Rroxscaffold_7G00170530
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018803
Physical Location & Seq
Forward (+)
10969907 .. 10970876
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170530.1

Sequence Viewer

Length: 690 bp
ATGTCCAGAAAGCAACGTCAGAGAGCGAGAAGAGTACTCAGAGAAGAACTCCAAACATTTCAGCGCTTCGACTGTCGTCTCAAAGCTAATATGTCCGAGCTCTTACGCTTGGATAATTTCAGAGACGGGCTAGGTGAAGAATACGAGGACCTTGGAGTTGCAAGGTTGAATGCAATGGAGGAAGTTAGGAACAACCTGGAGGCCAATCCATTGTTGAAAAACAAGATTGTGTACCCTCCTGCTGGGAATTTCGGGGTTTCGGATCCTGTGCATCCGGCTTCACCATTCCCGGGTCTGGCATTAATTCCGTCAACTCCGACAGCAGGTCCAATTGAAGCTAATGATCAGACTCCAGCACCGGTAGTTTCTTCCTCGTGTCGCACTTCATGGACCAATGAAGCTGGATTTTTGTCCGTGCTTTCGGGGACTAATTTACCTGTCACTATTCAGCCTCTCCCCACTCCGCCGGCGGCGTCGCTGCAGCTATCAGGAATGAGACGTGAACGTCAGGAGAAGGAGGAGGAGGAGGAGGAGGAGCGTAGAAAGCGCTATCGACACTGTTTGGACCTCGTTCCTGTCAATTTGCATCCTGGGCTTGAGGCTAACGCGGAGGGGCATGAGGCTCCTAAGCAGAACAAACCCAAAATGGATTCTCGTACTGCTCCATCTGCTACCCAGACCCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

229

Amino Acids

25.58

Weight (kDa)

6.55

Isoelectric Point (pI)

71.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 2 - 76 1.3e-09 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28640
rosa_laevigata RLG00000011601
rosa_multiflora Rmu_sc0004989.1_g000009
rosa_roxburghii Rroxscaffold_7G00170530
rosa_rugosa Rorug06G0271800
rosa_samantha Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 314
AccII CGCG 1 cut(s) 608
AciI CCGC 3 cut(s) 464, 470, 608
AclWI GGATC 2 cut(s) 257, 270
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 3 cut(s) 36, 233, 658
AfeI AGCGCT 2 cut(s) 65, 548
AfiI CCNNNNNNNGG 4 cut(s) 242, 290, 295, 323
AgeI ACCGGT 1 cut(s) 358
AgsI TTSAA 3 cut(s) 169, 217, 335
AhdI GACNNNNNGTC 1 cut(s) 324
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 2 cut(s) 195, 589
AluBI AGCT 5 cut(s) 86, 100, 338, 401, 484
AluI AGCT 5 cut(s) 86, 100, 338, 401, 484
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 3 cut(s) 83, 117, 490
AlwI GGATC 2 cut(s) 257, 270
Ama87I CYCGRG 1 cut(s) 289
Aor51HI AGCGCT 2 cut(s) 65, 548
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 478, 481
ApoI RAATTY 1 cut(s) 247
AseI ATTAAT 1 cut(s) 302
AsiGI ACCGGT 1 cut(s) 358
AspLEI GCGC 2 cut(s) 66, 549
AspS9I GGNCC 4 cut(s) 148, 326, 390, 565
AsuC2I CCSGG 2 cut(s) 290, 291
AsuHPI GGTGA 2 cut(s) 146, 273
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 4 cut(s) 148, 326, 390, 565
BamHI GGATCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 465, 493
BccI CCATC 1 cut(s) 673
BciT130I CCWGG 2 cut(s) 197, 591
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 2 cut(s) 290, 291
BcoDI GTCTC 3 cut(s) 83, 117, 490
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 479
BfoI RGCGCY 2 cut(s) 67, 550
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 3 cut(s) 471, 479, 482
BlsI GCNGC 3 cut(s) 472, 480, 483
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 4 cut(s) 197, 290, 291, 591
Bme18I GGWCC 4 cut(s) 148, 326, 390, 565
BmeRI GACNNNNNGTC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 4 cut(s) 148, 326, 390, 565
BmiI GGNNCC 2 cut(s) 264, 624
BmrFI CCNGG 4 cut(s) 197, 290, 291, 591
BmsI GCATC 2 cut(s) 280, 595
BoxI GACNNNNGTC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpmI CTGGAG 2 cut(s) 218, 336
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 617
BpuMI CCSGG 2 cut(s) 290, 291
BsaHI GRCGYC 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 151, 289, 590
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 290, 295, 323
Bse118I RCCGGY 2 cut(s) 358, 466
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 197, 591
BseDI CCNNGG 3 cut(s) 151, 289, 590
BseGI GGATG 2 cut(s) 271, 586
BseLI CCNNNNNNNGG 4 cut(s) 242, 290, 295, 323
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 52
BseRI GAGGAG 6 cut(s) 533, 536, 539, 542, 545, 548
BseXI GCAGC 2 cut(s) 465, 493
BseYI CCCAGC 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 608
BshFI GGCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 4 cut(s) 275, 290, 359, 467
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 4 cut(s) 242, 290, 295, 323
BsmAI GTCTC 3 cut(s) 83, 117, 490
BsmBI CGTCTC 3 cut(s) 83, 117, 490
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 262, 343
BspACI CCGC 3 cut(s) 464, 470, 608
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 608
BspLI GGNNCC 2 cut(s) 264, 624
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 257, 270
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 358, 466
BssAI RCCGGY 2 cut(s) 358, 466
BssECI CCNNGG 3 cut(s) 151, 289, 590
BssMI GATC 2 cut(s) 262, 343
BssNI GRCGYC 1 cut(s) 473
BssSI CACGAG 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 2 cut(s) 197, 591
Bst4CI ACNGT 2 cut(s) 74, 560
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 2 cut(s) 38, 627
BstF5I GGATG 2 cut(s) 271, 586
BstFNI CGCG 1 cut(s) 608
BstH2I RGCGCY 2 cut(s) 67, 550
BstHHI GCGC 2 cut(s) 66, 549
BstKTI GATC 2 cut(s) 265, 346
BstMAI GTCTC 3 cut(s) 83, 117, 490
BstMBI GATC 2 cut(s) 262, 343
BstMWI GCNNNNNNNGC 3 cut(s) 544, 592, 668
BstNI CCWGG 2 cut(s) 197, 591
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 4 cut(s) 195, 288, 289, 589
BstSFI CTRYAG 1 cut(s) 479
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 2 cut(s) 465, 493
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 203
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 2 cut(s) 271, 586
BtsIMutI CAGTG 1 cut(s) 556
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 468
CfoI GCGC 2 cut(s) 66, 549
Cfr10I RCCGGY 2 cut(s) 358, 466
Cfr13I GGNCC 4 cut(s) 148, 326, 390, 565
Cfr9I CCCGGG 1 cut(s) 289
CseI GACGC 1 cut(s) 462
Csp6I GTAC 3 cut(s) 35, 232, 657
CspAI ACCGGT 1 cut(s) 358
CviAII CATG 2 cut(s) 387, 617
CviQI GTAC 3 cut(s) 35, 232, 657
DdeI CTNAG 2 cut(s) 38, 627
DpnI GATC 2 cut(s) 264, 345
DpnII GATC 2 cut(s) 262, 343
DrdI GACNNNNNNGTC 1 cut(s) 504
DriI GACNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 25
Eam1105I GACNNNNNGTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 453
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 4 cut(s) 148, 326, 390, 565
Eco47III AGCGCT 2 cut(s) 65, 548
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 195, 589
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 3 cut(s) 83, 117, 490
FaeI CATG 2 cut(s) 390, 620
FaiI YATR 3 cut(s) 92, 388, 618
FaqI GGGAC 1 cut(s) 439
FatI CATG 2 cut(s) 386, 616
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 471, 479, 482
FokI GGATG 2 cut(s) 258, 573
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 471, 479, 482
FspBI CTAG 1 cut(s) 131
GlaI GCGC 2 cut(s) 65, 548
GluI GCNGC 3 cut(s) 471, 479, 482
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 2 cut(s) 218, 336
HaeII RGCGCY 2 cut(s) 67, 550
HaeIII GGCC 1 cut(s) 203
HapII CCGG 4 cut(s) 275, 290, 359, 467
HgaI GACGC 1 cut(s) 462
HhaI GCGC 2 cut(s) 66, 549
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 2 cut(s) 390, 620
Hin6I GCGC 2 cut(s) 64, 547
HinP1I GCGC 2 cut(s) 64, 547
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 349, 650
HpaII CCGG 4 cut(s) 275, 290, 359, 467
HphI GGTGA 2 cut(s) 146, 273
Hpy166II GTNNAC 3 cut(s) 232, 312, 503
Hpy188I TCNGA 7 cut(s) 21, 41, 97, 122, 262, 318, 348
Hpy188III TCNNGA 3 cut(s) 6, 489, 509
Hpy8I GTNNAC 3 cut(s) 232, 312, 503
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 2 cut(s) 74, 560
HpyCH4IV ACGT 3 cut(s) 16, 499, 505
HpyCH4V TGCA 5 cut(s) 161, 173, 271, 481, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 544, 592, 668
HpyF3I CTNAG 2 cut(s) 38, 627
HpySE526I ACGT 3 cut(s) 16, 499, 505
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 2 cut(s) 390, 620
HspAI GCGC 2 cut(s) 64, 547
KroI GCCGGC 1 cut(s) 466
KroNI GCCGGC 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 262, 343
LmnI GCTCC 3 cut(s) 535, 628, 667
Lsp1109I GCAGC 2 cut(s) 465, 493
LweI GCATC 2 cut(s) 280, 595
MaeI CTAG 1 cut(s) 131
MaeII ACGT 3 cut(s) 16, 499, 505
MaeIII GTNAC 1 cut(s) 439
MalI GATC 2 cut(s) 264, 345
MboI GATC 2 cut(s) 262, 343
MboII GAAGA 4 cut(s) 42, 56, 149, 360
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 6 cut(s) 115, 247, 303, 330, 430, 580
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 341
MreI CGCCGGCG 1 cut(s) 466
MroNI GCCGGC 1 cut(s) 466
MseI TTAA 1 cut(s) 302
MspI CCGG 4 cut(s) 275, 290, 359, 467
MspR9I CCNGG 4 cut(s) 197, 290, 291, 591
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 2 cut(s) 197, 591
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 3 cut(s) 544, 592, 668
NaeI GCCGGC 1 cut(s) 468
NciI CCSGG 2 cut(s) 290, 291
NdeII GATC 2 cut(s) 262, 343
NgoMIV GCCGGC 1 cut(s) 466
NlaIII CATG 2 cut(s) 390, 620
NlaIV GGNNCC 2 cut(s) 264, 624
NmuCI GTSAC 1 cut(s) 439
PctI GAATGC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 650
PinAI ACCGGT 1 cut(s) 358
PkrI GCNGC 3 cut(s) 472, 480, 483
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 75
PshBI ATTAAT 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 195, 589
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 2 cut(s) 195, 589
PspN4I GGNNCC 2 cut(s) 264, 624
PspPI GGNCC 4 cut(s) 148, 326, 390, 565
PspPPI RGGWCCY 1 cut(s) 148
PstI CTGCAG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 3 cut(s) 36, 233, 658
RsaNI GTAC 3 cut(s) 35, 232, 657
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 3 cut(s) 471, 479, 482
Sau3AI GATC 2 cut(s) 262, 343
Sau96I GGNCC 4 cut(s) 148, 326, 390, 565
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 4 cut(s) 197, 290, 291, 591
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 280, 595
SfcI CTRYAG 1 cut(s) 479
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 4 cut(s) 148, 326, 390, 565
SmaI CCCGGG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 6 cut(s) 115, 247, 303, 330, 430, 580
SsiI CCGC 3 cut(s) 464, 470, 608
SspMI CTAG 1 cut(s) 131
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 4 cut(s) 195, 288, 289, 589
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 74, 560
TaiI ACGT 3 cut(s) 19, 502, 508
TaqI TCGA 2 cut(s) 69, 553
TasI AATT 6 cut(s) 115, 247, 303, 330, 430, 580
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 563
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 478, 481
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 375, 411
TspGWI ACGGA 2 cut(s) 297, 403
TspMI CCCGGG 1 cut(s) 289
TspRI CASTG 1 cut(s) 563
VpaK11BI GGWCC 4 cut(s) 148, 326, 390, 565
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 1 cut(s) 247
XmaI CCCGGG 1 cut(s) 289
XspI CTAG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.