Rh6AG383100
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018803
Physical Location & Seq
Reverse (-)
58233592 .. 58234806
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG383100.1

Sequence Viewer

Length: 783 bp
ATGTGTAGCTTGGAGCGCCACTCTGCCTTGTTCTTCAACTTGAAGTATTTCGAGGATTGCTTCATTGGTGGAAACCTTGACGAAGCTGATGATTACCTCAGCGGTTTCACCTCCGTCGATGACAATTCTTTCTCGACTCTTCTCTTTTTTGAGATTAGATGGCACAAGTTCATACTAGCACTGGATTTAAAGCAACGTCAGAGAGCGAGAAGAATACTCAGAGAAGAACTCCAAACATTTCAGCGCTTCGACTGTTGTCTCAAAGCTAATATGTCCGAGCTCTTACGCTTGGATAATTTCAGAGATGGGCTAGGTGAAGAATACGAGGACCTTGGAGTTGCAAGGTTGAATGCAATGGAGGAAGTTAGGAACAACCTGGAGGCCAATCCATTGTTGAAAAACAAGATTGTGTACCCTCCTGCTGGGAATTTCGGGGTTTCGGACCATGTGCATCCGGCTACACCATTCCCGGGTCTGGCATTAATTCCGTCAACTCTGACAGCAGGTCCAAGTGAAGCTAATCAGACTCCAGCACCGTTACCTGTCACTATTCAGCCTCGCCCCACTCCGCCGGCGGCGTCGCTGCAGCTATCAGGAATGAGACGTGAACGTGAGAAGGAGGAGGAGGAGCGTAGAAAGCGCTCTCGACACTGTTTGGACCTCGTTCCTGTCAATTTGCATCCTGGGCTTGAGGCGAACGCTGAGGGGCTTGAGGCTCCTAAGCAGAACAACCCCAAAATGGATTCTCGTACTGCTCCATCTGCTACCCAGACCCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

260

Amino Acids

29.38

Weight (kDa)

5.71

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 13 - 136 5e-31 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28640
rosa_laevigata RLG00000011601
rosa_multiflora Rmu_sc0004989.1_g000009
rosa_roxburghii Rroxscaffold_7G00170530
rosa_rugosa Rorug06G0271800
rosa_samantha Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 494
AciI CCGC 3 cut(s) 102, 569, 575
AcsI RAATTY 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 2 cut(s) 413, 751
AfeI AGCGCT 2 cut(s) 245, 641
AfiI CCNNNNNNNGG 4 cut(s) 422, 470, 475, 739
AgsI TTSAA 4 cut(s) 37, 43, 349, 397
AhdI GACNNNNNGTC 1 cut(s) 504
AjiI CACGTC 1 cut(s) 605
AjnI CCWGG 2 cut(s) 375, 682
AluBI AGCT 6 cut(s) 9, 86, 266, 280, 518, 589
AluI AGCT 6 cut(s) 9, 86, 266, 280, 518, 589
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 263, 595
Ama87I CYCGRG 1 cut(s) 469
Aor51HI AGCGCT 2 cut(s) 245, 641
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 583, 586
ApoI RAATTY 1 cut(s) 427
AseI ATTAAT 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 3 cut(s) 18, 246, 642
AspS9I GGNCC 4 cut(s) 328, 442, 506, 658
AsuC2I CCSGG 2 cut(s) 470, 471
AsuHPI GGTGA 2 cut(s) 100, 326
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 4 cut(s) 328, 442, 506, 658
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 282
BbvCI CCTCAGC 2 cut(s) 98, 702
BbvI GCAGC 2 cut(s) 570, 598
BccI CCATC 3 cut(s) 153, 299, 766
BciT130I CCWGG 2 cut(s) 377, 684
BcnI CCSGG 2 cut(s) 470, 471
BcoDI GTCTC 2 cut(s) 263, 595
BfaI CTAG 2 cut(s) 176, 311
BfmI CTRYAG 1 cut(s) 584
BfoI RGCGCY 3 cut(s) 19, 247, 643
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 3 cut(s) 576, 584, 587
BlsI GCNGC 3 cut(s) 577, 585, 588
Bme1390I CCNGG 4 cut(s) 377, 470, 471, 684
Bme18I GGWCC 4 cut(s) 328, 442, 506, 658
BmeRI GACNNNNNGTC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 605
BmgT120I GGNCC 4 cut(s) 328, 442, 506, 658
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 4 cut(s) 377, 470, 471, 684
BmsI GCATC 2 cut(s) 460, 688
BoxI GACNNNNGTC 1 cut(s) 255
BplI GAGNNNNNCTC 3 cut(s) 37, 213, 245
BpmI CTGGAG 2 cut(s) 398, 513
Bpu10I CCTNAGC 3 cut(s) 98, 702, 720
BpuEI CTTGAG 2 cut(s) 710, 731
BpuMI CCSGG 2 cut(s) 470, 471
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 331, 469, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 422, 470, 475, 739
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 377, 684
BseDI CCNNGG 3 cut(s) 331, 469, 683
BseGI GGATG 2 cut(s) 451, 679
BseLI CCNNNNNNNGG 4 cut(s) 422, 470, 475, 739
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 112, 232, 693
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 635, 638, 641
BseXI GCAGC 2 cut(s) 570, 598
BseYI CCCAGC 1 cut(s) 422
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 3 cut(s) 455, 470, 572
BslI CCNNNNNNNGG 4 cut(s) 422, 470, 475, 739
BsmAI GTCTC 2 cut(s) 263, 595
BsmBI CGTCTC 1 cut(s) 595
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 282
BspACI CCGC 3 cut(s) 102, 569, 575
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 111, 231, 694
BspLI GGNNCC 1 cut(s) 717
BspMAI CTGCAG 1 cut(s) 588
BspMI ACCTGC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 3 cut(s) 331, 469, 683
BssNI GRCGYC 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 377, 684
Bst4CI ACNGT 3 cut(s) 254, 537, 653
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 4 cut(s) 98, 218, 702, 720
BstF5I GGATG 2 cut(s) 451, 679
BstH2I RGCGCY 3 cut(s) 19, 247, 643
BstHHI GCGC 3 cut(s) 18, 246, 642
BstMAI GTCTC 2 cut(s) 263, 595
BstMWI GCNNNNNNNGC 4 cut(s) 15, 637, 685, 761
BstNI CCWGG 2 cut(s) 377, 684
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 4 cut(s) 375, 468, 469, 682
BstSFI CTRYAG 1 cut(s) 584
BstV1I GCAGC 2 cut(s) 570, 598
BsuRI GGCC 1 cut(s) 383
BtrI CACGTC 1 cut(s) 605
BtsCI GGATG 2 cut(s) 451, 679
BtsIMutI CAGTG 2 cut(s) 179, 649
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 573
CfoI GCGC 3 cut(s) 18, 246, 642
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 4 cut(s) 328, 442, 506, 658
Cfr9I CCCGGG 1 cut(s) 469
CseI GACGC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 412, 750
CviAII CATG 1 cut(s) 446
CviQI GTAC 2 cut(s) 412, 750
DdeI CTNAG 4 cut(s) 98, 218, 702, 720
DraI TTTAAA 1 cut(s) 189
DriI GACNNNNNGTC 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 558
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 4 cut(s) 328, 442, 506, 658
Eco47III AGCGCT 2 cut(s) 245, 641
Eco53kI GAGCTC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 375, 682
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 595
FaeI CATG 1 cut(s) 449
FaiI YATR 3 cut(s) 173, 272, 447
FatI CATG 1 cut(s) 445
Fnu4HI GCNGC 3 cut(s) 576, 584, 587
FokI GGATG 2 cut(s) 438, 666
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 3 cut(s) 576, 584, 587
FspBI CTAG 2 cut(s) 176, 311
GlaI GCGC 3 cut(s) 17, 245, 641
GluI GCNGC 3 cut(s) 576, 584, 587
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 2 cut(s) 398, 513
HaeII RGCGCY 3 cut(s) 19, 247, 643
HaeIII GGCC 1 cut(s) 383
HapII CCGG 3 cut(s) 455, 470, 572
HgaI GACGC 1 cut(s) 567
HhaI GCGC 3 cut(s) 18, 246, 642
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 3 cut(s) 16, 244, 640
HinP1I GCGC 3 cut(s) 16, 244, 640
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 136, 526, 743
HpaII CCGG 3 cut(s) 455, 470, 572
HphI GGTGA 2 cut(s) 100, 326
Hpy166II GTNNAC 3 cut(s) 412, 492, 608
Hpy188I TCNGA 7 cut(s) 201, 221, 277, 302, 442, 498, 525
Hpy188III TCNNGA 3 cut(s) 133, 594, 645
Hpy8I GTNNAC 3 cut(s) 412, 492, 608
Hpy99I CGWCG 2 cut(s) 119, 583
HpyAV CCTTC 1 cut(s) 610
HpyCH4III ACNGT 3 cut(s) 254, 537, 653
HpyCH4IV ACGT 3 cut(s) 196, 604, 610
HpyCH4V TGCA 5 cut(s) 341, 353, 451, 586, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 637, 685, 761
HpyF3I CTNAG 4 cut(s) 98, 218, 702, 720
HpySE526I ACGT 3 cut(s) 196, 604, 610
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 3 cut(s) 16, 244, 640
KroI GCCGGC 1 cut(s) 571
KroNI GCCGGC 1 cut(s) 573
LmnI GCTCC 4 cut(s) 13, 628, 721, 760
Lsp1109I GCAGC 2 cut(s) 570, 598
LweI GCATC 2 cut(s) 460, 688
MaeI CTAG 2 cut(s) 176, 311
MaeII ACGT 3 cut(s) 196, 604, 610
MaeIII GTNAC 2 cut(s) 537, 544
MboII GAAGA 5 cut(s) 25, 131, 222, 236, 329
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 5 cut(s) 124, 295, 427, 483, 673
MlyI GAGTC 2 cut(s) 130, 520
MreI CGCCGGCG 1 cut(s) 571
MroNI GCCGGC 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 188, 482
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 3 cut(s) 455, 470, 572
MspR9I CCNGG 4 cut(s) 377, 470, 471, 684
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 2 cut(s) 377, 684
MwoI GCNNNNNNNGC 4 cut(s) 15, 637, 685, 761
NaeI GCCGGC 1 cut(s) 573
NciI CCSGG 2 cut(s) 470, 471
NgoMIV GCCGGC 1 cut(s) 571
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 717
NmuCI GTSAC 1 cut(s) 544
PctI GAATGC 1 cut(s) 355
PdiI GCCGGC 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 743
PkrI GCNGC 3 cut(s) 577, 585, 588
PleI GAGTC 2 cut(s) 130, 520
PpsI GAGTC 2 cut(s) 130, 520
PpuMI RGGWCCY 1 cut(s) 328
PshAI GACNNNNGTC 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 375, 682
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 375, 682
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 4 cut(s) 328, 442, 506, 658
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 1 cut(s) 588
RsaI GTAC 2 cut(s) 413, 751
RsaNI GTAC 2 cut(s) 412, 750
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 188, 482
SatI GCNGC 3 cut(s) 576, 584, 587
Sau96I GGNCC 4 cut(s) 328, 442, 506, 658
SchI GAGTC 2 cut(s) 130, 520
ScrFI CCNGG 4 cut(s) 377, 470, 471, 684
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 2 cut(s) 460, 688
SfcI CTRYAG 1 cut(s) 584
SgrAI CRCCGGYG 1 cut(s) 571
SinI GGWCC 4 cut(s) 328, 442, 506, 658
SmaI CCCGGG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 689, 710
SmoI CTYRAG 2 cut(s) 689, 710
Sse9I AATT 5 cut(s) 124, 295, 427, 483, 673
SsiI CCGC 3 cut(s) 102, 569, 575
SspMI CTAG 2 cut(s) 176, 311
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 375, 468, 469, 682
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 3 cut(s) 254, 537, 653
TaiI ACGT 3 cut(s) 199, 607, 613
TaqI TCGA 5 cut(s) 51, 117, 134, 249, 646
TasI AATT 5 cut(s) 124, 295, 427, 483, 673
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 2 cut(s) 188, 482
Tru9I TTAA 2 cut(s) 188, 482
TscAI CASTG 2 cut(s) 186, 656
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 2 cut(s) 583, 586
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 2 cut(s) 52, 160
TspGWI ACGGA 2 cut(s) 103, 477
TspMI CCCGGG 1 cut(s) 469
TspRI CASTG 2 cut(s) 186, 656
VpaK11BI GGWCC 4 cut(s) 328, 442, 506, 658
VspI ATTAAT 1 cut(s) 482
XapI RAATTY 1 cut(s) 427
XmaI CCCGGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 176, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.