Rh6DG383900
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018803
Physical Location & Seq
Reverse (-)
57690196 .. 57692079
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG383900.1

Sequence Viewer

Length: 861 bp
ATGACAGAGAATCGTCACAAAAACTTCGTCAACTCAATGATCAAATATCTTGACCGTACCAATCTTGCAATAGTTGCACGAAGCTTGGAGCGCCACTCTGCCTTGTTCTTCAACTTGAAGTATTTCGAGGATTGCTTCATTGGTGGAAACCTTGACGAAGCTGATGATTACCTCAGCGGTTTCACCTCCGTCGATGACAATTCTTTCTCGACTCTTCTCTTTTTTGAGATTAGATGGCACAAGTTCATACTAGCACTGGCTTTAAAGCAACGTCAGAGAGCGAGAAGAATACTCAGAGAAGAACTCCAAACATTTCAGCGCTTCGACTGTCGTCTCAAAGCTAATATGTCCGAGCTCTTACGCTTGGATAATTTCAGAGATGGGCTAGGTGAAGAATACGAGGACCTTGGAGTTGCAAGGTTGAATGCAATGGAGGAAGTTAGGAACAACCTGGAGGCCAATCCATTGTTGAAAAACAAGATTGTGTACCCTCCTGCGGGGAATTTCGGGGTTTCGGATCATGTGCATCCGGCTACACCATTCCCGGGTCTGGCATTAATTCCGTCAACTCTGACAGCAGGTCCAAGTGAAGCTAATCAGACTCGAGCACCGTTACCTGTCACTATTCAGCCTCGCCCCACTCCGCCGGCGGCGTCGCTGCAGCTATCAGGAATGAGACGTGAACGTCAGGAGAAGGAGGAGGAGGAGCGTAGAAAGCGCTCTCGACACTGTTTGGACCTCGTTCCTGTCAATCTGCATCCTGGGCTTGAGGCGAACGCTGAGGGGCTTGAGGCTCCTAAGCAGAACAACCCCAAAATGGATTCTCGTACTGCTCCATCTGCTACCCAGACCCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

286

Amino Acids

32.56

Weight (kDa)

7.11

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 38 - 161 9.4e-31 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28640
rosa_laevigata RLG00000011601
rosa_multiflora Rmu_sc0004989.1_g000009
rosa_roxburghii Rroxscaffold_7G00170530
rosa_rugosa Rorug06G0271800
rosa_samantha Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 684
Acc36I ACCTGC 1 cut(s) 569
AciI CCGC 4 cut(s) 177, 497, 644, 650
AclWI GGATC 1 cut(s) 525
AcsI RAATTY 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 653
AfaI GTAC 3 cut(s) 58, 488, 829
AfeI AGCGCT 2 cut(s) 320, 719
AfiI CCNNNNNNNGG 5 cut(s) 496, 497, 545, 550, 817
AgsI TTSAA 4 cut(s) 112, 118, 424, 472
AhdI GACNNNNNGTC 1 cut(s) 579
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 2 cut(s) 450, 760
AluBI AGCT 6 cut(s) 84, 161, 341, 355, 593, 664
AluI AGCT 6 cut(s) 84, 161, 341, 355, 593, 664
Alw21I GWGCWC 2 cut(s) 357, 610
Alw26I GTCTC 2 cut(s) 338, 670
AlwI GGATC 1 cut(s) 525
Ama87I CYCGRG 2 cut(s) 544, 603
Aor51HI AGCGCT 2 cut(s) 320, 719
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 658, 661
ApoI RAATTY 1 cut(s) 502
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AseI ATTAAT 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 3 cut(s) 93, 321, 720
AspS9I GGNCC 3 cut(s) 403, 581, 736
AsuC2I CCSGG 2 cut(s) 545, 546
AsuHPI GGTGA 2 cut(s) 175, 401
AvaI CYCGRG 2 cut(s) 544, 603
AvaII GGWCC 3 cut(s) 403, 581, 736
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 357, 610
BbvCI CCTCAGC 2 cut(s) 173, 780
BbvI GCAGC 2 cut(s) 645, 673
BccI CCATC 3 cut(s) 228, 374, 844
BciT130I CCWGG 2 cut(s) 452, 762
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 2 cut(s) 545, 546
BcoDI GTCTC 2 cut(s) 338, 670
BfaI CTAG 2 cut(s) 251, 386
BfmI CTRYAG 1 cut(s) 659
BfoI RGCGCY 3 cut(s) 94, 322, 721
BfuAI ACCTGC 1 cut(s) 569
BisI GCNGC 3 cut(s) 651, 659, 662
BlsI GCNGC 3 cut(s) 652, 660, 663
Bme1390I CCNGG 4 cut(s) 452, 545, 546, 762
Bme18I GGWCC 3 cut(s) 403, 581, 736
BmeRI GACNNNNNGTC 1 cut(s) 579
BmeT110I CYCGRG 2 cut(s) 544, 603
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 3 cut(s) 403, 581, 736
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 4 cut(s) 452, 545, 546, 762
BmsI GCATC 2 cut(s) 535, 766
BoxI GACNNNNGTC 1 cut(s) 330
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 288, 320
BpmI CTGGAG 1 cut(s) 473
Bpu10I CCTNAGC 3 cut(s) 173, 780, 798
BpuEI CTTGAG 2 cut(s) 788, 809
BpuMI CCSGG 2 cut(s) 545, 546
BsaHI GRCGYC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 406, 544, 761
Bsc4I CCNNNNNNNGG 5 cut(s) 496, 497, 545, 550, 817
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 2 cut(s) 452, 762
BseDI CCNNGG 3 cut(s) 406, 544, 761
BseGI GGATG 2 cut(s) 526, 757
BseLI CCNNNNNNNGG 5 cut(s) 496, 497, 545, 550, 817
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 187, 307, 771
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 3 cut(s) 713, 716, 719
BseXI GCAGC 2 cut(s) 645, 673
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 357, 610
BsiHKCI CYCGRG 2 cut(s) 544, 603
BsiSI CCGG 3 cut(s) 530, 545, 647
BslI CCNNNNNNNGG 5 cut(s) 496, 497, 545, 550, 817
BsmAI GTCTC 2 cut(s) 338, 670
BsmBI CGTCTC 2 cut(s) 338, 670
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 2 cut(s) 544, 603
Bsp1286I GDGCHC 2 cut(s) 357, 610
Bsp143I GATC 2 cut(s) 39, 517
BspACI CCGC 4 cut(s) 177, 497, 644, 650
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 186, 306, 772
BspLI GGNNCC 1 cut(s) 795
BspMAI CTGCAG 1 cut(s) 663
BspMI ACCTGC 1 cut(s) 569
BspPI GGATC 1 cut(s) 525
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 3 cut(s) 406, 544, 761
BssMI GATC 2 cut(s) 39, 517
BssNI GRCGYC 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 2 cut(s) 452, 762
Bst4CI ACNGT 4 cut(s) 56, 329, 612, 731
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 653
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 4 cut(s) 173, 293, 780, 798
BstF5I GGATG 2 cut(s) 526, 757
BstH2I RGCGCY 3 cut(s) 94, 322, 721
BstHHI GCGC 3 cut(s) 93, 321, 720
BstKTI GATC 2 cut(s) 42, 520
BstMAI GTCTC 2 cut(s) 338, 670
BstMBI GATC 2 cut(s) 39, 517
BstMWI GCNNNNNNNGC 5 cut(s) 74, 90, 715, 763, 839
BstNI CCWGG 2 cut(s) 452, 762
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 4 cut(s) 450, 543, 544, 760
BstSFI CTRYAG 1 cut(s) 659
BstV1I GCAGC 2 cut(s) 645, 673
BsuRI GGCC 1 cut(s) 458
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 2 cut(s) 526, 757
BtsIMutI CAGTG 2 cut(s) 254, 727
BveI ACCTGC 1 cut(s) 569
Cac8I GCNNGC 1 cut(s) 648
CfoI GCGC 3 cut(s) 93, 321, 720
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 3 cut(s) 403, 581, 736
Cfr9I CCCGGG 1 cut(s) 544
CseI GACGC 1 cut(s) 642
Csp6I GTAC 3 cut(s) 57, 487, 828
CviAII CATG 1 cut(s) 521
CviQI GTAC 3 cut(s) 57, 487, 828
DdeI CTNAG 4 cut(s) 173, 293, 780, 798
DpnI GATC 2 cut(s) 41, 519
DpnII GATC 2 cut(s) 39, 517
DraI TTTAAA 1 cut(s) 264
DrdI GACNNNNNNGTC 1 cut(s) 684
DriI GACNNNNNGTC 1 cut(s) 579
DseDI GACNNNNNNGTC 1 cut(s) 684
Eam1104I CTCTTC 1 cut(s) 219
Eam1105I GACNNNNNGTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 633
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 3 cut(s) 403, 581, 736
Eco47III AGCGCT 2 cut(s) 320, 719
Eco53kI GAGCTC 1 cut(s) 355
Eco88I CYCGRG 2 cut(s) 544, 603
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 450, 760
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 2 cut(s) 338, 670
FaeI CATG 1 cut(s) 524
FaiI YATR 3 cut(s) 248, 347, 522
FatI CATG 1 cut(s) 520
FauI CCCGC 1 cut(s) 490
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 651, 659, 662
FokI GGATG 2 cut(s) 513, 744
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 651, 659, 662
FspBI CTAG 2 cut(s) 251, 386
GlaI GCGC 3 cut(s) 92, 320, 719
GluI GCNGC 3 cut(s) 651, 659, 662
GsuI CTGGAG 1 cut(s) 473
HaeII RGCGCY 3 cut(s) 94, 322, 721
HaeIII GGCC 1 cut(s) 458
HapII CCGG 3 cut(s) 530, 545, 647
HgaI GACGC 1 cut(s) 642
HhaI GCGC 3 cut(s) 93, 321, 720
Hin1I GRCGYC 1 cut(s) 653
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 3 cut(s) 91, 319, 718
HinP1I GCGC 3 cut(s) 91, 319, 718
HincII GTYRAC 2 cut(s) 31, 567
HindII GTYRAC 2 cut(s) 31, 567
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 4 cut(s) 10, 211, 601, 821
HpaII CCGG 3 cut(s) 530, 545, 647
HphI GGTGA 2 cut(s) 175, 401
Hpy166II GTNNAC 4 cut(s) 31, 487, 567, 683
Hpy188I TCNGA 7 cut(s) 276, 296, 352, 377, 517, 573, 600
Hpy188III TCNNGA 5 cut(s) 50, 208, 669, 689, 723
Hpy8I GTNNAC 4 cut(s) 31, 487, 567, 683
Hpy99I CGWCG 2 cut(s) 194, 658
HpyAV CCTTC 1 cut(s) 688
HpyCH4III ACNGT 4 cut(s) 56, 329, 612, 731
HpyCH4IV ACGT 3 cut(s) 271, 679, 685
HpyCH4V TGCA 7 cut(s) 68, 77, 416, 428, 526, 661, 757
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 90, 715, 763, 839
HpyF3I CTNAG 4 cut(s) 173, 293, 780, 798
HpySE526I ACGT 3 cut(s) 271, 679, 685
Hsp92I GRCGYC 1 cut(s) 653
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 3 cut(s) 91, 319, 718
KroI GCCGGC 1 cut(s) 646
KroNI GCCGGC 1 cut(s) 648
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 517
LmnI GCTCC 4 cut(s) 88, 706, 799, 838
Lsp1109I GCAGC 2 cut(s) 645, 673
LweI GCATC 2 cut(s) 535, 766
MaeI CTAG 2 cut(s) 251, 386
MaeII ACGT 3 cut(s) 271, 679, 685
MaeIII GTNAC 3 cut(s) 14, 612, 619
MalI GATC 2 cut(s) 41, 519
MboI GATC 2 cut(s) 39, 517
MboII GAAGA 5 cut(s) 100, 206, 297, 311, 404
MhlI GDGCHC 2 cut(s) 357, 610
MluCI AATT 4 cut(s) 199, 370, 502, 558
MlyI GAGTC 2 cut(s) 205, 595
MreI CGCCGGCG 1 cut(s) 646
MroNI GCCGGC 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 263, 557
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 3 cut(s) 530, 545, 647
MspR9I CCNGG 4 cut(s) 452, 545, 546, 762
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 452, 762
MwoI GCNNNNNNNGC 5 cut(s) 74, 90, 715, 763, 839
NaeI GCCGGC 1 cut(s) 648
NciI CCSGG 2 cut(s) 545, 546
NdeII GATC 2 cut(s) 39, 517
NgoMIV GCCGGC 1 cut(s) 646
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 1 cut(s) 795
NmuCI GTSAC 2 cut(s) 14, 619
PaeR7I CTCGAG 1 cut(s) 603
PctI GAATGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 10, 821
PkrI GCNGC 3 cut(s) 652, 660, 663
PleI GAGTC 2 cut(s) 205, 595
PpsI GAGTC 2 cut(s) 205, 595
PpuMI RGGWCCY 1 cut(s) 403
PshAI GACNNNNGTC 1 cut(s) 330
PshBI ATTAAT 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 450, 760
PspGI CCWGG 2 cut(s) 450, 760
PspN4I GGNNCC 1 cut(s) 795
PspPI GGNCC 3 cut(s) 403, 581, 736
PspPPI RGGWCCY 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 603
PstI CTGCAG 1 cut(s) 663
RsaI GTAC 3 cut(s) 58, 488, 829
RsaNI GTAC 3 cut(s) 57, 487, 828
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 263, 557
SatI GCNGC 3 cut(s) 651, 659, 662
Sau3AI GATC 2 cut(s) 39, 517
Sau96I GGNCC 3 cut(s) 403, 581, 736
SchI GAGTC 2 cut(s) 205, 595
ScrFI CCNGG 4 cut(s) 452, 545, 546, 762
SduI GDGCHC 2 cut(s) 357, 610
SfaNI GCATC 2 cut(s) 535, 766
SfcI CTRYAG 1 cut(s) 659
Sfr274I CTCGAG 1 cut(s) 603
SgrAI CRCCGGYG 1 cut(s) 646
SinI GGWCC 3 cut(s) 403, 581, 736
SlaI CTCGAG 1 cut(s) 603
SmaI CCCGGG 1 cut(s) 546
SmlI CTYRAG 3 cut(s) 603, 767, 788
SmoI CTYRAG 3 cut(s) 603, 767, 788
Sse9I AATT 4 cut(s) 199, 370, 502, 558
SsiI CCGC 4 cut(s) 177, 497, 644, 650
SspMI CTAG 2 cut(s) 251, 386
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 4 cut(s) 450, 543, 544, 760
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 4 cut(s) 56, 329, 612, 731
TaiI ACGT 3 cut(s) 274, 682, 688
TaqI TCGA 6 cut(s) 126, 192, 209, 324, 604, 724
TasI AATT 4 cut(s) 199, 370, 502, 558
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 2 cut(s) 10, 821
Tru1I TTAA 2 cut(s) 263, 557
Tru9I TTAA 2 cut(s) 263, 557
TscAI CASTG 2 cut(s) 261, 734
TseFI GTSAC 2 cut(s) 14, 619
TseI GCWGC 2 cut(s) 658, 661
Tsp45I GTSAC 2 cut(s) 14, 619
TspDTI ATGAA 2 cut(s) 127, 235
TspGWI ACGGA 2 cut(s) 178, 552
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 2 cut(s) 261, 734
VpaK11BI GGWCC 3 cut(s) 403, 581, 736
VspI ATTAAT 1 cut(s) 557
XapI RAATTY 1 cut(s) 502
XhoI CTCGAG 1 cut(s) 603
XmaI CCCGGG 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 2 cut(s) 251, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.