Rroxscaffold_7G00175670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016761
Physical Location & Seq
Reverse (-)
15155690 .. 15156752
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00175670.1

Sequence Viewer

Length: 771 bp
ATGGAAAAGAATGGTAATGGTACTGGTACTAGTACTACTACAGATTCATCAGGAGTGTGTGAGAAACTCTTCAATGCCATTACAGCCAATCCTGCTTTTCAAACAATCCGCCGAATCTCCTCTCCTGCTAGAGATCGTTCCCCCCTGGCAAATCTCAATCATGCTGCAGGAAAGAAAATAATTGATATCCAAAGCAAACCTCAACAATCCAACAAGTCGGCAGTGATTCAGGTACCCATCAAGTTTGAAAAGAAGGAGGTTCTGCAGCCTGCTAGTACTCCAAATGAGAATAGAGGAAAGTTGTCAACCTCACACAAGGCTGCTGCTAAGATTGAACCTGGAACAGCACAGGTGGCCCAAAAGAAGGTAATTGCTATTGAACACATTACTCATGGCCAGGAAGGCAAGAAGGAGAAGCACAAGACCAAGTCCGAGTCATTGCAGGCAAAAGGAGGAGCAGTTGGGGAGGGGCAACATATCAATGCTACTATGAAAGTTGTGAAAGCACAAGAAGTACAAGTTAAGAATGATGGTAAGAAACCAGGAGGAGTGGATATTAATGATAAGTTTTCTGAATATATCACTCGTGCTAAGATCAAGATCAGAACCATGTCATCAAAGAAGATACAAGAATCTGATCAGGAGGGTATGGATGGTGGTAAGGACGTCCATTTTTCTGCTTTTATTGATCGTGCAAAGAACAAGTTCAAATCTAGCACATCGAATGTTGGTGGTACCGGAAAGACTGTCTCATTTAAGAGAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.65

Weight (kDa)

9.93

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016761)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24090
prunus_persica Prupe.8G247000_v2.0.a1
pyrus_communis pycom03g21550 pycom11g25820
rosa_chinensis RchiOBHm_Chr6g0291871
rosa_laevigata RLG00000012081
rosa_multiflora Rmu_sc0002484.1_g000002
rosa_roxburghii Rroxscaffold_7G00175670
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335000 Rh6BG342400 Rh6CG348400 Rh6DG335200
rosa_wichuraiana Rw6G029150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 669
Acc65I GGTACC 2 cut(s) 232, 734
AccB1I GGYRCC 2 cut(s) 232, 734
AciI CCGC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 394
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 7 cut(s) 22, 28, 34, 234, 277, 516, 736
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 6 cut(s) 73, 101, 248, 335, 380, 709
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 4 cut(s) 144, 337, 396, 541
Alw26I GTCTC 1 cut(s) 754
AoxI GGCC 2 cut(s) 354, 394
ApeKI GCWGC 4 cut(s) 164, 265, 320, 323
AseI ATTAAT 1 cut(s) 558
Asp700I GAANNNNTTC 2 cut(s) 68, 704
Asp718I GGTACC 2 cut(s) 232, 734
AspS9I GGNCC 1 cut(s) 355
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 2 cut(s) 232, 734
BauI CACGAG 1 cut(s) 585
BbvI GCAGC 4 cut(s) 151, 277, 307, 310
BccI CCATC 3 cut(s) 245, 524, 647
BciT130I CCWGG 4 cut(s) 146, 339, 398, 543
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 754
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 4 cut(s) 30, 129, 273, 714
BfmI CTRYAG 3 cut(s) 39, 165, 263
BglI GCCNNNNNGGC 1 cut(s) 402
BisI GCNGC 4 cut(s) 165, 266, 321, 324
BlsI GCNGC 4 cut(s) 166, 267, 322, 325
BmcAI AGTACT 2 cut(s) 34, 277
Bme1390I CCNGG 4 cut(s) 146, 339, 398, 543
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 234, 736
BmrFI CCNGG 4 cut(s) 146, 339, 398, 543
BsaBI GATNNNNATC 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 666
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 437
Bse8I GATNNNNATC 1 cut(s) 599
BseBI CCWGG 4 cut(s) 146, 339, 398, 543
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 658
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 3 cut(s) 109, 468, 561
BseXI GCAGC 4 cut(s) 151, 277, 307, 310
BshFI GGCC 2 cut(s) 356, 396
BshNI GGYRCC 2 cut(s) 232, 734
BsiSI CCGG 1 cut(s) 738
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 754
BsnI GGCC 2 cut(s) 356, 396
Bsp143I GATC 6 cut(s) 133, 594, 600, 637, 688, 763
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 356, 396
BspLI GGNNCC 2 cut(s) 234, 736
BspMAI CTGCAG 2 cut(s) 169, 267
BspT107I GGYRCC 2 cut(s) 232, 734
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 6 cut(s) 133, 594, 600, 637, 688, 763
BssNI GRCGYC 1 cut(s) 666
BssSI CACGAG 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 4 cut(s) 146, 339, 398, 543
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 666
BstC8I GCNNGC 2 cut(s) 270, 444
BstDEI CTNAG 2 cut(s) 327, 591
BstF5I GGATG 1 cut(s) 658
BstKTI GATC 6 cut(s) 136, 597, 603, 640, 691, 766
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 6 cut(s) 133, 594, 600, 637, 688, 763
BstMWI GCNNNNNNNGC 4 cut(s) 83, 92, 353, 402
BstNI CCWGG 4 cut(s) 146, 339, 398, 543
BstSCI CCNGG 4 cut(s) 144, 337, 396, 541
BstSFI CTRYAG 3 cut(s) 39, 165, 263
BstV1I GCAGC 4 cut(s) 151, 277, 307, 310
BsuRI GGCC 2 cut(s) 356, 396
BtsCI GGATG 1 cut(s) 658
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 270, 444
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 7 cut(s) 21, 27, 33, 233, 276, 515, 735
CviAII CATG 3 cut(s) 161, 392, 610
CviJI RGCY 5 cut(s) 86, 268, 320, 356, 396
CviKI_1 RGCY 5 cut(s) 86, 268, 320, 356, 396
CviQI GTAC 7 cut(s) 21, 27, 33, 233, 276, 515, 735
DdeI CTNAG 2 cut(s) 327, 591
DpnI GATC 6 cut(s) 135, 596, 602, 639, 690, 765
DpnII GATC 6 cut(s) 133, 594, 600, 637, 688, 763
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 98
Eco32I GATATC 1 cut(s) 187
EcoRII CCWGG 4 cut(s) 144, 337, 396, 541
EcoRV GATATC 1 cut(s) 187
FaeI CATG 3 cut(s) 164, 395, 613
FaiI YATR 7 cut(s) 162, 393, 477, 491, 579, 611, 650
FatI CATG 3 cut(s) 160, 391, 609
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 4 cut(s) 165, 266, 321, 324
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 4 cut(s) 165, 266, 321, 324
FspBI CTAG 4 cut(s) 30, 129, 273, 714
GluI GCNGC 4 cut(s) 165, 266, 321, 324
HaeIII GGCC 2 cut(s) 356, 396
HapII CCGG 1 cut(s) 738
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 3 cut(s) 164, 395, 613
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 5 cut(s) 44, 114, 226, 434, 632
HpaII CCGG 1 cut(s) 738
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 4 cut(s) 433, 574, 605, 637
Hpy188III TCNNGA 3 cut(s) 51, 598, 641
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 4 cut(s) 247, 358, 395, 403
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 4 cut(s) 167, 265, 442, 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 92, 353, 402
HpyF3I CTNAG 2 cut(s) 327, 591
HpySE526I ACGT 1 cut(s) 666
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 3 cut(s) 164, 395, 613
KpnI GGTACC 2 cut(s) 236, 738
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 6 cut(s) 133, 594, 600, 637, 688, 763
LmnI GCTCC 1 cut(s) 455
Lsp1109I GCAGC 4 cut(s) 151, 277, 307, 310
MaeI CTAG 4 cut(s) 30, 129, 273, 714
MaeII ACGT 1 cut(s) 666
MalI GATC 6 cut(s) 135, 596, 602, 639, 690, 765
MboI GATC 6 cut(s) 133, 594, 600, 637, 688, 763
MboII GAAGA 2 cut(s) 61, 634
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 2 cut(s) 180, 369
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 9 cut(s) 130, 210, 250, 287, 319, 446, 460, 539, 637
Mox20I TGGCCA 1 cut(s) 396
MroXI GAANNNNTTC 2 cut(s) 68, 704
MscI TGGCCA 1 cut(s) 396
MseI TTAA 3 cut(s) 522, 558, 756
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 1 cut(s) 738
MspR9I CCNGG 4 cut(s) 146, 339, 398, 543
MvaI CCWGG 4 cut(s) 146, 339, 398, 543
MwoI GCNNNNNNNGC 4 cut(s) 83, 92, 353, 402
NdeII GATC 6 cut(s) 133, 594, 600, 637, 688, 763
NlaIII CATG 3 cut(s) 164, 395, 613
NlaIV GGNNCC 2 cut(s) 234, 736
PdmI GAANNNNTTC 2 cut(s) 68, 704
PfeI GAWTC 4 cut(s) 44, 114, 226, 632
PflFI GACNNNGTC 1 cut(s) 427
PkrI GCNGC 4 cut(s) 166, 267, 322, 325
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PshBI ATTAAT 1 cut(s) 558
Psp6I CCWGG 4 cut(s) 144, 337, 396, 541
PspGI CCWGG 4 cut(s) 144, 337, 396, 541
PspN4I GGNNCC 2 cut(s) 234, 736
PspPI GGNCC 1 cut(s) 355
PstI CTGCAG 2 cut(s) 169, 267
PsyI GACNNNGTC 1 cut(s) 427
RsaI GTAC 7 cut(s) 22, 28, 34, 234, 277, 516, 736
RsaNI GTAC 7 cut(s) 21, 27, 33, 233, 276, 515, 735
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 3 cut(s) 522, 558, 756
SatI GCNGC 4 cut(s) 165, 266, 321, 324
Sau3AI GATC 6 cut(s) 133, 594, 600, 637, 688, 763
Sau96I GGNCC 1 cut(s) 355
ScaI AGTACT 2 cut(s) 34, 277
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 4 cut(s) 146, 339, 398, 543
SetI ASST 8 cut(s) 202, 234, 261, 311, 340, 354, 369, 669
SfcI CTRYAG 3 cut(s) 39, 165, 263
SmiMI CAYNNNNRTG 1 cut(s) 480
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 2 cut(s) 180, 369
SsiI CCGC 1 cut(s) 109
SspMI CTAG 4 cut(s) 30, 129, 273, 714
StyD4I CCNGG 4 cut(s) 144, 337, 396, 541
TaaI ACNGT 1 cut(s) 748
TaiI ACGT 1 cut(s) 669
TaqI TCGA 1 cut(s) 722
TasI AATT 2 cut(s) 180, 369
TatI WGTACW 3 cut(s) 32, 275, 514
TfiI GAWTC 4 cut(s) 44, 114, 226, 632
Tru1I TTAA 3 cut(s) 522, 558, 756
Tru9I TTAA 3 cut(s) 522, 558, 756
TscAI CASTG 1 cut(s) 228
TseI GCWGC 4 cut(s) 164, 265, 320, 323
TspDTI ATGAA 2 cut(s) 36, 506
TspRI CASTG 1 cut(s) 228
Tth111I GACNNNGTC 1 cut(s) 427
VspI ATTAAT 1 cut(s) 558
XmnI GAANNNNTTC 2 cut(s) 68, 704
XspI CTAG 4 cut(s) 30, 129, 273, 714
ZraI GACGTC 1 cut(s) 667
ZrmI AGTACT 2 cut(s) 34, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.