Rmu_sc0004989.1_g000009
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004989.1
OG0018803
Physical Location & Seq
Reverse (-)
50218 .. 51433
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004989.1_g000009.1.cds

Sequence Viewer

Length: 831 bp
atgtgtagcttggagcgccactctgccttgttcttcaacttgaagtatttcgaggattgcttcattggtggaaaccttgacgaagctgatgattacctcagcggtttcacctccgtcgatgacaattctttctcgactcttctcttttttgagattagatggcacaagttcatactagcactggatctaaagcaacgtcagagagcgagaagaatactcagagaagaactccaaacatttcagcgcttcgactgttgtctcaaagctaatatgtccgagctcttacgcttggataatttcagagatgggctaggtgaagaatacgaggaccttggagttgcaaggttgaatgcaatggaggaagttaggaacaacctggaggccaatccattgttgaaaaacaagattgtgtaccctcctgctgggaatttcggggtttcggaccatgtgcatccggctacaccattcccgggtctggcattaattccgtcaactctgacagcaggtccaagtgaagctaatcagactccagcaccgggcaaacactccaccaccttatcctcttgtctattttcgaacttgcagttacctgtcactattcagcctcgccccactccgccggcggcgtcgctgcagctatcaggaatgagacgtgaacgtgagaaggaggaggaggagcgtagaaagcgctctcgacactgtttggacctcgttcctgtcaatttgcatcctgggcttgaggcgaacgctgaggggcttgaggctcctaagcagaacaaccccaaaatggattctcgtactgctccatctgctacccagacccctcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

276

Amino Acids

31.09

Weight (kDa)

5.94

Isoelectric Point (pI)

61.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28640
rosa_laevigata RLG00000011601
rosa_multiflora Rmu_sc0004989.1_g000009
rosa_roxburghii Rroxscaffold_7G00170530
rosa_rugosa Rorug06G0271800
rosa_samantha Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 494
AciI CCGC 3 cut(s) 102, 617, 623
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 626
AfaI GTAC 2 cut(s) 413, 799
AfeI AGCGCT 2 cut(s) 245, 689
AfiI CCNNNNNNNGG 5 cut(s) 422, 470, 475, 536, 787
AgsI TTSAA 4 cut(s) 37, 43, 349, 397
AhdI GACNNNNNGTC 1 cut(s) 504
AjiI CACGTC 1 cut(s) 653
AjnI CCWGG 2 cut(s) 375, 730
AluBI AGCT 6 cut(s) 9, 86, 266, 280, 518, 637
AluI AGCT 6 cut(s) 9, 86, 266, 280, 518, 637
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 263, 643
AlwI GGATC 1 cut(s) 192
Ama87I CYCGRG 1 cut(s) 469
Aor51HI AGCGCT 2 cut(s) 245, 689
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 631, 634
ApoI RAATTY 1 cut(s) 427
AseI ATTAAT 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 3 cut(s) 18, 246, 690
AspS9I GGNCC 4 cut(s) 328, 442, 506, 706
AsuC2I CCSGG 3 cut(s) 470, 471, 537
AsuHPI GGTGA 2 cut(s) 100, 326
AsuII TTCGAA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 4 cut(s) 328, 442, 506, 706
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 282
BbvCI CCTCAGC 2 cut(s) 98, 750
BbvI GCAGC 2 cut(s) 618, 646
BccI CCATC 3 cut(s) 153, 299, 814
BciT130I CCWGG 2 cut(s) 377, 732
BcnI CCSGG 3 cut(s) 470, 471, 537
BcoDI GTCTC 2 cut(s) 263, 643
BfaI CTAG 2 cut(s) 176, 311
BfmI CTRYAG 1 cut(s) 632
BfoI RGCGCY 3 cut(s) 19, 247, 691
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 3 cut(s) 624, 632, 635
BlsI GCNGC 3 cut(s) 625, 633, 636
Bme1390I CCNGG 5 cut(s) 377, 470, 471, 537, 732
Bme18I GGWCC 4 cut(s) 328, 442, 506, 706
BmeRI GACNNNNNGTC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 653
BmgT120I GGNCC 4 cut(s) 328, 442, 506, 706
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 5 cut(s) 377, 470, 471, 537, 732
BmsI GCATC 2 cut(s) 460, 736
BoxI GACNNNNGTC 1 cut(s) 255
BplI GAGNNNNNCTC 3 cut(s) 37, 213, 245
BpmI CTGGAG 2 cut(s) 398, 513
Bpu10I CCTNAGC 3 cut(s) 98, 750, 768
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 758, 779
BpuMI CCSGG 3 cut(s) 470, 471, 537
BsaHI GRCGYC 1 cut(s) 626
BsaJI CCNNGG 3 cut(s) 331, 469, 731
Bsc4I CCNNNNNNNGG 5 cut(s) 422, 470, 475, 536, 787
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 377, 732
BseDI CCNNGG 3 cut(s) 331, 469, 731
BseGI GGATG 2 cut(s) 451, 727
BseLI CCNNNNNNNGG 5 cut(s) 422, 470, 475, 536, 787
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 112, 232, 741
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 683, 686, 689
BseXI GCAGC 2 cut(s) 618, 646
BseYI CCCAGC 1 cut(s) 422
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 4 cut(s) 455, 470, 536, 620
BslI CCNNNNNNNGG 5 cut(s) 422, 470, 475, 536, 787
BsmAI GTCTC 2 cut(s) 263, 643
BsmBI CGTCTC 1 cut(s) 643
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 3 cut(s) 102, 617, 623
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 111, 231, 742
BspLI GGNNCC 1 cut(s) 765
BspMAI CTGCAG 1 cut(s) 636
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 619
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 3 cut(s) 331, 469, 731
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 626
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 377, 732
Bst4CI ACNGT 2 cut(s) 254, 701
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 626
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 4 cut(s) 98, 218, 750, 768
BstF5I GGATG 2 cut(s) 451, 727
BstH2I RGCGCY 3 cut(s) 19, 247, 691
BstHHI GCGC 3 cut(s) 18, 246, 690
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 2 cut(s) 263, 643
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 4 cut(s) 15, 685, 733, 809
BstNI CCWGG 2 cut(s) 377, 732
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 5 cut(s) 375, 468, 469, 535, 730
BstSFI CTRYAG 1 cut(s) 632
BstV1I GCAGC 2 cut(s) 618, 646
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 383
BtrI CACGTC 1 cut(s) 653
BtsCI GGATG 2 cut(s) 451, 727
BtsIMutI CAGTG 2 cut(s) 179, 697
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 621
CfoI GCGC 3 cut(s) 18, 246, 690
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 4 cut(s) 328, 442, 506, 706
Cfr9I CCCGGG 1 cut(s) 469
CseI GACGC 1 cut(s) 615
Csp6I GTAC 2 cut(s) 412, 798
CviAII CATG 1 cut(s) 446
CviQI GTAC 2 cut(s) 412, 798
DdeI CTNAG 4 cut(s) 98, 218, 750, 768
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DriI GACNNNNNGTC 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 4 cut(s) 328, 442, 506, 706
Eco47III AGCGCT 2 cut(s) 245, 689
Eco53kI GAGCTC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 375, 730
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 643
FaeI CATG 1 cut(s) 449
FaiI YATR 3 cut(s) 173, 272, 447
FatI CATG 1 cut(s) 445
Fnu4HI GCNGC 3 cut(s) 624, 632, 635
FokI GGATG 2 cut(s) 438, 714
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 3 cut(s) 624, 632, 635
FspBI CTAG 2 cut(s) 176, 311
GlaI GCGC 3 cut(s) 17, 245, 689
GluI GCNGC 3 cut(s) 624, 632, 635
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 2 cut(s) 398, 513
HaeII RGCGCY 3 cut(s) 19, 247, 691
HaeIII GGCC 1 cut(s) 383
HapII CCGG 4 cut(s) 455, 470, 536, 620
HgaI GACGC 1 cut(s) 615
HhaI GCGC 3 cut(s) 18, 246, 690
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 3 cut(s) 16, 244, 688
HinP1I GCGC 3 cut(s) 16, 244, 688
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 136, 526, 791
HpaII CCGG 4 cut(s) 455, 470, 536, 620
HphI GGTGA 2 cut(s) 100, 326
Hpy166II GTNNAC 3 cut(s) 412, 492, 656
Hpy188I TCNGA 7 cut(s) 201, 221, 277, 302, 442, 498, 525
Hpy188III TCNNGA 3 cut(s) 133, 642, 693
Hpy8I GTNNAC 3 cut(s) 412, 492, 656
Hpy99I CGWCG 2 cut(s) 119, 631
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 2 cut(s) 254, 701
HpyCH4IV ACGT 3 cut(s) 196, 652, 658
HpyCH4V TGCA 6 cut(s) 341, 353, 451, 583, 634, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 685, 733, 809
HpyF3I CTNAG 4 cut(s) 98, 218, 750, 768
HpySE526I ACGT 3 cut(s) 196, 652, 658
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 3 cut(s) 16, 244, 688
KroI GCCGGC 1 cut(s) 619
KroNI GCCGGC 1 cut(s) 621
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 4 cut(s) 13, 676, 769, 808
Lsp1109I GCAGC 2 cut(s) 618, 646
LweI GCATC 2 cut(s) 460, 736
MaeI CTAG 2 cut(s) 176, 311
MaeII ACGT 3 cut(s) 196, 652, 658
MaeIII GTNAC 2 cut(s) 585, 592
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 5 cut(s) 25, 131, 222, 236, 329
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 5 cut(s) 124, 295, 427, 483, 721
MlyI GAGTC 2 cut(s) 130, 520
MreI CGCCGGCG 1 cut(s) 619
MroNI GCCGGC 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 4 cut(s) 455, 470, 536, 620
MspR9I CCNGG 5 cut(s) 377, 470, 471, 537, 732
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 2 cut(s) 377, 732
MwoI GCNNNNNNNGC 4 cut(s) 15, 685, 733, 809
NaeI GCCGGC 1 cut(s) 621
NciI CCSGG 3 cut(s) 470, 471, 537
NdeII GATC 1 cut(s) 184
NgoMIV GCCGGC 1 cut(s) 619
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 765
NmuCI GTSAC 1 cut(s) 592
NspV TTCGAA 1 cut(s) 575
PctI GAATGC 1 cut(s) 355
PdiI GCCGGC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 791
PkrI GCNGC 3 cut(s) 625, 633, 636
PleI GAGTC 2 cut(s) 130, 520
PpsI GAGTC 2 cut(s) 130, 520
PpuMI RGGWCCY 1 cut(s) 328
PshAI GACNNNNGTC 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 375, 730
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 375, 730
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 4 cut(s) 328, 442, 506, 706
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 1 cut(s) 636
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 413, 799
RsaNI GTAC 2 cut(s) 412, 798
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 3 cut(s) 624, 632, 635
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 4 cut(s) 328, 442, 506, 706
SchI GAGTC 2 cut(s) 130, 520
ScrFI CCNGG 5 cut(s) 377, 470, 471, 537, 732
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 2 cut(s) 460, 736
SfcI CTRYAG 1 cut(s) 632
SfuI TTCGAA 1 cut(s) 575
SgrAI CRCCGGYG 1 cut(s) 619
SinI GGWCC 4 cut(s) 328, 442, 506, 706
SmaI CCCGGG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 737, 758
SmoI CTYRAG 2 cut(s) 737, 758
Sse9I AATT 5 cut(s) 124, 295, 427, 483, 721
SsiI CCGC 3 cut(s) 102, 617, 623
SspMI CTAG 2 cut(s) 176, 311
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 5 cut(s) 375, 468, 469, 535, 730
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 254, 701
TaiI ACGT 3 cut(s) 199, 655, 661
TaqI TCGA 6 cut(s) 51, 117, 134, 249, 575, 694
TasI AATT 5 cut(s) 124, 295, 427, 483, 721
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 2 cut(s) 186, 704
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 631, 634
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 52, 160
TspGWI ACGGA 2 cut(s) 103, 477
TspMI CCCGGG 1 cut(s) 469
TspRI CASTG 2 cut(s) 186, 704
VpaK11BI GGWCC 4 cut(s) 328, 442, 506, 706
VspI ATTAAT 1 cut(s) 482
XapI RAATTY 1 cut(s) 427
XmaI CCCGGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 176, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.