FvH4_2g28930

PhoX homologous domain, present in p47phox and p40phox.

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
22549809 .. 22556515
6707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28930.t2

Sequence Viewer

Length: 2043 bp
ATGCAGCAGAGACGGAGTCCTCCGAAGCACAGACACGATGGGACTTCGCCGCTGCCGCTTGGGATGGATTGGAGTCCTCCGCCGCGGAAATGGAACGGGCGGGAGACAGTTTGGCCGCACGATCCTCACACAGGATGGAGTTATTGTGTCATCATTCCGTCCTGGGTTGTTCTTCCCAAATCAAGAAACTCAGACCCCGTCGTGTTCTACAGGATTCAGGTGGGACTGCAATCACCTGAAGGTATTACAACTACAAGTGGAGTGCTAAGAAGATTTAATGATTTTCTGAAGTTATTTAACGATCTTAAAAAGGCATTTCCCAAGAAGAATCTCCCAACAACTCCACCCAAGGGACTCCTGCGGATGAAGAGTCAGGAACTGTTGGAAGAGAGAAGGTGCTCTTTGGAGGCCTGGATGACAAAACTGCTATCTGATATAGATATATCAAGAAGCGTTGCAGTGGCATCCTTTCTTGAATTAGAATCTGCTGCTAGGTCCTCATTCCAAGACACAAGCCAACACACTTCAGAAGTGAATTCACTATCGCCTTCCCATCCGACCTTACCTGCCGTCTTTGGTAGCTCGTCCATTACATCAGATTATGGAAGTGATACTGCTTATGAGACATCTGACCTGGGAACACCAAGACTAGGAATGGATGATAGTTCAGAATTGGGTATCGAGGATCTGGCATTAGATGAAGATCTAACAAGCCCAATAGAAAAGCTTGTGAAGTTTGGCATGACCAATATTGATGAGGGACTGTTTCTGGGGCAGACTATACTAGAGCAATTGGAAGGCCTTCCTAAACATAAAATGCATGGGAGACATGTCAATAATGTTACAGGGAAGGACCTGCATAATGGAAATGCTTCTAAATCTTCAATACTAGCTCGTAATGGAATGGAACTTTTCTCCCAGTCAGAGCATAGTAAAGTATTTAGTCACGCTCGCAAGCTTTCAGATGAAAGTGTGGGAAGTGATGTAAGTTCTCTAAAAGGTAGTGAAATGTCTCACTCTGGGGTTCCAAATTCAATTGGTAATGGCACCCTTGACCTTCTTGGAGGTTCTGATGTTTCAAGGATCATGGAAATGCTTGGCAGTACAGAATTGCAAACCTCTGGCAGCACTCAAGTAGTTCTTCCATTGGATCAGCGTCCTAAACTGAACAGGTTTATGTTGACCATGCAGCAAAGACTAGTCACAGCTAAAACAGACATGGAAGATCTTATAGCTAGATTAAATCAAGAAATAGCGGTCAAAGATTACCTCGCAACAAAGGTCAAGGATTTGGAAGTGGAACTTGAAACTACTAGACAAAAGAGTAAGGAAAACCTTCAGCAAGCTATTTTGGTTGAAAGGGAAAGGTTTACCAAAATGCAGTGGGATATGGAGGAACTTCGTCGGAAGTCATTGGAAATGGAGTTGAAGTTGAAGTCTGAACAGGATAAGACATCATGTCCAGAGGCAACACTAGATTCCACTATTCAGGAGAAGGACATATCTCAATCAGAGTTAGATTCTTCTAAGGAGCAGCTTGAGAAATTGTCAAAGCGATATGAAGAGCTAGAAGCAAAATCAAAAGCAGATATTAAAGTTCTTATTAAAGAAGTCAAATCCTTGCGTAGTTCCCAAGCAGAACTCAAGCACGAGCTTAGTAAATCTCTGAAGGATAAATCTGAATCTGAGAAACTTCTCCAACAGGAACAACAGAGGAGCAAACAGGTAGAAACTGCTAGGGAGAAATTGTTACATGAATGCAAGATGCTTCACAAACAGCTTCAGGAGTGCAATACCAATTTTCCTTCTGAAGGTGAAGGTGACTTCAATTTGGGTTCATCCTCGATACAAGAGGCTTCCGATTTGTTGACAACATCAGACAACCGAATAAACCACCTACTTTCAGAGGCACAACTCTTGGAACAAGACAACAGAGATGTTTCTGAAGTTGGTGTTACAGATGATATAAGGACCATAGATGATGAGTTGAGGAAGATGCTCGTAGACATTTTTACTGAGAACGCGAGCTTGCGGAAACAGTAA

Protein Analysis

681

Amino Acids

76.57

Weight (kDa)

5.57

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PX PF00787 84 - 159 8.6e-14 PX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 574, 864
AccB1I GGYRCC 1 cut(s) 1046
AccI GTMKAC 1 cut(s) 2004
AccII CGCG 2 cut(s) 85, 2024
AclWI GGATC 4 cut(s) 116, 693, 1091, 1158
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 535, 1030
AcuI CTGAAG 8 cut(s) 258, 308, 510, 1322, 1688, 1766, 1830, 1965
AfaI GTAC 1 cut(s) 1105
AfiI CCNNNNNNNGG 4 cut(s) 131, 350, 650, 1811
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 9 cut(s) 476, 885, 1035, 1080, 1307, 1358, 1429, 1435, 1828
AhdI GACNNNNNGTC 1 cut(s) 1458
AhlI ACTAGT 1 cut(s) 1198
AjnI CCWGG 3 cut(s) 161, 410, 633
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 5 cut(s) 4, 98, 617, 820, 1017
AlwI GGATC 4 cut(s) 116, 693, 1091, 1158
AlwNI CAGNNNCTG 1 cut(s) 379
AoxI GGCC 3 cut(s) 113, 408, 799
ApeKI GCWGC 6 cut(s) 4, 52, 488, 1125, 1189, 1534
ApoI RAATTY 2 cut(s) 535, 1030
Asp700I GAANNNNTTC 3 cut(s) 801, 871, 1335
AspS9I GGNCC 3 cut(s) 495, 853, 1971
AsuHPI GGTGA 3 cut(s) 225, 1826, 1832
AvaII GGWCC 3 cut(s) 495, 853, 1971
BanI GGYRCC 1 cut(s) 1046
BauI CACGAG 1 cut(s) 1649
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 6 cut(s) 16, 39, 475, 1137, 1201, 1546
BccI CCATC 4 cut(s) 32, 58, 129, 561
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 3 cut(s) 163, 412, 635
BcoDI GTCTC 5 cut(s) 4, 98, 617, 820, 1017
BcuI ACTAGT 1 cut(s) 1198
BfmI CTRYAG 1 cut(s) 208
BfuAI ACCTGC 2 cut(s) 574, 864
BglII AGATCT 2 cut(s) 703, 1225
Bme1390I CCNGG 3 cut(s) 163, 412, 635
Bme18I GGWCC 3 cut(s) 495, 853, 1971
BmeRI GACNNNNNGTC 1 cut(s) 1458
BmgT120I GGNCC 3 cut(s) 495, 853, 1971
BmiI GGNNCC 2 cut(s) 1026, 1048
BmrFI CCNGG 3 cut(s) 163, 412, 635
BmrI ACTGGG 1 cut(s) 913
BmsI GCATC 3 cut(s) 473, 1755, 1986
BmuI ACTGGG 1 cut(s) 913
BpuEI CTTGAG 3 cut(s) 1116, 1559, 1628
BsaBI GATNNNNATC 1 cut(s) 702
BsaJI CCNNGG 4 cut(s) 83, 162, 348, 634
BsaXI ACNNNNNCTCC 6 cut(s) 130, 160, 1415, 1445, 1733, 1763
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 350, 650, 1811
Bse1I ACTGG 1 cut(s) 919
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 3 cut(s) 163, 412, 635
BseDI CCNNGG 4 cut(s) 83, 162, 348, 634
BseGI GGATG 8 cut(s) 69, 140, 369, 420, 464, 553, 664, 1838
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 4 cut(s) 131, 350, 650, 1811
BseMII CTCAG 3 cut(s) 204, 1677, 2007
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 1 cut(s) 1729
BseXI GCAGC 6 cut(s) 16, 39, 475, 1137, 1201, 1546
Bsh1236I CGCG 2 cut(s) 85, 2024
BshFI GGCC 3 cut(s) 115, 410, 801
BshNI GGYRCC 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 401
BslFI GGGAC 4 cut(s) 55, 237, 366, 774
BslI CCNNNNNNNGG 4 cut(s) 131, 350, 650, 1811
BsmAI GTCTC 5 cut(s) 4, 98, 617, 820, 1017
BsmBI CGTCTC 1 cut(s) 4
BsmFI GGGAC 4 cut(s) 55, 237, 366, 774
BsmI GAATGC 1 cut(s) 1763
BsnI GGCC 3 cut(s) 115, 410, 801
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
BspANI GGCC 3 cut(s) 115, 410, 801
BspCNI CTCAG 3 cut(s) 203, 1678, 2008
BspFNI CGCG 2 cut(s) 85, 2024
BspLI GGNNCC 2 cut(s) 1026, 1048
BspMI ACCTGC 2 cut(s) 574, 864
BspPI GGATC 4 cut(s) 116, 693, 1091, 1158
BspQI GCTCTTC 1 cut(s) 1557
BspT107I GGYRCC 1 cut(s) 1046
BsrI ACTGG 1 cut(s) 919
BssECI CCNNGG 4 cut(s) 83, 162, 348, 634
BssMI GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
BssSI CACGAG 1 cut(s) 1649
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 1649
Bst2UI CCWGG 3 cut(s) 163, 412, 635
Bst4CI ACNGT 4 cut(s) 109, 381, 765, 2040
Bst6I CTCTTC 3 cut(s) 362, 381, 1557
BstC8I GCNNGC 5 cut(s) 952, 956, 1344, 2026, 2030
BstDEI CTNAG 6 cut(s) 190, 266, 1527, 1655, 1686, 2016
BstDSI CCRYGG 1 cut(s) 83
BstENI CCTNNNNNAGG 2 cut(s) 129, 1809
BstF5I GGATG 8 cut(s) 69, 140, 369, 420, 464, 553, 664, 1838
BstFNI CGCG 2 cut(s) 85, 2024
BstKTI GATC 7 cut(s) 124, 304, 688, 706, 1086, 1153, 1228
BstMAI GTCTC 5 cut(s) 4, 98, 617, 820, 1017
BstMBI GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNI CCWGG 3 cut(s) 163, 412, 635
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 3 cut(s) 161, 410, 633
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 2 cut(s) 85, 2024
BstV1I GCAGC 6 cut(s) 16, 39, 475, 1137, 1201, 1546
BstX2I RGATCY 3 cut(s) 685, 703, 1225
BstYI RGATCY 3 cut(s) 685, 703, 1225
BsuRI GGCC 3 cut(s) 115, 410, 801
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 8 cut(s) 69, 140, 369, 420, 464, 553, 664, 1838
BtsI GCAGTG 2 cut(s) 465, 1388
BtsIMutI CAGTG 2 cut(s) 465, 1388
BveI ACCTGC 2 cut(s) 574, 864
Cac8I GCNNGC 5 cut(s) 952, 956, 1344, 2026, 2030
CaiI CAGNNNCTG 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 495, 853, 1971
Cfr42I CCGCGG 1 cut(s) 86
CseI GACGC 1 cut(s) 1145
Csp6I GTAC 1 cut(s) 1104
CviAII CATG 8 cut(s) 742, 821, 830, 1087, 1186, 1219, 1458, 1754
CviQI GTAC 1 cut(s) 1104
DdeI CTNAG 6 cut(s) 190, 266, 1527, 1655, 1686, 2016
DpnI GATC 7 cut(s) 123, 303, 687, 705, 1085, 1152, 1227
DpnII GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
DriI GACNNNNNGTC 1 cut(s) 1458
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 3 cut(s) 362, 381, 1557
Eam1105I GACNNNNNGTC 1 cut(s) 1458
EarI CTCTTC 3 cut(s) 362, 381, 1557
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 2 cut(s) 410, 801
Eco47I GGWCC 3 cut(s) 495, 853, 1971
Eco57I CTGAAG 8 cut(s) 258, 308, 510, 1322, 1688, 1766, 1830, 1965
EcoNI CCTNNNNNAGG 2 cut(s) 129, 1809
EcoO109I RGGNCCY 2 cut(s) 495, 853
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 161, 410, 633
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 4
FaeI CATG 8 cut(s) 745, 824, 833, 1090, 1189, 1222, 1461, 1757
FalI AAGNNNNNCTT 6 cut(s) 385, 417, 1125, 1157, 1287, 1319
FaqI GGGAC 4 cut(s) 55, 237, 366, 774
FatI CATG 8 cut(s) 741, 820, 829, 1086, 1185, 1218, 1457, 1753
FauI CCCGC 1 cut(s) 93
FblI GTMKAC 1 cut(s) 2004
FokI GGATG 8 cut(s) 76, 147, 376, 427, 451, 540, 671, 1825
HaeIII GGCC 3 cut(s) 115, 410, 801
HgaI GACGC 1 cut(s) 1145
Hin1II CATG 8 cut(s) 745, 824, 833, 1090, 1189, 1222, 1461, 1757
HincII GTYRAC 2 cut(s) 1182, 1869
HindII GTYRAC 2 cut(s) 1182, 1869
HindIII AAGCTT 2 cut(s) 725, 956
HphI GGTGA 3 cut(s) 225, 1826, 1832
Hpy166II GTNNAC 4 cut(s) 1182, 1371, 1869, 2005
Hpy188III TCNNGA 8 cut(s) 183, 374, 447, 473, 1247, 1463, 1490, 1784
Hpy8I GTNNAC 4 cut(s) 1182, 1371, 1869, 2005
Hpy99I CGWCG 2 cut(s) 203, 1407
HpyCH4III ACNGT 4 cut(s) 109, 381, 765, 2040
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 6 cut(s) 190, 266, 1527, 1655, 1686, 2016
Hsp92II CATG 8 cut(s) 745, 824, 833, 1090, 1189, 1222, 1461, 1757
KspI CCGCGG 1 cut(s) 86
Kzo9I GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
LguI GCTCTTC 1 cut(s) 1557
LmnI GCTCC 2 cut(s) 1531, 1716
Lsp1109I GCAGC 6 cut(s) 16, 39, 475, 1137, 1201, 1546
LweI GCATC 3 cut(s) 473, 1755, 1986
MaeIII GTNAC 6 cut(s) 841, 944, 1201, 1749, 1820, 1954
MalI GATC 7 cut(s) 123, 303, 687, 705, 1085, 1152, 1227
MboI GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
MfeI CAATTG 2 cut(s) 791, 1035
MflI RGATCY 3 cut(s) 685, 703, 1225
MhlI GDGCHC 1 cut(s) 401
MlyI GAGTC 4 cut(s) 25, 82, 348, 379
MmeI TCCRAC 4 cut(s) 363, 581, 1385, 1723
Mph1103I ATGCAT 1 cut(s) 822
MroXI GAANNNNTTC 3 cut(s) 801, 871, 1335
MseI TTAA 6 cut(s) 276, 297, 306, 1241, 1593, 1605
MslI CAYNNNNRTG 1 cut(s) 1091
MspA1I CMGCKG 2 cut(s) 52, 85
MspR9I CCNGG 3 cut(s) 163, 412, 635
MunI CAATTG 2 cut(s) 791, 1035
Mva1269I GAATGC 1 cut(s) 1763
MvaI CCWGG 3 cut(s) 163, 412, 635
MvnI CGCG 2 cut(s) 85, 2024
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
NlaIII CATG 8 cut(s) 745, 824, 833, 1090, 1189, 1222, 1461, 1757
NlaIV GGNNCC 2 cut(s) 1026, 1048
NmuCI GTSAC 3 cut(s) 944, 1201, 1820
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 1 cut(s) 833
PceI AGGCCT 2 cut(s) 410, 801
PciI ACATGT 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 1557
PctI GAATGC 1 cut(s) 1763
PdmI GAANNNNTTC 3 cut(s) 801, 871, 1335
PfeI GAWTC 6 cut(s) 214, 328, 482, 1478, 1520, 1682
PflFI GACNNNGTC 2 cut(s) 15, 197
PleI GAGTC 4 cut(s) 24, 81, 348, 378
PpsI GAGTC 4 cut(s) 24, 81, 348, 378
PpuMI RGGWCCY 2 cut(s) 495, 853
PscI ACATGT 1 cut(s) 829
Psp5II RGGWCCY 2 cut(s) 495, 853
Psp6I CCWGG 3 cut(s) 161, 410, 633
PspGI CCWGG 3 cut(s) 161, 410, 633
PspN4I GGNNCC 2 cut(s) 1026, 1048
PspPI GGNCC 3 cut(s) 495, 853, 1971
PspPPI RGGWCCY 2 cut(s) 495, 853
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 3 cut(s) 685, 703, 1225
PsyI GACNNNGTC 2 cut(s) 15, 197
RsaI GTAC 1 cut(s) 1105
RsaNI GTAC 1 cut(s) 1104
RseI CAYNNNNRTG 1 cut(s) 1091
SacII CCGCGG 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 1557
SaqAI TTAA 6 cut(s) 276, 297, 306, 1241, 1593, 1605
Sau3AI GATC 7 cut(s) 121, 301, 685, 703, 1083, 1150, 1225
Sau96I GGNCC 3 cut(s) 495, 853, 1971
SchI GAGTC 4 cut(s) 25, 82, 348, 379
ScrFI CCNGG 3 cut(s) 163, 412, 635
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 3 cut(s) 473, 1755, 1986
SfcI CTRYAG 1 cut(s) 208
Sfr303I CCGCGG 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 86
SinI GGWCC 3 cut(s) 495, 853, 1971
SmiMI CAYNNNNRTG 1 cut(s) 1091
SmlI CTYRAG 3 cut(s) 1131, 1538, 1643
SmoI CTYRAG 3 cut(s) 1131, 1538, 1643
SpeI ACTAGT 1 cut(s) 1198
SseBI AGGCCT 2 cut(s) 410, 801
SspI AATATT 1 cut(s) 751
StuI AGGCCT 2 cut(s) 410, 801
StyD4I CCNGG 3 cut(s) 161, 410, 633
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 4 cut(s) 109, 381, 765, 2040
TaqI TCGA 2 cut(s) 681, 1844
TatI WGTACW 1 cut(s) 1103
TauI GCSGC 4 cut(s) 52, 58, 85, 118
TfiI GAWTC 6 cut(s) 214, 328, 482, 1478, 1520, 1682
Tru1I TTAA 6 cut(s) 276, 297, 306, 1241, 1593, 1605
Tru9I TTAA 6 cut(s) 276, 297, 306, 1241, 1593, 1605
TscAI CASTG 2 cut(s) 465, 1388
TseFI GTSAC 3 cut(s) 944, 1201, 1820
TseI GCWGC 6 cut(s) 4, 52, 488, 1125, 1189, 1534
Tsp45I GTSAC 3 cut(s) 944, 1201, 1820
TspDTI ATGAA 6 cut(s) 380, 714, 981, 1575, 1770, 1827
TspGWI ACGGA 2 cut(s) 28, 147
TspRI CASTG 2 cut(s) 465, 1388
Tth111I GACNNNGTC 2 cut(s) 15, 197
VpaK11BI GGWCC 3 cut(s) 495, 853, 1971
XagI CCTNNNNNAGG 2 cut(s) 129, 1809
XapI RAATTY 2 cut(s) 535, 1030
XceI RCATGY 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 2004
XmnI GAANNNNTTC 3 cut(s) 801, 871, 1335
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.