RLG00000011601
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018803
Physical Location & Seq
Forward (+)
10885924 .. 10886499
576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011601

Sequence Viewer

Length: 471 bp
ATGTCCAGAAAGCAACGTCAAAGATCGAGAAGAATACTCAGAGAAGAACTCCAAACATCTCAGCGCTTCAACTGTCGTCTCAAAGCTAATATGTCCGAGCTCTTACGCTTGGATAATTTTAGAGACGGGCTAAGTGAAGAATACGAGGACCTTGGAGTTGCAAGGTTGAATGCAATGGAGGAAGTTAGGAACAACCTCGAGGCCAATCCATTGTTGAAAAACAAGATTGTGTACCCTCCTGTGGGGAATTTTGGGGTTTCGGATCCTGTGCATCCGACTTCACCATTCTCGGGTCTGGCATTAATTCCGTCAACTCCGACAACATGTCCAATTGAAGCTAATGATCAGACTCCAGCACCGGTAGTTTCTTCCTCGTGTCGCACTTCATGGACCAATGAAGCTGGATTTTTGTCCATGCTTATGGGGACTAATGTTAATTTAGTTCATCATAGGAGGAATAATTCGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

157

Amino Acids

17.63

Weight (kDa)

8.95

Isoelectric Point (pI)

62.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 2 - 76 1.1e-08 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28640
rosa_laevigata RLG00000011601
rosa_multiflora Rmu_sc0004989.1_g000009
rosa_roxburghii Rroxscaffold_7G00170530
rosa_rugosa Rorug06G0271800
rosa_samantha Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 197
AclWI GGATC 2 cut(s) 257, 270
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 1 cut(s) 233
AfeI AGCGCT 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 241, 242, 290
AflIII ACRYGT 1 cut(s) 323
AgeI ACCGGT 1 cut(s) 358
AgsI TTSAA 4 cut(s) 70, 169, 217, 335
AhdI GACNNNNNGTC 1 cut(s) 324
AluBI AGCT 4 cut(s) 86, 100, 338, 401
AluI AGCT 4 cut(s) 86, 100, 338, 401
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 83, 117
AlwI GGATC 2 cut(s) 257, 270
Ama87I CYCGRG 2 cut(s) 197, 289
Aor51HI AGCGCT 1 cut(s) 65
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 247
AseI ATTAAT 1 cut(s) 302
AsiGI ACCGGT 1 cut(s) 358
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 148, 390
AsuHPI GGTGA 1 cut(s) 273
AvaI CYCGRG 2 cut(s) 197, 289
AvaII GGWCC 2 cut(s) 148, 390
BamHI GGATCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 102
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 83, 117
BfoI RGCGCY 1 cut(s) 67
Bme18I GGWCC 2 cut(s) 148, 390
BmeRI GACNNNNNGTC 1 cut(s) 324
BmeT110I CYCGRG 2 cut(s) 197, 289
BmgT120I GGNCC 2 cut(s) 148, 390
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpmI CTGGAG 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 242, 290
Bse118I RCCGGY 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 241, 242, 290
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 52, 74
BshFI GGCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 2 cut(s) 197, 289
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 241, 242, 290
BsmAI GTCTC 2 cut(s) 83, 117
BsmBI CGTCTC 2 cut(s) 83, 117
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 2 cut(s) 197, 289
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 23, 262, 343
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 51, 73
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 2 cut(s) 257, 270
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 23, 262, 343
BssSI CACGAG 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 38, 60, 131
BstF5I GGATG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 3 cut(s) 26, 265, 346
BstMAI GTCTC 2 cut(s) 83, 117
BstMBI GATC 3 cut(s) 23, 262, 343
BstNSI RCATGY 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 271
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 148, 390
Csp6I GTAC 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 358
CviAII CATG 3 cut(s) 324, 387, 415
CviJI RGCY 6 cut(s) 86, 100, 130, 203, 338, 401
CviKI_1 RGCY 6 cut(s) 86, 100, 130, 203, 338, 401
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 3 cut(s) 38, 60, 131
DpnI GATC 3 cut(s) 25, 264, 345
DpnII GATC 3 cut(s) 23, 262, 343
DriI GACNNNNNGTC 1 cut(s) 324
Eam1105I GACNNNNNGTC 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 148, 390
Eco47III AGCGCT 1 cut(s) 65
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 2 cut(s) 197, 289
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 2 cut(s) 83, 117
FaeI CATG 3 cut(s) 327, 390, 418
FaiI YATR 6 cut(s) 92, 325, 388, 416, 422, 450
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 323, 386, 414
FbaI TGATCA 1 cut(s) 343
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 102
GlaI GCGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 359
HhaI GCGC 1 cut(s) 66
Hin1II CATG 3 cut(s) 327, 390, 418
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 2 cut(s) 232, 312
Hpy188I TCNGA 6 cut(s) 41, 97, 262, 276, 318, 348
Hpy188III TCNNGA 2 cut(s) 6, 27
Hpy8I GTNNAC 2 cut(s) 232, 312
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 161, 173, 271
HpyF3I CTNAG 3 cut(s) 38, 60, 131
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 3 cut(s) 327, 390, 418
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 23, 262, 343
LpnPI CCDG 7 cut(s) 19, 252, 279, 281, 366, 372, 387
LweI GCATC 1 cut(s) 280
MaeII ACGT 1 cut(s) 16
MalI GATC 3 cut(s) 25, 264, 345
MboI GATC 3 cut(s) 23, 262, 343
MboII GAAGA 4 cut(s) 42, 56, 149, 360
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 6 cut(s) 115, 247, 303, 330, 436, 460
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 299, 341
MnlI CCTC 7 cut(s) 139, 172, 193, 206, 246, 382, 447
MseI TTAA 3 cut(s) 302, 435, 469
MslI CAYNNNNRTG 1 cut(s) 419
MspI CCGG 1 cut(s) 359
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 175
NdeII GATC 3 cut(s) 23, 262, 343
NlaIII CATG 3 cut(s) 327, 390, 418
NlaIV GGNNCC 1 cut(s) 264
NspI RCATGY 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 197
PciI ACATGT 1 cut(s) 323
PctI GAATGC 1 cut(s) 175
PinAI ACCGGT 1 cut(s) 358
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 148
PscI ACATGT 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 2 cut(s) 148, 390
PspPPI RGGWCCY 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 197
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 302, 435, 469
Sau3AI GATC 3 cut(s) 23, 262, 343
Sau96I GGNCC 2 cut(s) 148, 390
SchI GAGTC 1 cut(s) 343
SduI GDGCHC 1 cut(s) 102
SetI ASST 8 cut(s) 19, 88, 102, 153, 167, 198, 340, 403
SfaNI GCATC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 2 cut(s) 148, 390
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 6 cut(s) 115, 247, 303, 330, 436, 460
SstI GAGCTC 1 cut(s) 102
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 26, 198
TasI AATT 6 cut(s) 115, 247, 303, 330, 436, 460
Tru1I TTAA 3 cut(s) 302, 435, 469
Tru9I TTAA 3 cut(s) 302, 435, 469
TspDTI ATGAA 3 cut(s) 375, 411, 434
TspGWI ACGGA 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 148, 390
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.