384
Sau3AI GATC 6 cut(s) 193, 654, 660, 697, 748, 823
Sau96I GGNCC 2 cut(s) 401, 415
ScaI AGTACT 2 cut(s) 94, 337
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 3 cut(s) 399, 458, 603
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 3 cut(s) 240, 429, 692
SsiI CCGC 2 cut(s) 169, 326
SspMI CTAG 4 cut(s) 90, 189, 333, 774
StyD4I CCNGG 3 cut(s) 397, 456, 601
TaaI ACNGT 2 cut(s) 267, 808
TaiI ACGT 1 cut(s) 729
TaqI TCGA 1 cut(s) 782
TasI AATT 3 cut(s) 240, 429, 692
TatI WGTACW 3 cut(s) 92, 335, 574
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 3 cut(s) 104, 174, 286
Tru1I TTAA 4 cut(s) 30, 582, 618, 816
Tru9I TTAA 4 cut(s) 30, 582, 618, 816
TscAI CASTG 3 cut(s) 139, 210, 288
TseI GCWGC 3 cut(s) 224, 380, 383
TspDTI ATGAA 4 cut(s) 55, 96, 440, 566
TspRI CASTG 3 cut(s) 139, 210, 288
Tth111I GACNNNGTC 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 401
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 1 cut(s) 692
XmnI GAANNNNTTC 2 cut(s) 128, 764
XspI CTAG 4 cut(s) 90, 189, 333, 774
ZraI GACGTC 1 cut(s) 727
ZrmI AGTACT 2 cut(s) 94, 337
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.