Rh6BG391500
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018803
Physical Location & Seq
Reverse (-)
61938587 .. 61940476
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG391500.1

Sequence Viewer

Length: 909 bp
ATGACAGAGAATCGTCACAAAAACTTCGTCAACTTAATGATCCAATATCTTGACCGTACCAATCTTGCAATAGTTGCACGAAGCTTGGAGCGCCACTCTGCCTTGTTCTTCAACTTGAAGTATTTCGAGGATTGCTTCATTGGTGGAAACCTTGACGAAGCTGATGATTACCTCAGCGGTTTCACCTCCGTCGATGACAATTCTTTCTCGGCTCTTCTCTTTTTTGAGATTAGATGGCACAAGTTCATACTAGCACTGGATTTAAAGCAACGTCAGAGAGCGAGAAGAATACTCAGAGAAGAACTCCAAACATTTCAGCGCTTCGACTGTCGTCTCAAAGCTAATATGTCCGAGCTCTTACGCTTGGATAATTTCAGAGATGGGCTAGGTGAAGAATACGAGGACCTTGGAGTTGCAAGGTTGAATGCAATGGAGGAAGTTAGGAACAACCTGGAGGCCAATCCATTGTTGAAAAACAAGATTGTGTACCCTCCTGCGGGGAATTTCGGGGTTTCGGATCATGTGCATCCGGCTACACCATTCCCGGGTCTGGCATTAATTCCGTCAACTCTGACAGCAGGTCCAAGTGAAGCTAATCAGACTCCAGCACCGGGCAAACATTCCACCACCTTATCCTCTTGTCTATTTTCGAACCTGCAGTTACCTGTCACTATTCAGCCTCGCCCCACTCCGCCGGCGGCGTCGCTGCAGCTATCAGGAATGAGACGTGAACGTCAGGAGAAGGAGGAGGAGGAGCGTAGAAAGCGCTCTCGACACTGTTTGGACCTCGTTCCTGTCAATCTGCATCCTGGGCTTGAGGCGAACGCTGAGGGGCTTGAGGCTCCTAAGCAGAACAACCCCAAAATGGATTCTCGTACTGCTCCATCTGCTACCCAGACTCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

302

Amino Acids

34.25

Weight (kDa)

6.52

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 38 - 161 3.7e-31 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28640
rosa_laevigata RLG00000011601
rosa_multiflora Rmu_sc0004989.1_g000009
rosa_roxburghii Rroxscaffold_7G00170530
rosa_rugosa Rorug06G0271800
rosa_samantha Rh6AG383100 Rh6BG391500 Rh6CG396500 Rh6DG383900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 732
Acc36I ACCTGC 2 cut(s) 569, 663
AciI CCGC 4 cut(s) 177, 497, 692, 698
AclWI GGATC 2 cut(s) 34, 525
AcsI RAATTY 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 701
AfaI GTAC 3 cut(s) 58, 488, 877
AfeI AGCGCT 2 cut(s) 320, 767
AfiI CCNNNNNNNGG 6 cut(s) 496, 497, 545, 550, 611, 865
AgsI TTSAA 4 cut(s) 112, 118, 424, 472
AhdI GACNNNNNGTC 1 cut(s) 579
AjiI CACGTC 1 cut(s) 728
AjnI CCWGG 2 cut(s) 450, 808
AluBI AGCT 6 cut(s) 84, 161, 341, 355, 593, 712
AluI AGCT 6 cut(s) 84, 161, 341, 355, 593, 712
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 338, 718
AlwI GGATC 2 cut(s) 34, 525
Ama87I CYCGRG 1 cut(s) 544
Aor51HI AGCGCT 2 cut(s) 320, 767
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 706, 709
ApoI RAATTY 1 cut(s) 502
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AseI ATTAAT 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 3 cut(s) 93, 321, 768
AspS9I GGNCC 3 cut(s) 403, 581, 784
AsuC2I CCSGG 3 cut(s) 545, 546, 612
AsuHPI GGTGA 2 cut(s) 175, 401
AsuII TTCGAA 1 cut(s) 650
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 3 cut(s) 403, 581, 784
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 2 cut(s) 173, 828
BbvI GCAGC 2 cut(s) 693, 721
BccI CCATC 3 cut(s) 228, 374, 892
BciT130I CCWGG 2 cut(s) 452, 810
BcnI CCSGG 3 cut(s) 545, 546, 612
BcoDI GTCTC 2 cut(s) 338, 718
BfaI CTAG 2 cut(s) 251, 386
BfmI CTRYAG 2 cut(s) 656, 707
BfoI RGCGCY 3 cut(s) 94, 322, 769
BfuAI ACCTGC 2 cut(s) 569, 663
BisI GCNGC 3 cut(s) 699, 707, 710
BlsI GCNGC 3 cut(s) 700, 708, 711
Bme1390I CCNGG 5 cut(s) 452, 545, 546, 612, 810
Bme18I GGWCC 3 cut(s) 403, 581, 784
BmeRI GACNNNNNGTC 1 cut(s) 579
BmeT110I CYCGRG 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 403, 581, 784
BmiI GGNNCC 1 cut(s) 843
BmrFI CCNGG 5 cut(s) 452, 545, 546, 612, 810
BmsI GCATC 2 cut(s) 535, 814
BoxI GACNNNNGTC 1 cut(s) 330
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 288, 320
BpmI CTGGAG 2 cut(s) 473, 588
Bpu10I CCTNAGC 3 cut(s) 173, 828, 846
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 2 cut(s) 836, 857
BpuMI CCSGG 3 cut(s) 545, 546, 612
BsaHI GRCGYC 1 cut(s) 701
BsaJI CCNNGG 3 cut(s) 406, 544, 809
BsaXI ACNNNNNCTCC 1 cut(s) 883
Bsc4I CCNNNNNNNGG 6 cut(s) 496, 497, 545, 550, 611, 865
Bse118I RCCGGY 1 cut(s) 694
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 2 cut(s) 452, 810
BseDI CCNNGG 3 cut(s) 406, 544, 809
BseGI GGATG 2 cut(s) 526, 805
BseLI CCNNNNNNNGG 6 cut(s) 496, 497, 545, 550, 611, 865
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 187, 307, 819
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 4 cut(s) 761, 764, 767, 891
BseXI GCAGC 2 cut(s) 693, 721
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 4 cut(s) 530, 545, 611, 695
BslI CCNNNNNNNGG 6 cut(s) 496, 497, 545, 550, 611, 865
BsmAI GTCTC 2 cut(s) 338, 718
BsmBI CGTCTC 2 cut(s) 338, 718
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 544
Bsp119I TTCGAA 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 2 cut(s) 39, 517
BspACI CCGC 4 cut(s) 177, 497, 692, 698
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 186, 306, 820
BspLI GGNNCC 1 cut(s) 843
BspMAI CTGCAG 2 cut(s) 660, 711
BspMI ACCTGC 2 cut(s) 569, 663
BspPI GGATC 2 cut(s) 34, 525
BspQI GCTCTTC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 694
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 406, 544, 809
BssMI GATC 2 cut(s) 39, 517
BssNI GRCGYC 1 cut(s) 701
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 2 cut(s) 452, 810
Bst4CI ACNGT 3 cut(s) 56, 329, 779
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 4 cut(s) 173, 293, 828, 846
BstF5I GGATG 2 cut(s) 526, 805
BstH2I RGCGCY 3 cut(s) 94, 322, 769
BstHHI GCGC 3 cut(s) 93, 321, 768
BstKTI GATC 2 cut(s) 42, 520
BstMAI GTCTC 2 cut(s) 338, 718
BstMBI GATC 2 cut(s) 39, 517
BstMWI GCNNNNNNNGC 5 cut(s) 74, 90, 763, 811, 887
BstNI CCWGG 2 cut(s) 452, 810
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 5 cut(s) 450, 543, 544, 610, 808
BstSFI CTRYAG 2 cut(s) 656, 707
BstV1I GCAGC 2 cut(s) 693, 721
BsuRI GGCC 1 cut(s) 458
BtrI CACGTC 1 cut(s) 728
BtsCI GGATG 2 cut(s) 526, 805
BtsIMutI CAGTG 2 cut(s) 254, 775
BveI ACCTGC 2 cut(s) 569, 663
Cac8I GCNNGC 1 cut(s) 696
CfoI GCGC 3 cut(s) 93, 321, 768
Cfr10I RCCGGY 1 cut(s) 694
Cfr13I GGNCC 3 cut(s) 403, 581, 784
Cfr9I CCCGGG 1 cut(s) 544
CseI GACGC 1 cut(s) 690
Csp6I GTAC 3 cut(s) 57, 487, 876
CviAII CATG 1 cut(s) 521
CviQI GTAC 3 cut(s) 57, 487, 876
DdeI CTNAG 4 cut(s) 173, 293, 828, 846
DpnI GATC 2 cut(s) 41, 519
DpnII GATC 2 cut(s) 39, 517
DraI TTTAAA 1 cut(s) 264
DrdI GACNNNNNNGTC 1 cut(s) 732
DriI GACNNNNNGTC 1 cut(s) 579
DseDI GACNNNNNNGTC 1 cut(s) 732
Eam1104I CTCTTC 1 cut(s) 219
Eam1105I GACNNNNNGTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 681
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 3 cut(s) 403, 581, 784
Eco47III AGCGCT 2 cut(s) 320, 767
Eco53kI GAGCTC 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 450, 808
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 2 cut(s) 338, 718
FaeI CATG 1 cut(s) 524
FaiI YATR 3 cut(s) 248, 347, 522
FatI CATG 1 cut(s) 520
FauI CCCGC 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 699, 707, 710
FokI GGATG 2 cut(s) 513, 792
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 699, 707, 710
FspBI CTAG 2 cut(s) 251, 386
GlaI GCGC 3 cut(s) 92, 320, 767
GluI GCNGC 3 cut(s) 699, 707, 710
GsuI CTGGAG 2 cut(s) 473, 588
HaeII RGCGCY 3 cut(s) 94, 322, 769
HaeIII GGCC 1 cut(s) 458
HapII CCGG 4 cut(s) 530, 545, 611, 695
HgaI GACGC 1 cut(s) 690
HhaI GCGC 3 cut(s) 93, 321, 768
Hin1I GRCGYC 1 cut(s) 701
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 3 cut(s) 91, 319, 766
HinP1I GCGC 3 cut(s) 91, 319, 766
HincII GTYRAC 2 cut(s) 31, 567
HindII GTYRAC 2 cut(s) 31, 567
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 4 cut(s) 10, 601, 869, 898
HpaII CCGG 4 cut(s) 530, 545, 611, 695
HphI GGTGA 2 cut(s) 175, 401
Hpy166II GTNNAC 4 cut(s) 31, 487, 567, 731
Hpy188I TCNGA 7 cut(s) 276, 296, 352, 377, 517, 573, 600
Hpy188III TCNNGA 4 cut(s) 50, 717, 737, 771
Hpy8I GTNNAC 4 cut(s) 31, 487, 567, 731
Hpy99I CGWCG 2 cut(s) 194, 706
HpyAV CCTTC 1 cut(s) 736
HpyCH4III ACNGT 3 cut(s) 56, 329, 779
HpyCH4IV ACGT 3 cut(s) 271, 727, 733
HpyCH4V TGCA 8 cut(s) 68, 77, 416, 428, 526, 658, 709, 805
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 90, 763, 811, 887
HpyF3I CTNAG 4 cut(s) 173, 293, 828, 846
HpySE526I ACGT 3 cut(s) 271, 727, 733
Hsp92I GRCGYC 1 cut(s) 701
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 3 cut(s) 91, 319, 766
KroI GCCGGC 1 cut(s) 694
KroNI GCCGGC 1 cut(s) 696
Kzo9I GATC 2 cut(s) 39, 517
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 4 cut(s) 88, 754, 847, 886
Lsp1109I GCAGC 2 cut(s) 693, 721
LweI GCATC 2 cut(s) 535, 814
MaeI CTAG 2 cut(s) 251, 386
MaeII ACGT 3 cut(s) 271, 727, 733
MaeIII GTNAC 3 cut(s) 14, 660, 667
MalI GATC 2 cut(s) 41, 519
MboI GATC 2 cut(s) 39, 517
MboII GAAGA 5 cut(s) 100, 206, 297, 311, 404
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 4 cut(s) 199, 370, 502, 558
MlyI GAGTC 2 cut(s) 595, 892
MreI CGCCGGCG 1 cut(s) 694
MroNI GCCGGC 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 3 cut(s) 35, 263, 557
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 4 cut(s) 530, 545, 611, 695
MspR9I CCNGG 5 cut(s) 452, 545, 546, 612, 810
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 452, 810
MwoI GCNNNNNNNGC 5 cut(s) 74, 90, 763, 811, 887
NaeI GCCGGC 1 cut(s) 696
NciI CCSGG 3 cut(s) 545, 546, 612
NdeII GATC 2 cut(s) 39, 517
NgoMIV GCCGGC 1 cut(s) 694
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 1 cut(s) 843
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 2 cut(s) 14, 667
NspV TTCGAA 1 cut(s) 650
PciSI GCTCTTC 1 cut(s) 219
PctI GAATGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 696
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 10, 869
PkrI GCNGC 3 cut(s) 700, 708, 711
PleI GAGTC 2 cut(s) 595, 892
PpsI GAGTC 2 cut(s) 595, 892
PpuMI RGGWCCY 1 cut(s) 403
PshAI GACNNNNGTC 1 cut(s) 330
PshBI ATTAAT 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 450, 808
PspGI CCWGG 2 cut(s) 450, 808
PspN4I GGNNCC 1 cut(s) 843
PspPI GGNCC 3 cut(s) 403, 581, 784
PspPPI RGGWCCY 1 cut(s) 403
PstI CTGCAG 2 cut(s) 660, 711
RsaI GTAC 3 cut(s) 58, 488, 877
RsaNI GTAC 3 cut(s) 57, 487, 876
SacI GAGCTC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 35, 263, 557
SatI GCNGC 3 cut(s) 699, 707, 710
Sau3AI GATC 2 cut(s) 39, 517
Sau96I GGNCC 3 cut(s) 403, 581, 784
SchI GAGTC 2 cut(s) 595, 892
ScrFI CCNGG 5 cut(s) 452, 545, 546, 612, 810
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 2 cut(s) 535, 814
SfcI CTRYAG 2 cut(s) 656, 707
SfuI TTCGAA 1 cut(s) 650
SgrAI CRCCGGYG 1 cut(s) 694
SinI GGWCC 3 cut(s) 403, 581, 784
SmaI CCCGGG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 815, 836
SmoI CTYRAG 2 cut(s) 815, 836
Sse9I AATT 4 cut(s) 199, 370, 502, 558
SsiI CCGC 4 cut(s) 177, 497, 692, 698
SspMI CTAG 2 cut(s) 251, 386
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 5 cut(s) 450, 543, 544, 610, 808
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 3 cut(s) 56, 329, 779
TaiI ACGT 3 cut(s) 274, 730, 736
TaqI TCGA 5 cut(s) 126, 192, 324, 650, 772
TasI AATT 4 cut(s) 199, 370, 502, 558
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 2 cut(s) 10, 869
Tru1I TTAA 3 cut(s) 35, 263, 557
Tru9I TTAA 3 cut(s) 35, 263, 557
TscAI CASTG 2 cut(s) 261, 782
TseFI GTSAC 2 cut(s) 14, 667
TseI GCWGC 2 cut(s) 706, 709
Tsp45I GTSAC 2 cut(s) 14, 667
TspDTI ATGAA 2 cut(s) 127, 235
TspGWI ACGGA 2 cut(s) 178, 552
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 2 cut(s) 261, 782
VpaK11BI GGWCC 3 cut(s) 403, 581, 784
VspI ATTAAT 1 cut(s) 557
XapI RAATTY 1 cut(s) 502
XmaI CCCGGG 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 2 cut(s) 251, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.