Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018803

Physical Location & Seq

Genomic Coordinates Reverse (-)

22391008 .. 22392627

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTTTGGTGAAAAGAGGTCAGCTGATGATACTCACCGGAGCACCATCGGATTGACGATCCGTTATCTTGACGGTTCCAATCTCGGTGCAGCTGCAAGAAGTTTGGAGCGCCATTCGGGCTTGTTTTTCAATTACAAGTATTTCGAAGATTGCTTTGTTGGAGGAGATCTTGAAGAAGCTGAAGCTTATCTTAGCGGCTTTACATCCATAGATGACAATGATAATTCGACTATTCTCTTCTTTGACATTCGATGGCACAAGTTCCTCCAAGCTCTAGATTTAAAACAACGTCAAAGAGCTCGAAGAATTCTAAGGGAAGAACTGAATGATCATTTCCTCCATCTTATCAAAGATTATGCTGCCAAGATCCTAGCTGCGGCTAATTTCAGAGACGAGCTGAAAGGACTCAAGGACCTTGGAGAAGCAAGGCTGAAACTAATGGAGGAAGTCCGTACAAACATAGAGGCTAATCCGTCTCTAAAAGGCAAGATTGTGCATCCATCCACACCATTCCCAGCTTTGCCGCCACCTCCGGCGCCAGCAGGTCCAAGTACTACTGAAGCTGCTCGGAGCTCCACACCATTCCCAGCTTTGTACCTTGTTCCGGTGAATCTGCAGCCAGAGATACCTGCTACTTCGGCGGAGGCTCCCAGGCGAAACCGAGGTCGACCACGGGGACGGGGTCGGCGGAACAACTCCAGAGTGGATCCTCGTGCAGCTCCATCTGCTACCCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

248

Amino Acids

27.66

Weight (kDa)

9.63

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR1-like_2nd	PF21889	45 - 165	6.8e-24	TPR1-like, CTLH-containing domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28640
rosa_laevigata	RLG00000011601
rosa_multiflora	Rmu_sc0004989.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170530
rosa_rugosa	Rorug06G0271800
rosa_samantha	Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	536, 640
AccB1I	GGYRCC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	670
AciI	CCGC	5 cut(s)	198, 380, 527, 644, 691
AclWI	GGATC	4 cut(s)	55, 364, 704, 717
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	2 cut(s)	204, 582
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	3 cut(s)	457, 556, 599
AfiI	CCNNNNNNNGG	2 cut(s)	379, 607
AgsI	TTSAA	2 cut(s)	133, 176
AjnI	CCWGG	1 cut(s)	653
Alw21I	GWGCWC	3 cut(s)	47, 304, 578
Alw26I	GTCTC	2 cut(s)	387, 483
AlwI	GGATC	4 cut(s)	55, 364, 704, 717
ApeKI	GCWGC	7 cut(s)	92, 95, 362, 377, 566, 619, 719
ApoI	RAATTY	1 cut(s)	309
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AspLEI	GCGC	2 cut(s)	114, 541
AspS9I	GGNCC	2 cut(s)	415, 548
AsuHPI	GGTGA	3 cut(s)	23, 29, 622
AsuII	TTCGAA	1 cut(s)	147
AvaII	GGWCC	2 cut(s)	415, 548
BamHI	GGATCC	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	304, 578
BauI	CACGAG	1 cut(s)	714
Bbv12I	GWGCWC	3 cut(s)	47, 304, 578
BbvI	GCAGC	7 cut(s)	82, 104, 349, 364, 553, 631, 731
BccI	CCATC	5 cut(s)	56, 249, 351, 511, 733
BciT130I	CCWGG	1 cut(s)	655
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	387, 483
BfaI	CTAG	2 cut(s)	278, 374
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	2 cut(s)	115, 542
BfuAI	ACCTGC	2 cut(s)	536, 640
BglI	GCCNNNNNGGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	655
Bme18I	GGWCC	2 cut(s)	415, 548
BmgT120I	GGNCC	2 cut(s)	415, 548
BmiI	GGNNCC	4 cut(s)	79, 540, 651, 711
BmrFI	CCNGG	1 cut(s)	655
BmsI	GCATC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	685
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	4 cut(s)	418, 653, 664, 674
BsaWI	WCCGGW	2 cut(s)	39, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 607
BseBI	CCWGG	1 cut(s)	655
BseDI	CCNNGG	4 cut(s)	418, 653, 664, 674
BseGI	GGATG	3 cut(s)	206, 499, 503
BseLI	CCNNNNNNNGG	2 cut(s)	379, 607
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	7 cut(s)	82, 104, 349, 364, 553, 631, 731
BseYI	CCCAGC	2 cut(s)	517, 589
BsgI	GTGCAG	2 cut(s)	111, 738
BshNI	GGYRCC	1 cut(s)	538
BsiHKAI	GWGCWC	3 cut(s)	47, 304, 578
BsiSI	CCGG	3 cut(s)	40, 536, 608
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	379, 607
BsmAI	GTCTC	2 cut(s)	387, 483
BsmBI	CGTCTC	2 cut(s)	387, 483
BsmFI	GGGAC	1 cut(s)	693
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	3 cut(s)	47, 304, 578
Bsp143I	GATC	5 cut(s)	60, 169, 331, 369, 709
BspACI	CCGC	5 cut(s)	198, 380, 527, 644, 691
BspLI	GGNNCC	4 cut(s)	79, 540, 651, 711
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	2 cut(s)	536, 640
BspPI	GGATC	4 cut(s)	55, 364, 704, 717
BspT104I	TTCGAA	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	538
BssECI	CCNNGG	4 cut(s)	418, 653, 664, 674
BssMI	GATC	5 cut(s)	60, 169, 331, 369, 709
BssNI	GRCGYC	1 cut(s)	539
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	655
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	194, 314
BstDSI	CCRYGG	1 cut(s)	674
BstF5I	GGATG	3 cut(s)	206, 499, 503
BstH2I	RGCGCY	2 cut(s)	115, 542
BstHHI	GCGC	2 cut(s)	114, 541
BstKTI	GATC	5 cut(s)	63, 172, 334, 372, 712
BstMAI	GTCTC	2 cut(s)	387, 483
BstMBI	GATC	5 cut(s)	60, 169, 331, 369, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 641, 728
BstNI	CCWGG	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	653
BstSFI	CTRYAG	1 cut(s)	617
BstV1I	GCAGC	7 cut(s)	82, 104, 349, 364, 553, 631, 731
BstX2I	RGATCY	3 cut(s)	169, 369, 709
BstYI	RGATCY	3 cut(s)	169, 369, 709
BtgI	CCRYGG	1 cut(s)	674
BtsCI	GGATG	3 cut(s)	206, 499, 503
BveI	ACCTGC	2 cut(s)	536, 640
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	2 cut(s)	114, 541
Cfr13I	GGNCC	2 cut(s)	415, 548
Csp6I	GTAC	3 cut(s)	456, 555, 598
CviQI	GTAC	3 cut(s)	456, 555, 598
DdeI	CTNAG	2 cut(s)	194, 314
DinI	GGCGCC	1 cut(s)	540
DpnI	GATC	5 cut(s)	62, 171, 333, 371, 711
DpnII	GATC	5 cut(s)	60, 169, 331, 369, 709
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	2 cut(s)	659, 706
Ecl136II	GAGCTC	2 cut(s)	302, 576
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	304, 578
Eco47I	GGWCC	2 cut(s)	415, 548
Eco53kI	GAGCTC	2 cut(s)	302, 576
Eco57I	CTGAAG	2 cut(s)	204, 582
EcoICRI	GAGCTC	2 cut(s)	302, 576
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRI	GAATTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	304, 578
EgeI	GGCGCC	1 cut(s)	540
EheI	GGCGCC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	418
Esp3I	CGTCTC	2 cut(s)	387, 483
FaiI	YATR	3 cut(s)	212, 360, 464
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	693
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	670
FokI	GGATG	3 cut(s)	193, 486, 490
FriOI	GRGCYC	2 cut(s)	304, 578
FspBI	CTAG	2 cut(s)	278, 374
GlaI	GCGC	2 cut(s)	113, 540
GsaI	CCCAGC	2 cut(s)	521, 593
GsuI	CTGGAG	1 cut(s)	685
HaeII	RGCGCY	2 cut(s)	115, 542
HapII	CCGG	3 cut(s)	40, 536, 608
HhaI	GCGC	2 cut(s)	114, 541
Hin1I	GRCGYC	1 cut(s)	539
Hin6I	GCGC	2 cut(s)	112, 539
HinP1I	GCGC	2 cut(s)	112, 539
HincII	GTYRAC	1 cut(s)	671
HindII	GTYRAC	1 cut(s)	671
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	408, 613
HpaII	CCGG	3 cut(s)	40, 536, 608
HphI	GGTGA	3 cut(s)	23, 29, 622
Hpy166II	GTNNAC	1 cut(s)	671
Hpy188I	TCNGA	3 cut(s)	53, 392, 573
Hpy188III	TCNNGA	4 cut(s)	71, 173, 278, 702
Hpy8I	GTNNAC	1 cut(s)	671
Hpy99I	CGWCG	1 cut(s)	741
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	92, 98, 499, 619, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 641, 728
HpyF3I	CTNAG	2 cut(s)	194, 314
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	539
HspAI	GCGC	2 cut(s)	112, 539
KasI	GGCGCC	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	60, 169, 331, 369, 709
LmnI	GCTCC	6 cut(s)	42, 109, 573, 581, 655, 727
Lsp1109I	GCAGC	7 cut(s)	82, 104, 349, 364, 553, 631, 731
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	278, 374
MaeII	ACGT	1 cut(s)	292
MalI	GATC	5 cut(s)	62, 171, 333, 371, 711
MboI	GATC	5 cut(s)	60, 169, 331, 369, 709
MboII	GAAGA	5 cut(s)	161, 188, 232, 318, 332
MflI	RGATCY	3 cut(s)	169, 369, 709
MhlI	GDGCHC	3 cut(s)	47, 304, 578
MluCI	AATT	4 cut(s)	133, 226, 309, 385
Mly113I	GGCGCC	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	142
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	26, 95
MspI	CCGG	3 cut(s)	40, 536, 608
MspR9I	CCNGG	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	655
MwoI	GCNNNNNNNGC	3 cut(s)	120, 641, 728
NarI	GGCGCC	1 cut(s)	539
NdeII	GATC	5 cut(s)	60, 169, 331, 369, 709
NlaIV	GGNNCC	4 cut(s)	79, 540, 651, 711
NspV	TTCGAA	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	684
PleI	GAGTC	1 cut(s)	402
PluTI	GGCGCC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	402
PpuMI	RGGWCCY	1 cut(s)	415
Psp124BI	GAGCTC	2 cut(s)	304, 578
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	653
PspFI	CCCAGC	2 cut(s)	517, 589
PspGI	CCWGG	1 cut(s)	653
PspN4I	GGNNCC	4 cut(s)	79, 540, 651, 711
PspPI	GGNCC	2 cut(s)	415, 548
PspPPI	RGGWCCY	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	3 cut(s)	169, 369, 709
PsyI	GACNNNGTC	1 cut(s)	684
PvuII	CAGCTG	2 cut(s)	26, 95
RsaI	GTAC	3 cut(s)	457, 556, 599
RsaNI	GTAC	3 cut(s)	456, 555, 598
SacI	GAGCTC	2 cut(s)	304, 578
SalI	GTCGAC	1 cut(s)	669
SaqAI	TTAA	1 cut(s)	284
Sau3AI	GATC	5 cut(s)	60, 169, 331, 369, 709
Sau96I	GGNCC	2 cut(s)	415, 548
ScaI	AGTACT	1 cut(s)	556
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	1 cut(s)	655
SduI	GDGCHC	3 cut(s)	47, 304, 578
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	617
SfoI	GGCGCC	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	2 cut(s)	415, 548
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	133, 226, 309, 385
SsiI	CCGC	5 cut(s)	198, 380, 527, 644, 691
SspDI	GGCGCC	1 cut(s)	538
SspMI	CTAG	2 cut(s)	278, 374
SstI	GAGCTC	2 cut(s)	304, 578
StyD4I	CCNGG	1 cut(s)	653
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	5 cut(s)	147, 230, 253, 304, 670
TasI	AATT	4 cut(s)	133, 226, 309, 385
TatI	WGTACW	1 cut(s)	554
TauI	GCSGC	3 cut(s)	201, 383, 529
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseI	GCWGC	7 cut(s)	92, 95, 362, 377, 566, 619, 719
TspGWI	ACGGA	3 cut(s)	53, 443, 465
Tth111I	GACNNNGTC	1 cut(s)	684
VpaK11BI	GGWCC	2 cut(s)	415, 548
XapI	RAATTY	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	670
XspI	CTAG	2 cut(s)	278, 374
ZrmI	AGTACT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.