pycom11g25820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016761
Physical Location & Seq
Forward (+)
28516981 .. 28517646
666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25820.1

Sequence Viewer

Length: 666 bp
ATGGAAAAGAATGGCAATAATCCTGCTGCAGCAGCATCAGATTCAGAGGGAGTGTGCCAGAAAATCTTCAGCGCCATCACAGTTTCTCCTGCATTTCGAACAGTTCGCCGAGCCACACATTTTCCACAAGAACCTACAGCTGCCTCCGCTGCTAGAAGCACGTATCCTCCACAACCACAACCCAAGAAGTCAGCTGAATCAGCACCGGTAGTGGTTCGGATTCCAATCACGTCCGAAAAAATAGTAGGGAAGGGCTGTGATGATAAAGCAAATTCCAAGGTTGCTGCGAAGATTGAACCCGAAAAACCTCCAACTCATCATGGTCTAGTGCACAAATACAAGGAAGAGTTGGCCAAGGCTACTCATTCAAAAGTTGAGGAGGACAAACATGAAGCACAAGCTCAAGCTAGGAATATTGAAGGAAAGAAACAAGGAGGATTGGATATTAATGACAAATTTTCGGAGTATATCAATCGGGCGAAGATCAAGATCAGATCAATGTCATCGAAGAAGATAGCGGAATCAGATGAGGTTGATTATGATGGAAAGAAAAGAGAGACTGGAAACGAACATTTTTCTGATTATATTCAACGTGCGAAGAACAAGTTCAGATCTACGCCGTCAAATCTTGGTGGTCGAAAGAATGCTTCCTTTAAGCGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.38

Weight (kDa)

9.6

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016761)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24090
prunus_persica Prupe.8G247000_v2.0.a1
pyrus_communis pycom03g21550 pycom11g25820
rosa_chinensis RchiOBHm_Chr6g0291871
rosa_laevigata RLG00000012081
rosa_multiflora Rmu_sc0002484.1_g000002
rosa_roxburghii Rroxscaffold_7G00175670
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335000 Rh6BG342400 Rh6CG348400 Rh6DG335200
rosa_wichuraiana Rw6G029150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 147, 518
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 2 cut(s) 271, 455
AcuI CTGAAG 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 205
AgsI TTSAA 4 cut(s) 296, 369, 419, 590
AjiI CACGTC 1 cut(s) 231
AluBI AGCT 4 cut(s) 140, 194, 401, 407
AluI AGCT 4 cut(s) 140, 194, 401, 407
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 551
Alw44I GTGCAC 1 cut(s) 329
AoxI GGCC 1 cut(s) 351
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 6 cut(s) 26, 29, 32, 140, 149, 284
ApoI RAATTY 2 cut(s) 271, 455
AseI ATTAAT 1 cut(s) 447
AsiGI ACCGGT 1 cut(s) 205
Asp700I GAANNNNTTC 2 cut(s) 65, 605
AspLEI GCGC 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 333
BalI TGGCCA 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 6 cut(s) 13, 41, 44, 127, 136, 271
BccI CCATC 2 cut(s) 83, 536
BceAI ACGGC 1 cut(s) 604
BciVI GTATCC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 3 cut(s) 153, 326, 408
BfmI CTRYAG 2 cut(s) 27, 135
BfoI RGCGCY 1 cut(s) 75
BfuI GTATCC 1 cut(s) 174
BglII AGATCT 1 cut(s) 611
BisI GCNGC 6 cut(s) 27, 30, 33, 141, 150, 285
BlsI GCNGC 6 cut(s) 28, 31, 34, 142, 151, 286
BmgBI CACGTC 1 cut(s) 231
BmsI GCATC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 2 cut(s) 224, 488
BsaJI CCNNGG 2 cut(s) 276, 354
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 151, 181
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 565
Bse8I GATNNNNATC 2 cut(s) 224, 488
BseDI CCNNGG 2 cut(s) 276, 354
BseJI GATNNNNATC 2 cut(s) 224, 488
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 6 cut(s) 13, 41, 44, 127, 136, 271
BshFI GGCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 483, 489, 494, 611
BspACI CCGC 2 cut(s) 147, 518
BspANI GGCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 276, 354
BssMI GATC 4 cut(s) 483, 489, 494, 611
BssT1I CCWWGG 2 cut(s) 276, 354
Bst4CI ACNGT 2 cut(s) 82, 103
Bst6I CTCTTC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 486, 492, 497, 614
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 4 cut(s) 483, 489, 494, 611
BstMWI GCNNNNNNNGC 4 cut(s) 32, 146, 149, 200
BstSFI CTRYAG 2 cut(s) 27, 135
BstSLI GKGCMC 1 cut(s) 333
BstV1I GCAGC 6 cut(s) 13, 41, 44, 127, 136, 271
BstX2I RGATCY 1 cut(s) 611
BstYI RGATCY 1 cut(s) 611
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 353
BtrI CACGTC 1 cut(s) 231
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 205
CviAII CATG 2 cut(s) 320, 389
CviJI RGCY 8 cut(s) 113, 140, 194, 255, 353, 359, 401, 407
CviKI_1 RGCY 8 cut(s) 113, 140, 194, 255, 353, 359, 401, 407
DpnI GATC 4 cut(s) 485, 491, 496, 613
DpnII GATC 4 cut(s) 483, 489, 494, 611
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 276, 354
Eco57I CTGAAG 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 276, 354
ErhI CCWWGG 2 cut(s) 276, 354
FaeI CATG 2 cut(s) 323, 392
FaiI YATR 5 cut(s) 321, 390, 468, 540, 585
FatI CATG 2 cut(s) 319, 388
Fnu4HI GCNGC 6 cut(s) 27, 30, 33, 141, 150, 285
Fsp4HI GCNGC 6 cut(s) 27, 30, 33, 141, 150, 285
FspBI CTAG 3 cut(s) 153, 326, 408
GlaI GCGC 1 cut(s) 73
GluI GCNGC 6 cut(s) 27, 30, 33, 141, 150, 285
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 74
Hin1II CATG 2 cut(s) 323, 392
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 4 cut(s) 41, 197, 220, 521
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 9 cut(s) 40, 46, 219, 235, 463, 494, 526, 580, 611
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 244, 413
HpyCH4III ACNGT 2 cut(s) 82, 103
HpyCH4IV ACGT 3 cut(s) 161, 230, 592
HpyCH4V TGCA 3 cut(s) 29, 92, 331
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 146, 149, 200
HpySE526I ACGT 3 cut(s) 161, 230, 592
Hsp92II CATG 2 cut(s) 323, 392
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 4 cut(s) 483, 489, 494, 611
LpnPI CCDG 5 cut(s) 36, 71, 102, 219, 546
Lsp1109I GCAGC 6 cut(s) 13, 41, 44, 127, 136, 271
LweI GCATC 1 cut(s) 44
MaeI CTAG 3 cut(s) 153, 326, 408
MaeII ACGT 3 cut(s) 161, 230, 592
MalI GATC 4 cut(s) 485, 491, 496, 613
MboI GATC 4 cut(s) 483, 489, 494, 611
MboII GAAGA 7 cut(s) 58, 301, 356, 493, 520, 523, 610
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 2 cut(s) 271, 455
MluNI TGGCCA 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 8 cut(s) 40, 154, 177, 318, 370, 373, 428, 523
Mox20I TGGCCA 1 cut(s) 353
MroXI GAANNNNTTC 2 cut(s) 65, 605
MscI TGGCCA 1 cut(s) 353
MseI TTAA 2 cut(s) 447, 654
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 3 cut(s) 140, 149, 194
MspI CCGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 649
MwoI GCNNNNNNNGC 4 cut(s) 32, 146, 149, 200
NdeII GATC 4 cut(s) 483, 489, 494, 611
NlaIII CATG 2 cut(s) 323, 392
NmeAIII GCCGAG 1 cut(s) 134
NspV TTCGAA 1 cut(s) 97
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 2 cut(s) 65, 605
PfeI GAWTC 4 cut(s) 41, 197, 220, 521
PinAI ACCGGT 1 cut(s) 205
PkrI GCNGC 6 cut(s) 28, 31, 34, 142, 151, 286
Ppu21I YACGTR 1 cut(s) 162
PshBI ATTAAT 1 cut(s) 447
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 611
PvuII CAGCTG 2 cut(s) 140, 194
SaqAI TTAA 2 cut(s) 447, 654
SatI GCNGC 6 cut(s) 27, 30, 33, 141, 150, 285
Sau3AI GATC 4 cut(s) 483, 489, 494, 611
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 2 cut(s) 27, 135
SfuI TTCGAA 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 2 cut(s) 271, 455
SsiI CCGC 2 cut(s) 147, 518
SspI AATATT 1 cut(s) 415
SspMI CTAG 3 cut(s) 153, 326, 408
StyI CCWWGG 2 cut(s) 276, 354
TaaI ACNGT 2 cut(s) 82, 103
TaiI ACGT 3 cut(s) 164, 233, 595
TaqI TCGA 3 cut(s) 97, 506, 637
TasI AATT 2 cut(s) 271, 455
TfiI GAWTC 4 cut(s) 41, 197, 220, 521
Tru1I TTAA 2 cut(s) 447, 654
Tru9I TTAA 2 cut(s) 447, 654
TseI GCWGC 6 cut(s) 26, 29, 32, 140, 149, 284
TspDTI ATGAA 1 cut(s) 405
VneI GTGCAC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 2 cut(s) 271, 455
XmnI GAANNNNTTC 2 cut(s) 65, 605
XspI CTAG 3 cut(s) 153, 326, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.