Rh6CG396500
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018803
Physical Location & Seq
Reverse (-)
58347105 .. 58348066
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG396500.1

Sequence Viewer

Length: 651 bp
ATGTCCAGAAAGCAACGTCAAAGAGCGAGAAGAATACTCAGAGAAGAACTCCAAACATTTCAGCGCTTTGACTGTCGTCTCAAAGCTAATATGTCCGAACTCTTACGCTTGGATAATTTCAGAGATGGGCTAGGTGAAGAATACGAGGACCTTGGAGTTGCAAGGTTGAATGCAATGGAGGAAGTTAGGAACAACCTGGAGGCCAATCCATTGTTGAAAAACAAGATTGTGTACCCTCCTGCGGGGAATTTCGGGGTTTCGGATCATGTGCATCCGGCTACACCATTCCCGGGTCTGGCATTAATTCCGTCAACTCTGACAGCAGGTCCAAGTGAAGCTAATCAGACTCCAGCACCGGGCAAACACTCCACCACCTTATCCTCTTGTCTATTTTCGAACTTGCAGTTACCTGTCACTATTCAGCCTCGCCCCACTCCGCCGGTGGCGCCGCTGCAGCTATCAGGAATGAGACGTGAACGTGAGAAGGAGGAGGAGGAGCGTAGAAAGCGCTATCGACACTGTTTGGACCTTGTTCCTGTCAATTTGCATCCTGGGCTTGAGGCGAACGCTGAGGGGCTTGAGGCTCCTAAGCAGAACAACCCCAAAATGGATTCTCGTACTGCTCCATCTGCTACCCAGACCCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

216

Amino Acids

24.27

Weight (kDa)

9.09

Isoelectric Point (pI)

68.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 2 - 76 5.9e-10 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28640
rosa_laevigata RLG00000011601
rosa_multiflora Rmu_sc0004989.1_g000009
rosa_roxburghii Rroxscaffold_7G00170530
rosa_rugosa Rorug06G0271800
rosa_samantha Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 445
AciI CCGC 3 cut(s) 242, 437, 449
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 446
AfaI GTAC 2 cut(s) 233, 619
AfeI AGCGCT 2 cut(s) 65, 509
AfiI CCNNNNNNNGG 6 cut(s) 241, 242, 290, 295, 356, 607
AgsI TTSAA 2 cut(s) 169, 217
AhdI GACNNNNNGTC 1 cut(s) 324
AjiI CACGTC 1 cut(s) 473
AjnI CCWGG 2 cut(s) 195, 550
AluBI AGCT 3 cut(s) 86, 338, 457
AluI AGCT 3 cut(s) 86, 338, 457
Alw26I GTCTC 2 cut(s) 83, 463
AlwI GGATC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 289
Aor51HI AGCGCT 2 cut(s) 65, 509
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 451, 454
ApoI RAATTY 1 cut(s) 247
AseI ATTAAT 1 cut(s) 302
AspLEI GCGC 3 cut(s) 66, 448, 510
AspS9I GGNCC 3 cut(s) 148, 326, 526
AsuC2I CCSGG 3 cut(s) 290, 291, 357
AsuHPI GGTGA 1 cut(s) 146
AsuII TTCGAA 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 3 cut(s) 148, 326, 526
BanI GGYRCC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 438, 466
BccI CCATC 2 cut(s) 119, 634
BciT130I CCWGG 2 cut(s) 197, 552
BcnI CCSGG 3 cut(s) 290, 291, 357
BcoDI GTCTC 2 cut(s) 83, 463
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 452
BfoI RGCGCY 3 cut(s) 67, 449, 511
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 3 cut(s) 449, 452, 455
BlsI GCNGC 3 cut(s) 450, 453, 456
Bme1390I CCNGG 5 cut(s) 197, 290, 291, 357, 552
Bme18I GGWCC 3 cut(s) 148, 326, 526
BmeRI GACNNNNNGTC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 473
BmgT120I GGNCC 3 cut(s) 148, 326, 526
BmiI GGNNCC 2 cut(s) 447, 585
BmrFI CCNGG 5 cut(s) 197, 290, 291, 357, 552
BmsI GCATC 2 cut(s) 280, 556
BoxI GACNNNNGTC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpmI CTGGAG 2 cut(s) 218, 333
Bpu10I CCTNAGC 2 cut(s) 570, 588
Bpu14I TTCGAA 1 cut(s) 395
BpuEI CTTGAG 2 cut(s) 578, 599
BpuMI CCSGG 3 cut(s) 290, 291, 357
BsaHI GRCGYC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 151, 289, 551
Bsc4I CCNNNNNNNGG 6 cut(s) 241, 242, 290, 295, 356, 607
Bse118I RCCGGY 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 197, 552
BseDI CCNNGG 3 cut(s) 151, 289, 551
BseGI GGATG 2 cut(s) 271, 547
BseLI CCNNNNNNNGG 6 cut(s) 241, 242, 290, 295, 356, 607
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 52, 561
BseRI GAGGAG 3 cut(s) 503, 506, 509
BseXI GCAGC 2 cut(s) 438, 466
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 4 cut(s) 275, 290, 356, 440
BslI CCNNNNNNNGG 6 cut(s) 241, 242, 290, 295, 356, 607
BsmAI GTCTC 2 cut(s) 83, 463
BsmBI CGTCTC 2 cut(s) 83, 463
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 289
Bsp119I TTCGAA 1 cut(s) 395
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 242, 437, 449
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 51, 562
BspLI GGNNCC 2 cut(s) 447, 585
BspMAI CTGCAG 1 cut(s) 456
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 270
BspT104I TTCGAA 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 151, 289, 551
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 197, 552
Bst4CI ACNGT 2 cut(s) 74, 521
BstACI GRCGYC 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 38, 570, 588
BstF5I GGATG 2 cut(s) 271, 547
BstH2I RGCGCY 3 cut(s) 67, 449, 511
BstHHI GCGC 3 cut(s) 66, 448, 510
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 83, 463
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 5 cut(s) 445, 454, 505, 553, 629
BstNI CCWGG 2 cut(s) 197, 552
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 5 cut(s) 195, 288, 289, 355, 550
BstSFI CTRYAG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 438, 466
BsuRI GGCC 1 cut(s) 203
BtrI CACGTC 1 cut(s) 473
BtsCI GGATG 2 cut(s) 271, 547
BtsIMutI CAGTG 1 cut(s) 517
BveI ACCTGC 1 cut(s) 314
CfoI GCGC 3 cut(s) 66, 448, 510
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 3 cut(s) 148, 326, 526
Cfr9I CCCGGG 1 cut(s) 289
Csp6I GTAC 2 cut(s) 232, 618
CviAII CATG 1 cut(s) 266
CviQI GTAC 2 cut(s) 232, 618
DdeI CTNAG 3 cut(s) 38, 570, 588
DinI GGCGCC 1 cut(s) 447
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DriI GACNNNNNGTC 1 cut(s) 324
Eam1105I GACNNNNNGTC 1 cut(s) 324
EciI GGCGGA 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 151
Eco47I GGWCC 3 cut(s) 148, 326, 526
Eco47III AGCGCT 2 cut(s) 65, 509
Eco88I CYCGRG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 195, 550
EcoT14I CCWWGG 1 cut(s) 151
EgeI GGCGCC 1 cut(s) 447
EheI GGCGCC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 2 cut(s) 83, 463
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 92, 267
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 449, 452, 455
FokI GGATG 2 cut(s) 258, 534
Fsp4HI GCNGC 3 cut(s) 449, 452, 455
FspBI CTAG 1 cut(s) 131
GlaI GCGC 3 cut(s) 65, 447, 509
GluI GCNGC 3 cut(s) 449, 452, 455
GsuI CTGGAG 2 cut(s) 218, 333
HaeII RGCGCY 3 cut(s) 67, 449, 511
HaeIII GGCC 1 cut(s) 203
HapII CCGG 4 cut(s) 275, 290, 356, 440
HhaI GCGC 3 cut(s) 66, 448, 510
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 3 cut(s) 64, 446, 508
HinP1I GCGC 3 cut(s) 64, 446, 508
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 346, 611
HpaII CCGG 4 cut(s) 275, 290, 356, 440
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 232, 312, 476
Hpy188I TCNGA 6 cut(s) 41, 97, 122, 262, 318, 345
Hpy188III TCNNGA 2 cut(s) 6, 462
Hpy8I GTNNAC 3 cut(s) 232, 312, 476
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 74, 521
HpyCH4IV ACGT 3 cut(s) 16, 472, 478
HpyCH4V TGCA 6 cut(s) 161, 173, 271, 403, 454, 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 445, 454, 505, 553, 629
HpyF3I CTNAG 3 cut(s) 38, 570, 588
HpySE526I ACGT 3 cut(s) 16, 472, 478
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 3 cut(s) 64, 446, 508
KasI GGCGCC 1 cut(s) 445
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 3 cut(s) 496, 589, 628
Lsp1109I GCAGC 2 cut(s) 438, 466
LweI GCATC 2 cut(s) 280, 556
MaeI CTAG 1 cut(s) 131
MaeII ACGT 3 cut(s) 16, 472, 478
MaeIII GTNAC 2 cut(s) 405, 412
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 3 cut(s) 42, 56, 149
MluCI AATT 4 cut(s) 115, 247, 303, 541
Mly113I GGCGCC 1 cut(s) 446
MlyI GAGTC 1 cut(s) 340
MseI TTAA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 4 cut(s) 275, 290, 356, 440
MspR9I CCNGG 5 cut(s) 197, 290, 291, 357, 552
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 2 cut(s) 197, 552
MwoI GCNNNNNNNGC 5 cut(s) 445, 454, 505, 553, 629
NarI GGCGCC 1 cut(s) 446
NciI CCSGG 3 cut(s) 290, 291, 357
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 2 cut(s) 447, 585
NmuCI GTSAC 1 cut(s) 412
NspV TTCGAA 1 cut(s) 395
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 3 cut(s) 450, 453, 456
PleI GAGTC 1 cut(s) 340
PluTI GGCGCC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 75
PshBI ATTAAT 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 195, 550
PspGI CCWGG 2 cut(s) 195, 550
PspN4I GGNNCC 2 cut(s) 447, 585
PspPI GGNCC 3 cut(s) 148, 326, 526
PspPPI RGGWCCY 1 cut(s) 148
PstI CTGCAG 1 cut(s) 456
RsaI GTAC 2 cut(s) 233, 619
RsaNI GTAC 2 cut(s) 232, 618
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 3 cut(s) 449, 452, 455
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 3 cut(s) 148, 326, 526
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 5 cut(s) 197, 290, 291, 357, 552
SfaNI GCATC 2 cut(s) 280, 556
SfcI CTRYAG 1 cut(s) 452
SfoI GGCGCC 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 395
SgrAI CRCCGGYG 1 cut(s) 439
SinI GGWCC 3 cut(s) 148, 326, 526
SmaI CCCGGG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 557, 578
SmoI CTYRAG 2 cut(s) 557, 578
Sse9I AATT 4 cut(s) 115, 247, 303, 541
SsiI CCGC 3 cut(s) 242, 437, 449
SspDI GGCGCC 1 cut(s) 445
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 5 cut(s) 195, 288, 289, 355, 550
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 74, 521
TaiI ACGT 3 cut(s) 19, 475, 481
TaqI TCGA 2 cut(s) 395, 514
TasI AATT 4 cut(s) 115, 247, 303, 541
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 524
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 451, 454
Tsp45I GTSAC 1 cut(s) 412
TspGWI ACGGA 1 cut(s) 297
TspMI CCCGGG 1 cut(s) 289
TspRI CASTG 1 cut(s) 524
VpaK11BI GGWCC 3 cut(s) 148, 326, 526
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmaI CCCGGG 1 cut(s) 289
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.